New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	1978503 =	NA (NA)	3 (0.080)	3/490	4.1	8.8%	noncoding (768/768 nt)	IS1	repeat region
	?	NC_000913	4555143 =	31 (0.820)					coding (568/774 nt)	uxuR	DNA‑binding transcriptional repressor UxuR
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

CATCGCCGAGTTTGCCGCTTTGCAGGCTACCCGCGAAGATATCGTCAAAATGCGTCAGGCATTGCAACTGGAAGAGCGTGAACTGGCTTCCAGTGCGCCGGGCAGCAGCGAAAGCGGTGACATGCAGTTCCATCTCGCTATTGCCGAAGCAACGCATAACAGCATGCTGGTGGAGCTGTTCCGTCAGTCCTGGCAGTGGCGGG‑AAAACAATCCAATGTGGATCCAGTTGCACAGCCATCTGGATGACAGCCTGTATCGCAAAGAG‑TGGTTGGGCGATCACAAACAGATCCTCGCCGCGTTAATCAAAAAAGA‑TGCCCGAGCGGCG‑AAGCTGGCAATGTGGC‑AGCATCTGG‑AAAACGTTAAGCAACGTCTGCTGGAATTCTCGAACGTTGACGATATTTATTTTGATGGCTATCTGTTTGATTCATGGCCGCTGGATAAAGTCGACGCCTGACTTATTATAATAAGCGCAAGGGTAAACGTTCCTTGC  >  NC_000913/4554899‑4555385                                                                                                                                                                                                                                                      |                                                                                                                                                                                                                                                        cATCGCCGAGTTTGCCGCTTTGCAGGCTACCCGCGAAGATATCGTCAAAATGCGTCAGGCATTGCAACTGGAAGAGCGTGAACTGGCTTCCAGTGCGCCGGGCAGCAGCGAAAGCGGTGACATGCAGTTCCATCTCGCTATTGCCGAAGCAACGCATAACAGCATGCTGGTGGAGCTGTTCCGTCAGTCCTGGCAGTGGCGGG‑AAAACAATCCAATGTGGATCCAGTTGCACAGCCATCTGGATGACAGcc                                                                                                                                                                                                                                                   <  1:111758/251‑1 (MQ=255) cATCGCCGAGTTGGCCGCTTTGCAGGCTACCCGCGAAGATATCGTCAAAATGCGTCAGGCATTGCAACTGGAAGAGCGTGAACTGGCTTCCAGTGCGCCGGGCAGCAGCGAAAGCGGTGACATGCAGTTCCATCTCGCTATTGCCGAAGCAACGCATAACAGCATGCTGGTGGAGCTGTTCCGTCAGTCCTGGCAGTGGCGGG‑AAAACAATCCAATGTGGATCCAGTTGCACAGCCATCTGGATGACAGcc                                                                                                                                                                                                                                                   <  2:349790/251‑1 (MQ=255)    cGCCGAGTTTGCCGCTTTGCAGGCTACCCGCGAAGATATCGTCAAAATGCGTCAGGCATTGCAACTGGAAGAGCGTGAACTGGCTTCCAGTGCGCCGGGCAGCAGCGAAAGCGGTGACATGCAGTTCCATCTCGCTATTGCCGAAGCAACGCATAACAGCATGCTGGTGGAGCTGTTCCGTCAGTCCTGGCAGTGGCGGG‑AAAACAATCCAATGTGGATCCAGTTGCACAGCCATCTGGATGACAGCCTg                                                                                                                                                                                                                                                 <  1:337627/250‑1 (MQ=255)                                