#=GENOME_DIFF	1.0
#=CREATED	10:24:33 29 Nov 2024
#=PROGRAM	breseq 0.39.0 
#=COMMAND	breseq -j 8 -o /ld1/breseq_work/20240527run10/CV71_S5_L001_R1R2_001 -r /ld1/E.coli_MG1655_ref/MG1655/ncbi_dataset/data/GCF_000005845.2/genomic.gbff /ld1/raw_sequence_data/20240527run10/CV71_S5_L001_R1_001.fastq.gz /ld1/raw_sequence_data/20240527run10/CV71_S5_L001_R2_001.fastq.gz
#=REFSEQ	/ld1/E.coli_MG1655_ref/MG1655/ncbi_dataset/data/GCF_000005845.2/genomic.gbff
#=READSEQ	/ld1/raw_sequence_data/20240527run10/CV71_S5_L001_R1_001.fastq.gz
#=READSEQ	/ld1/raw_sequence_data/20240527run10/CV71_S5_L001_R2_001.fastq.gz
#=CONVERTED-BASES	177868745
#=CONVERTED-READS	723941
#=INPUT-BASES	177876693
#=INPUT-READS	724162
#=MAPPED-BASES	160031711
#=MAPPED-READS	653358
DEL	1	362,376	NC_000913	62379	25896
SNP	2	181	NC_000913	89089	A
SNP	3	182	NC_000913	89103	C
SNP	4	183	NC_000913	89143	G
SNP	5	184	NC_000913	89145	T
SNP	6	185	NC_000913	89239	A
SNP	7	186	NC_000913	89241	A
SNP	8	187	NC_000913	89263	G
SNP	9	188	NC_000913	89316	C
SNP	10	189	NC_000913	89321	G
SNP	11	190	NC_000913	89471	G
SNP	12	191	NC_000913	89570	C
SNP	13	192	NC_000913	89699	C
SNP	14	193	NC_000913	89754	C
SNP	15	194	NC_000913	90432	G
SNP	16	195	NC_000913	90435	C
SNP	17	196	NC_000913	91904	A
SNP	18	197	NC_000913	91916	T
SNP	19	198	NC_000913	91922	A
SNP	20	199	NC_000913	91949	T
SNP	21	200	NC_000913	92096	T
SNP	22	201	NC_000913	92162	T
SNP	23	202	NC_000913	92327	T
SNP	24	203	NC_000913	92354	G
SNP	25	204	NC_000913	92687	G
SNP	26	205	NC_000913	92810	C
SNP	27	206	NC_000913	92843	G
SNP	28	207	NC_000913	94278	A
SNP	29	208	NC_000913	134256	T
SNP	30	210	NC_000913	246747	T
DEL	31	363,377	NC_000913	257908	776
SNP	32	211	NC_000913	284535	G
SNP	33	215	NC_000913	313543	A
DEL	34	364,382	NC_000913	366181	93
SNP	35	223	NC_000913	419294	G
SUB	36	224,225	NC_000913	480295	2	AA
SNP	37	226	NC_000913	553161	A
SNP	38	229	NC_000913	690948	A
SNP	39	230	NC_000913	700038	A
MOB	40	383,385	NC_000913	789812	IS2	-1	5
SNP	41	231	NC_000913	791688	A
SUB	42	233,234	NC_000913	809217	2	AG
SNP	43	235	NC_000913	917966	A
SNP	44	236	NC_000913	968837	A
SNP	45	237	NC_000913	1003243	T
SNP	46	238	NC_000913	1040126	T
SNP	47	239	NC_000913	1061935	A
MOB	48	384,388	NC_000913	1093481	IS2	1	5
SNP	49	240	NC_000913	1100070	A
SUB	50	241,242	NC_000913	1111727	2	TT
SNP	51	243	NC_000913	1123556	T
SNP	52	244	NC_000913	1169836	G
SNP	53	245	NC_000913	1189980	G
SNP	54	246	NC_000913	1196220	T
SNP	55	247	NC_000913	1196232	T
SNP	56	248	NC_000913	1196245	C
SNP	57	249	NC_000913	1196247	G
SNP	58	250	NC_000913	1196277	T
SNP	59	251	NC_000913	1196280	C
SNP	60	252	NC_000913	1196283	G
SNP	61	253	NC_000913	1196292	T
SNP	62	254	NC_000913	1196304	A
SNP	63	255	NC_000913	1196316	A
SNP	64	256	NC_000913	1196325	G
MOB	65	378,390	NC_000913	1301050	IS1	1	9
SNP	66	257	NC_000913	1301992	T
SNP	67	258	NC_000913	1306736	G
SNP	68	259	NC_000913	1310770	G
SNP	69	260	NC_000913	1331947	T
SNP	70	261	NC_000913	1337394	G
SNP	71	262	NC_000913	1357202	T
SNP	72	263	NC_000913	1358859	C
SNP	73	264	NC_000913	1412897	A
SNP	74	265	NC_000913	1428087	T
MOB	75	391,392	NC_000913	1434343	IS5	1	4
SNP	76	266	NC_000913	1437145	A
DEL	77	366,395	NC_000913	1588756	970
SNP	78	267	NC_000913	1598172	G
SNP	79	268	NC_000913	1610076	G
SNP	80	269	NC_000913	1610440	T
SNP	81	270	NC_000913	1632837	G
SNP	82	271	NC_000913	1643679	T
MOB	83	396,397	NC_000913	1651851	IS2	-1	5
SNP	84	272	NC_000913	1652331	C
DEL	85	367,398	NC_000913	1704350	390
SNP	86	273	NC_000913	1721136	T
SNP	87	274	NC_000913	1738377	T
SNP	88	275	NC_000913	1776715	T
SNP	89	276	NC_000913	1856968	A
SNP	90	277	NC_000913	1894839	C
SNP	91	278	NC_000913	1975224	A
INS	92	399	NC_000913	1977451	CTGGAAAGTTGCAG	repeat_length=14	repeat_new_copies=2	repeat_ref_copies=1	repeat_seq=CTGGAAAGTTGCAG
SNP	93	279	NC_000913	1987499	A
SNP	94	280	NC_000913	2003276	C
SNP	95	281	NC_000913	2003462	A
