mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.39.0
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 367,573 | 0 | G | A | 59.0% | 51.8 / 95.8 | 85 | intergenic (‑63/+14) | lacI/mhpR | DNA‑binding transcriptional repressor LacI/DNA‑binding transcriptional activator MhpR |
| * | NC_000913 | 302,186 | 0 | C | T | 54.4% | 22.5 / 109.1 | 80 | E130K (GAG→AAG) | paoA | aldehyde dehydrogenase, Fe‑S subunit |
| * | NC_000913 | 802,118 | 0 | A | C | 53.3% | 7.0 / 14.9 | 15 | T78P (ACC→CCC) | ybhI | putative tricarboxylate transporter |
| * | NC_000913 | 244,565 | 0 | A | T | 50.0% | 9.4 / 100.1 | 69 | Q80L (CAG→CTG) | yafJ | putative glutamine amidotransferase YafJ |
| * | NC_000913 | 3,355,442 | 0 | G | A | 30.9% | 84.7 / 22.6 | 55 | E240K (GAA→AAA) | gltB | glutamate synthase subunit GltB |
| * | NC_000913 | 366,526 | 0 | T | G | 29.2% | 141.6 / 11.1 | 72 | T329P (ACC→CCC) | lacI | DNA‑binding transcriptional repressor LacI |
| * | NC_000913 | 354,288 | 0 | T | G | 28.6% | 97.6 / 11.8 | 56 | V528G (GTG→GGG) | prpE | propionyl‑CoA synthetase |
| * | NC_000913 | 288,382 | 0 | A | C | 28.4% | 150.9 / 10.5 | 89 | T532P (ACC→CCC) | yagH | putative xylosidase/arabinosidase |
| * | NC_000913 | 300,126 | 0 | A | G | 28.1% | 122.6 / 15.8 | 85 | L270P (CTC→CCC) | paoC | aldehyde dehydrogenase: molybdenum cofactor‑binding subunit |
| * | NC_000913 | 2,930,047 | 0 | G | T | 26.1% | 79.4 / 11.9 | 46 | G158C (GGC→TGC) | sdaB | L‑serine deaminase II |
| * | NC_000913 | 350,554 | 0 | G | A | 24.1% | 122.7 / 11.5 | 59 | K181K (AAG→AAA) | prpC | 2‑methylcitrate synthase |
| * | NC_000913 | 651,267 | 0 | A | T | 22.9% | 147.8 / 15.4 | 70 | L197* (TTA→TAA) | citC | citrate lyase synthetase |
| * | NC_000913 | 634,315 | 0 | A | G | 22.4% | 173.9 / 10.4 | 76 | K244E (AAA→GAA) | ybdL | methionine transaminase |
| * | NC_000913 | 375,621 | 0 | A | G | 22.1% | 175.1 / 11.1 | 77 | I55V (ATA→GTA) | mhpT | 3‑hydroxyphenylpropionate/3‑ hydroxycinnamate:H(+) symporter |
| * | NC_000913 | 377,402 | 0 | G | A | 21.2% | 126.9 / 29.1 | 67 | intergenic (+91/+133) | yaiL/frmB | DUF2058 domain‑containing protein YaiL/S‑formylglutathione hydrolase FrmB |
| * | NC_000913 | 366,534 | 0 | C | T | 20.3% | 160.5 / 10.2 | 67 | R326K (AGA→AAA) | lacI | DNA‑binding transcriptional repressor LacI |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 607765 = | 24 (0.690) | 6 (0.170) | 6/488 | 2.4 | 20.0% | noncoding (28/60 nt) | sokE | small RNA SokE |
| ? | NC_000913 | = 3722075 | NA (NA) | noncoding (1443/1443 nt) | IS150 | repeat region | |||||
| * | ? | NC_000913 | 2020326 = | 23 (0.660) | 5 (0.140) | 5/490 | 2.7 | 17.9% | coding (240/1005 nt) | fliM | flagellar motor switch protein FliM |
| ? | NC_000913 | = 3722075 | NA (NA) | noncoding (1443/1443 nt) | IS150 | repeat region | |||||
| * | ? | NC_000913 | = 607767 | 23 (0.670) | 4 (0.120) | 4/486 | 3.0 | 14.8% | noncoding (26/60 nt) | sokE | small RNA SokE |
| ? | NC_000913 | 3720633 = | NA (NA) | noncoding (1/1443 nt) | IS150 | repeat region | |||||