cgcgAAGAGTTCGTCAAGATGCGGCAGGCAGTGCGACTGGAAGAGCGTGAACTGGCGTCCAGTGCGCCGGGCAGCAGCGAAAGCGGTGACATGCAGTTCCATCTCGCTATTGCCGAAGCAACGCATAACAGCATGCTGGTGGAGCTGTTCCGTCAGTCCTGGCAGTGGCGGG‑AAAACAATCCAACGTGGATCCAGTTGCACAGCCATCTGGATTACACCCTTTATCGCAAAGAT‑TGGTTGGGCGATCACaa                                                                                                                                                                                                                   <  2:350691/251‑1 (MQ=255)                                      gATATCGTCAAAATGCGTCAGGCATTGCAACTGGAAGAGCGAGACCTGGATTCAAGTGCGCCGGGCAGCAGCGAAAGAGGTGACATGCAGTTCCATCTCGCTATTGCCGAAGCAACGCATAACAGCATGCTGGTGGAGCTGTTCCGTCAGTCCTGGCAGTGGCGGG‑AAAAAAAACAAATGCGGCTCCCATTCCCCAGCCATCTGGATGACACCCTGCATCGCACagaacgggctggcggcaaccaacaga                                                                                                                                                                                                               >  1:186944/1‑227 (MQ=255)                                           cGTCAAAATGCGTCAGGCATTGCAACTGGAAGAGCGTGAACTGGCTTCCAGTGCGCCGGGCAGCAGCGAAAGCGGTGACATGCAGTTCCATCTCGCTATTGCCGAAGCAACGCATAACAGCATGCTGGTGGAGCTGTTCCGTCAGTCCTGGCAGTGGCGGG‑AAAACAATCCAATGTGGATCCAGTTGCACAGCCATCTGGATGACAGCCTGTATCGCAAAGAG‑TGGTTGGGCGATCACAAACAGATCCTc                                                                                                                                                                                                         <  2:275650/250‑1 (MQ=255)                                             tCAAAATGCGTCAGGCATTGCAACTGGAAGAGCGTGAACTGGCTTCCAGTGCGCCGGGCAGCAGCGAAAGCGGTGACATGCAGTTCCATCTCGCTATTGCCGAAGCAACGCATAACAGCATGCTGGTGGAGCTGTTCCGTCAGTCCTGGCAGTGGCGGG‑AAAACAATCCAATGTGGATCCAGTTGCACAGCCATCTGGATGACAGCCTGTATCGCAAAGAG‑TGGTTGGGCGATCACAAACAGATCCTcgc                                                                                                                                                                                                       <  1:169923/250‑1 (MQ=255)                                              cAAAATGCGTCAGGCATTGCAACTGGAAGAGCGTGAACTGGCTTCCAGTGCGCCGGGCAGCAGCGAAAGCGGTGACATGCAGTTCCATCTCGCTATTGCCGAAGCAACGCATAACAGCATGCTGGTGGAGCTGTTCCGTCAGTCCTGGCAGTGGCGGG‑AAAACAATCCAATGTGGATCCAGTTGCACAGCCATCTGGATGACAGCCTGTATCGCAAAGAG‑TGGTTGGGCGATCACAAACAGATCCTcgcc                                                                                                                                                                                                      <  1:288292/250‑1 (MQ=255)                                                            cATTGCAACTGGAAGAGCGTGAACTGGCTTCCAGTGCGCCGGGCAGCAGCGAAAGCGGTGACATGCAGTTCCATCTCGCTATTGCCGAAGCAACGCATAACAGCATGCTGGTGGAGCTGTTCCGTCAGTCCTGGCAGTGGCGGG‑AAAACAATCCAATGTGGATCCAGTTGCACAGCCATCTGGATGACAGCCTGTATCGCAAAGAG‑TGGTTGGGCGATCACAAACAGATCCTCGCCGCGTTAATCaaaaaa                                                                                                                                                                                       <  2:25956/251‑1 (MQ=255)                                                             