SNP	96	282	NC_000913	2040433	A
DEL	97	283,284	NC_000913	2173363	2
SNP	98	285	NC_000913	2175991	A
SNP	99	286	NC_000913	2178759	C
SNP	100	287	NC_000913	2188087	C
DEL	101	369,405	NC_000913	2238416	19
DEL	102	288	NC_000913	2263441	1
MOB	103	401,406	NC_000913	2382507	IS1	1	9
SNP	104	289	NC_000913	2384808	T
SNP	105	290	NC_000913	2410419	A
SNP	106	291	NC_000913	2484827	T
SNP	107	292	NC_000913	2700747	A
SNP	108	293	NC_000913	2748396	A
SNP	109	294	NC_000913	2756976	A
SNP	110	295	NC_000913	2780060	A
SNP	111	296	NC_000913	2792209	A
SNP	112	297	NC_000913	2800435	A
MOB	113	407,408	NC_000913	2805802	IS1	1	9
SNP	114	298	NC_000913	2810925	A
SNP	115	299	NC_000913	2817850	A
SNP	116	300	NC_000913	2823288	T
SNP	117	301	NC_000913	2863773	T
SNP	118	302	NC_000913	2878077	T
SNP	119	303	NC_000913	2889365	T
SNP	120	304	NC_000913	2905825	T
MOB	121	409,410	NC_000913	2913392	IS2	-1	5
SNP	122	305	NC_000913	2926292	T
DEL	123	370,411	NC_000913	2942765	8
SNP	124	307	NC_000913	3028546	A
SNP	125	308	NC_000913	3050472	A
SNP	126	309	NC_000913	3061916	T
SNP	127	310	NC_000913	3065449	A
SNP	128	311	NC_000913	3065861	A
MOB	129	412,413	NC_000913	3078723	IS5	1	4
SNP	130	312	NC_000913	3089260	C
SNP	131	313	NC_000913	3090968	A
SUB	132	314,315	NC_000913	3336411	2	AT
SNP	133	317	NC_000913	3367944	A
SNP	134	318	NC_000913	3388041	G
SNP	135	319	NC_000913	3399929	T
SNP	136	320	NC_000913	3436697	A
SNP	137	321	NC_000913	3449779	A
SNP	138	322	NC_000913	3468768	T
SNP	139	323	NC_000913	3474425	C
SNP	140	324	NC_000913	3543877	A
INS	141	325	NC_000913	3560455	G
SNP	142	326	NC_000913	3629921	T
SNP	143	327	NC_000913	3682515	T
SNP	144	328	NC_000913	3696909	A
SNP	145	329	NC_000913	3707947	A
SNP	146	330	NC_000913	3725176	G
SNP	147	331	NC_000913	3761230	A
SNP	148	332	NC_000913	3771979	T
INS	149	333	NC_000913	3815883	C
INS	150	419	NC_000913	3822651	CAGGAT	repeat_length=6	repeat_new_copies=2	repeat_ref_copies=1	repeat_seq=CAGGAT
SNP	151	334	NC_000913	3823162	T
SNP	152	335	NC_000913	3869637	A
SNP	153	336	NC_000913	3878536	A
SNP	154	337	NC_000913	3883678	A
SNP	155	338	NC_000913	3912074	A
SNP	156	339	NC_000913	3931069	T
MOB	157	420,421	NC_000913	3938983	IS2	-1	5
SNP	158	340	NC_000913	3955304	T
SNP	159	341	NC_000913	3988115	T
SNP	160	342	NC_000913	3993531	C
SNP	161	343	NC_000913	3996049	A
SNP	162	344	NC_000913	4011802	T
MOB	163	400,414	NC_000913	4069379	IS1	1	9
SNP	164	345	NC_000913	4084903	G
SNP	165	346	NC_000913	4092703	G
SNP	166	347	NC_000913	4210041	A
SNP	167	348	NC_000913	4272878	G
SNP	168	349	NC_000913	4276716	T
MOB	169	402,416	NC_000913	4289448	IS1	1	9
INS	170	350,351	NC_000913	4296381	GC
SNP	171	352	NC_000913	4337390	T
SNP	172	353	NC_000913	4338916	T
SNP	173	354	NC_000913	4349993	T
SNP	174	355	NC_000913	4375354	A
SNP	175	356	NC_000913	4380367	T
SNP	176	357	NC_000913	4425688	A
SNP	177	358	NC_000913	4425696	A
SUB	178	359,360	NC_000913	4436956	2	TT
MOB	179	417,418	NC_000913	4452701	IS150	1	3
SNP	180	361	NC_000913	4532409	G
RA	181	.	NC_000913	89089	0	C	A	consensus_score=89.9	frequency=1	major_base=A	major_cov=10/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=10/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=10/16
RA	182	.	NC_000913	89103	0	G	C	consensus_score=82.6	frequency=1	major_base=C	major_cov=6/18	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=6/18	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/18
RA	183	.	NC_000913	89143	0	A	G	consensus_score=84.3	frequency=1	major_base=G	major_cov=5/19	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=5/19	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=5/19
RA	184	.	NC_000913	89145	0	G	T	bias_e_value=4641650	bias_p_value=1	consensus_score=78.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=5/18	major_frequency=9.583e-01	minor_base=G	minor_cov=0/1	new_cov=5/18	polymorphism_frequency=9.583e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=5/19