aTTGCAACTGGAAGAGCGTGAACTGGCTTCCAGTGCGCCGGGCAGCAGCGAAAGCGGTGACATGCAGTTCCATCTCGCTATTGCCGAAGCAACGCATAACAGCATGCTGGTGGAGCTGTTCCGTCAGTCCTGGCAGTGGCGGG‑AAAACAATCCCATGTGGATCCAGGTGCACAGCCATCTGGGTGACAGCCTGTATCGCAAAGAG‑GGGGTGGGCGATCACAAAAAGAACCTCCCCGCGGTTATCaaaaaa                                                                                                                                                                                       >  1:199800/1‑250 (MQ=255)                                                                                     ggCTTCCAGTGCGCCGGGCAGCAGCGAAAGCGGTGACATGCAGTTCCATCTCGCTATTGCCGAAGCAACGCATAACAGCATGCTGGTGGAGCTGTTCCGTCAGTCCTGGCAGTGGCGGG‑AAAACAATCCAATGTGGATCCAGTTGCACAGCCATCTGGATGACAGCCTGTATCGCAAAGAG‑TGGTTGGGCGATCACAAACAGATCCTCGCCGCGTTAATCAAAAAAGA‑TGCCCGAGCGGCG‑AAGCTGGCa                                                                                                                                                             <  2:128789/250‑1 (MQ=255)                                                                                      gCTTCCAGTGCGCCGGGCAGCAGCGAAAGCGGTGACATGCAGTTCCATCTCGCTATTGCCGAAGCAACGCATAACAGCATGCTGGTGGAGCTGTTCCGTCAGTCCTGGCAGTGGCGGGGAAAAAAACCCATTTGGGATCC‑GTTGCACACACACCCGGGTGGCAGCCTTTATAGCAAAGAGAGGGGTGGGGAATC‑CACACAGAACCCCTCCGCGTTAATCaaaaaaaaagtcagcgccgcgaatctggcga                                                                                                                                                              >  2:290686/1‑225 (MQ=255)                                                                                         tCCAGTGCGCCGGGCAGCAGCGAAAGCGGTGACATGCAGTTCCATCTCGCTATTGCCGAAGCAACGCATAACAGCATGCTGGTGGAGCTGTTCCGTCAGTCCTGGCAGTGGCGGG‑AAAACAATCCAATGTGGATCCAGTTGCACAGCCATCTGGATGACAGCCTGTATCGCAAAGAG‑TGGTTGGGCGATCACAAACAGATCCTCGCCGCGTTAATCAAAAAAGA‑TGCCCGAGCGGCG‑AAGCTGGCAAtgt                                                                                                                                                         <  1:354287/250‑1 (MQ=255)                                                                                           cAGTGCGCCGGGCAGCAGCGAAAGCGGTGACATGCAGTTCCATCTCGCTATTGCCGAAGCAACGCATAACAGCATGCTGGTGGAGCTGTTCCGTCAGTCCTGGCAGTGGCGGG‑AAAACAATCCAATGTGGATCCAGTTGCACAGCCATCTGGATGACAGCCTGTATCGCAAAGAG‑TGGTTGGGCGATCACAAACAGATCCTCGCCGCGTTAATCAAAAAAGA‑TGCCCGAGCGGCG‑AAGCTGGCAATGTGgc                                                                                                                                                      <  2:364843/251‑1 (MQ=255)                                                                                                cgcCGGGCAGCAGCGAAAGCGGTGACATGCAGTTCCATCTCGCTATTGCCGAAGCAACGCATAACAGCATGCTGGTGGAGCTGTTCCGTCAGTCCTGGCAGTGGCGGG‑AAAACAATCCAATGTGGATCCAGTTGCACAGCCATCTGGATGACAGCCTGTATCGCAAAGAG‑TGGTTGGGCGATCACAAACAGATCCTCGCCGCGTTAATCAAAAAAGA‑TGCCCGAGCGGCG‑AAGCTGGCAATGTGGC‑AGCAt                                                                                                                                                <  1:239515/251‑1 (MQ=255)                                                                                                   cGGGCAGCAGCGAAAGCGGTGACATGCAGTTCCATCTCGCTATTGCCGAAGCAACGCATAACAGCATGCTGGTGGAGCTGTTCCGTCAGTCCTGGCAGTGGCGGG‑AAAACAATCCAATGTGGATCCAGTTGCACAGCCAGCTGGATGACAGCCTGTATCGCAAAGAG‑TGGTTGGGCGATCACAAACAGATCCTCGCCGCGTTAATCAAAAAAGA‑TGCCCGAgc                                                                                                                                                                           <  2:147674/223‑1 (MQ=255)                                                                                                              gAAAGCGGGGACATGCAGTTCCATCTCGCTATTGCCGAAGCAACGCATAACAGCATGCTGGTGGAGCTGTTCCGTCAGTCCTGGCAGTGGCGGG‑AAAACAATCCAATGTGGATCCAGTTGCACAGCCATCTGGATTACAGCCTGTATCGCAAAGAG‑TGGTTGGGCGATCACAAACAGATCCTCGCCGCGTTAATCAAAAAAGA‑TGCCCGAGCGGCG‑AAGCTGGCAATGTGGC‑AGCGTCTGG‑AAAACGTTaa                                                                                                                                 <  2:42498/251‑1 (MQ=255)                                                                                                               aaaGCGGTGACATGCAGTTCCATCTCGCTATTGCCGAAGCAACGCATAACAGCATGCTGGTGGAGCTGTTCCGTCAGTCCTGGCAGTGGCGGG‑AAAACAATCCAATGTGGATCCAGTTGCACAGCCATCTGGATGACAGCCTGTATCGCAAAGAG‑TGGTTGGGCGATCACAAACAGATCCTCGCCGCGTTAATCAAAAAAGA‑TGCCCGAGCGGCG‑AAGCTGGCAATGTGGC‑AGCATCTGG‑AAAACGTTAAg                                                                                                                                <  1:113158/251‑1 (MQ=255)                                                                                                                          aTGCAGTTCCATCTCGCTATTGCCGAAGCAACGCATAACAGCATGCTGGTGGAGCTGTTCCGTCAGTCCTGGCAGTGGCGGG‑AAAACAATCCAATGTGGATCCAGTTGCACAGCCATCTGGATGACAGCCTGTATCGCAAAGAG‑TGGTTGGGCGATCACAAACAGATCCTCGCCGCGTTAATCAAAAAAGA‑TGCCCGAGCGGCG‑AAGCTGGCAATGTGGC‑AGCATCTGG‑AAAACGTTAAGCAACGTctgct                                                                                                                     <  2:344881/251‑1 (MQ=255)                                                                                                                            gCAGTTCCATCTCGCTATTGCCGAAGCAACGCATAACAGCATGCTGGTGGAGCTGTTCCGTCAGTCCTGGCAGTGGCGGG‑AAAACAATCCAATGTGGATCCAGTTGCACAGCCATCTGGATGACAGCCTGTATCGCAAAGAG‑TGGTTGGGCGATCACAAACAGATCCTCGCCGCGTTAATCAAAAAAGA‑TGCCCGAGCGGCG‑AAGCTGGCAATGTGGC‑AGCATCTGG‑AAAACGTTAAGCAACGTctgctg                                                                                                                    <  1:89350/250‑1 (MQ=255)                                                                                                                            gCAGTTCCATCTCGCTATTGCCGAAGCAACGCATAACAGCATGCTGGTGGAGCTGTTCCGTCAGTCCTGGCAGTGGCGGG‑AAAACAATCCAATGTGGATCCAGTTGCACAGCCATCTGGATGACAGCCTGTATCGCAAAGAG‑TGGTTGGGCGATCACAAACAGATCCTCGCCGCGTTAATCAAAAAAGA‑TGCCCGAGCGGCG‑AAGCTGGCAATGTGGC‑AGCATCTGG‑AAAACGTTAAGCAACGTCTGCTgg                                                                                                                   <  1:19968/251‑1 (MQ=255)                                                                                                                                 