RA	185	.	NC_000913	89239	0	G	A	consensus_score=98.1	frequency=1	major_base=A	major_cov=11/17	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=11/17	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=11/17
RA	186	.	NC_000913	89241	0	C	A	consensus_score=97.6	frequency=1	major_base=A	major_cov=11/17	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=11/17	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=11/17
RA	187	.	NC_000913	89263	0	A	G	consensus_score=119.4	frequency=1	major_base=G	major_cov=14/18	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=14/18	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=14/18
RA	188	.	NC_000913	89316	0	T	C	bias_e_value=4641650	bias_p_value=1	consensus_score=111.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=15/15	major_frequency=9.677e-01	minor_base=A	minor_cov=1/0	new_cov=15/15	polymorphism_frequency=9.677e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/15
RA	189	.	NC_000913	89321	0	A	G	consensus_score=115.8	frequency=1	major_base=G	major_cov=16/15	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/15	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/15
RA	190	.	NC_000913	89471	0	T	G	consensus_score=102.5	frequency=1	major_base=G	major_cov=15/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=15/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/13
RA	191	.	NC_000913	89570	0	A	C	consensus_score=92.5	frequency=1	major_base=C	major_cov=14/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=14/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=14/12
RA	192	.	NC_000913	89699	0	T	C	bias_e_value=4054890	bias_p_value=0.873588	consensus_score=109.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.541379	major_base=C	major_cov=21/11	major_frequency=9.697e-01	minor_base=T	minor_cov=1/0	new_cov=21/11	polymorphism_frequency=9.697e-01	polymorphism_score=-3.7	prediction=consensus	ref_cov=1/0	total_cov=22/11
RA	193	.	NC_000913	89754	0	T	C	consensus_score=121.2	frequency=1	major_base=C	major_cov=21/11	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/11	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/11
RA	194	.	NC_000913	90432	0	A	G	consensus_score=164.3	frequency=1	major_base=G	major_cov=18/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=18/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=18/28
RA	195	.	NC_000913	90435	0	T	C	bias_e_value=4641480	bias_p_value=0.999962	consensus_score=156.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.991342	major_base=C	major_cov=18/27	major_frequency=9.783e-01	minor_base=G	minor_cov=0/1	new_cov=18/27	polymorphism_frequency=9.783e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=18/28
RA	196	.	NC_000913	91904	0	G	A	bias_e_value=4641650	bias_p_value=1	consensus_score=126.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=16/19	major_frequency=9.722e-01	minor_base=C	minor_cov=0/1	new_cov=16/19	polymorphism_frequency=9.722e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/20
RA	197	.	NC_000913	91916	0	C	T	bias_e_value=4640690	bias_p_value=0.999792	consensus_score=132.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.979696	major_base=T	major_cov=18/21	major_frequency=9.750e-01	minor_base=G	minor_cov=0/1	new_cov=18/21	polymorphism_frequency=9.750e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=18/22
RA	198	.	NC_000913	91922	0	G	A	consensus_score=130.1	frequency=1	major_base=A	major_cov=15/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=15/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/22
RA	199	.	NC_000913	91949	0	C	T	consensus_score=130.7	frequency=1	major_base=T	major_cov=16/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/23
RA	200	.	NC_000913	92096	0	A	T	consensus_score=144.0	frequency=1	major_base=T	major_cov=17/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=17/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/21