tCCATCTCGCTATTGCCGAAGCAACGCATAACAGCATGCTGGTGGAGCTGTTCCGTCAGTCCTGGCAGTGGCGGG‑GAAACAATCCCATGTGGATCCAGTTGCACAGCCCTCTTGATGACAGCCTGTATCGCAAAGAG‑GGGGTGGGCGGTTACAAAAAAAACCTCCCCGCCTTAATCAAAAAAAA‑AGGCCGAGCGGGG‑GAGCCGGCCATGGGGCCGGCA‑CTGG‑AAAAAGTTAAATAACGGCTGCTGGGAttt                                                                                                              >  2:265558/1‑250 (MQ=255)                                                                                                                                  ccATCTCGCTATTGCCGAAGCAACGCATAACAGCATGCTGGTGGAGCTGTTCCGTCAGTCCTGGCAGTGGCGGG‑AAAACAATCCAATGTGGATCCAGTTGCACAGCCATCTGGATGACAGCCTGTATCGCAAAGAG‑TGGTTGGGCGATCACAAACAGATCCTCGCCGCGTTAATCAAAAAAGA‑TGCCCGAGCGGCG‑AAGCTGGCAATGTGGC‑AGCATCTGG‑AAAACGTTAAGCAACGTCTGCTGGAATtc                                                                                                              <  1:179527/250‑1 (MQ=255)                                                                                                                                   cATCTCGCTATTGCCGAAGCAACGCATAACAGCATGCTGGTGGAGCTGTTCCGTCAGTCCTGGCAGTGGCGGG‑AAAACAATCCAATGTGGATCCAGTTGCACAGCCATCTGGATGACAGCCTGTATCGCAAAGAG‑TGGTTGGGCGATCACAAACAGATCCTCGCCGCGTTAATCAAAAAAGA‑TGCCCGAGCGGCG‑AAGCTGGCAATGTGGC‑AGCATCTGG‑AAAACGTTAAGCAACGTCTGCTGGAATtctc                                                                                                            <  2:208997/251‑1 (MQ=255)                                                                                                                                       tcGCTATTGCCGAAGCAACGCATAACAGCATGCTGGTGGAGCTGTTCCGTCAGTCCTGGCAGTGGCGGG‑AAAAAAATCCAAAGTGGGTCCAGGTGCACAGCCATCTGGGTGAAAGCCTGTATCGCCAAGAG‑GGGGTGGGGGATCACAAACAGAACCTCCCCGCGGTAATCAAAAAAAA‑AGCCCGAGCGGGGGAAG‑TGGCCATGTGGG‑AGCATCTGG‑AAAAAGTTAAACAACGACTGCTGGGATTCTCGAAc                                                                                                        >  1:20792/1‑251 (MQ=255)                                                                                                                                        cGCTATTGCCGAAGCAACGCATAACAGCATGCTGGTGGAGCTGTTCCGTCAGTCCTGGCAGTGGCGGG‑AAAACAATCCAATGTGGATCCAGTTGCACAGCCATCTGGATGACAGCCTGTATCGCAAAGAG‑TGGTTGGGCGATCACAAACAGATCCTCGCCGCGTTAATCAAAAAAGA‑TGCCCGAGCGGCG‑AAGCTGGCAATGTGGC‑AGCATCTGG‑AAAACGTTAAGCAACGTCTGCTGGAATTCTCg                                                                                                           <  1:260839/247‑1 (MQ=255)                                                                                                                                                              aaCAGCATGCTGGTGGAGCTGTTCCGTCAGTCCTGGCAGTGGCGGG‑AAAAAAAACCCAAATGGGTCCAGGTGCACCGCCCTCTTGCTGAAAGCCCGTATTGCAAAGAG‑GGGGTGGGCGGTCACAAAAAAAATCTCGCCGCGTTAAACAAAAAAAAAGGCCCG‑GCGGGG‑AAGCTGGCAATGTGGG‑AGCCTCTGGTAAAAAGT‑AAGCAACGTCTCCTGGAAATATCCAACAGTGACGACATTTTTTTTGAttg                                                                                 >  2:336983/1‑249 (MQ=255)                                                                                                                                                                                                       gCGGG‑AAAACAATCCAATGTGGATCCAGTTGCACAGCCATCTGGATGACAGCCTGTATCGCAAAGAG‑TGGTTGGGCGATCACAAACAGATCCTCGCCGCGTTAATCAAAAAAGA‑TGCCCGAGCGGCG‑AAGCTGGCAATGTGGC‑AGCATCTGG‑AAAACGTTAAGCAACGTCTGCTGGAATTCTCGAACGTTGACGATATTTATTTTGATGGCTATCTGTTTGATTCATGGCCGCTGGATAAAGTCGACGCCt                                        <  1:25909/251‑1 (MQ=255)                                                                                                                                                                                                                                    ttGCACAGCCATCTGGATGACAGCCTGTATCGCAAAGAG‑TGGTTGGGCGATCACAAACAGATCCTCGCCGCGTTAATCAAAAAAGA‑TGCCCGAGCGGCG‑AAGCTGGCAATGTGGC‑AGCATCTGG‑AAAACGTTAAGCAACGTCTGCTGGAATTCTCGAACGTTGACGATATTTATTTTGATGGCTATCTGTTTGATTCATGGCCGCTGGATAAAGTCGACGCCTGACTTATTATAATAAGCGCAAGGGTaa             >  1:324213/1‑250 (MQ=255)                                                                                                                                                                                                                                         caGCCATCTGGATGACAGCCTGTATCGCAAAGAG‑TGGTTGGGCGATCACAAACAGATCCTCGCCGCGTTAATCAAAAAAGA‑TGCCCGAGCGGCG‑AAGCTGGCAATGTGGC‑AGCATCTGG‑AAAACGTTAAGCAACGTCTGCTGGAATTCTCGAACGTTGACGATATTTATTTTGATGGCTATCTGTTTGATTCATGGCCGCTGGATAAAGTCGACGCCTGACTTATTATAATAAGCGCAAGGGTAAACGTTc       >  2:33673/1‑251 (MQ=255)                                                                                                                                                                                                                                              aTCTGGATGACAGCCTGTATCGCAAAGAG‑TGGTTGGGCGATCACAAACAGATCCTCGCCGCGTTAATCAAAAAAGA‑TGCCCGAGCGGCG‑AAGCTGGCAATGTGGC‑AGCATCTGG‑AAAACGTTAAGCAACGTCTGCTGGAATTCTCGAACGTTGACGATATTTATTTTGATGGCTATCTGTTTGATTCATGGCCGCTGGATAAAGTCGACGCCTGACTTATTATAATAAGCGCAAGGGTAAACGTTCCTTgc  >  1:175366/1‑251 (MQ=255)                                                                                                                                                                                                                                                      |                                                                                                                                                                                                                                                        CATCGCCGAGTTTGCCGCTTTGCAGGCTACCCGCGAAGATATCGTCAAAATGCGTCAGGCATTGCAACTGGAAGAGCGTGAACTGGCTTCCAGTGCGCCGGGCAGCAGCGAAAGCGGTGACATGCAGTTCCATCTCGCTATTGCCGAAGCAACGCATAACAGCATGCTGGTGGAGCTGTTCCGTCAGTCCTGGCAGTGGCGGG‑AAAACAATCCAATGTGGATCCAGTTGCACAGCCATCTGGATGACAGCCTGTATCGCAAAGAG‑TGGTTGGGCGATCACAAACAGATCCTCGCCGCGTTAATCAAAAAAGA‑TGCCCGAGCGGCG‑AAGCTGGCAATGTGGC‑AGCATCTGG‑AAAACGTTAAGCAACGTCTGCTGGAATTCTCGAACGTTGACGATATTTATTTTGATGGCTATCTGTTTGATTCATGGCCGCTGGATAAAGTCGACGCCTGACTTATTATAATAAGCGCAAGGGTAAACGTTCCTTGC  >  NC_000913/4554899‑4555385

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.