RA	201	.	NC_000913	92162	0	C	T	consensus_score=152.9	frequency=1	major_base=T	major_cov=19/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/21
RA	202	.	NC_000913	92327	0	G	T	consensus_score=197.8	frequency=1	major_base=T	major_cov=24/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/29
RA	203	.	NC_000913	92354	0	A	G	bias_e_value=4641650	bias_p_value=1	consensus_score=183.5	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=24/24	major_frequency=9.796e-01	minor_base=T	minor_cov=0/1	new_cov=24/24	polymorphism_frequency=9.796e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/25
RA	204	.	NC_000913	92687	0	A	G	consensus_score=104.4	frequency=1	major_base=G	major_cov=14/15	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=14/15	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=14/15
RA	205	.	NC_000913	92810	0	T	C	consensus_score=126.8	frequency=1	major_base=C	major_cov=16/19	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/19	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/19
RA	206	.	NC_000913	92843	0	A	G	consensus_score=130.6	frequency=1	major_base=G	major_cov=16/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/21
RA	207	.	NC_000913	94278	0	G	A	consensus_score=146.7	frequency=1	major_base=A	major_cov=19/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/23
RA	208	.	NC_000913	134256	0	G	T	consensus_score=150.7	frequency=1	major_base=T	major_cov=12/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=12/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=12/30
RA	209	.	NC_000913	244565	0	A	T	bias_e_value=4641650	bias_p_value=1	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=9.4	fisher_strand_p_value=1	frequency=5.000e-01	ks_quality_p_value=1	major_base=T	major_cov=18/16	major_frequency=5.000e-01	minor_base=A	minor_cov=19/15	new_cov=18/16	polymorphism_frequency=5.000e-01	polymorphism_score=100.1	prediction=polymorphism	ref_cov=19/15	total_cov=37/32
RA	210	.	NC_000913	246747	0	G	T	consensus_score=247.4	frequency=1	major_base=T	major_cov=41/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/27
RA	211	.	NC_000913	284535	0	T	G	consensus_score=691.5	frequency=1	major_base=G	major_cov=79/108	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=79/108	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=79/108
RA	212	.	NC_000913	288382	0	A	C	bias_e_value=24.3954	bias_p_value=5.25575e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=150.9	fisher_strand_p_value=3.30052e-07	frequency=2.841e-01	ks_quality_p_value=1	major_base=A	major_cov=34/29	major_frequency=7.159e-01	minor_base=C	minor_cov=0/25	new_cov=0/25	polymorphism_frequency=2.841e-01	polymorphism_score=10.5	prediction=polymorphism	ref_cov=34/29	total_cov=34/55
RA	213	.	NC_000913	300126	0	A	G	bias_e_value=0.68584	bias_p_value=1.47758e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=122.6	fisher_strand_p_value=7.49706e-09	frequency=2.805e-01	ks_quality_p_value=1	major_base=A	major_cov=16/43	major_frequency=7.195e-01	minor_base=G	minor_cov=22/1	new_cov=22/1	polymorphism_frequency=2.805e-01	polymorphism_score=15.8	prediction=polymorphism	ref_cov=16/43	total_cov=40/45
RA	214	.	NC_000913	302186	0	C	T	bias_e_value=2985110	bias_p_value=0.643114	consensus_reject=FREQUENCY_CUTOFF	consensus_score=22.5	fisher_strand_p_value=0.372953	frequency=5.443e-01	ks_quality_p_value=0.764947	major_base=T	major_cov=17/26	major_frequency=5.443e-01	minor_base=C	minor_cov=18/18	new_cov=17/26	polymorphism_frequency=5.443e-01	polymorphism_score=109.1	prediction=polymorphism	ref_cov=18/18	total_cov=36/44
RA	215	.	NC_000913	313543	0	G	A	consensus_score=181.3	frequency=1	major_base=A	major_cov=25/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/25
RA	216	.	NC_000913	350554	0	G	A	bias_e_value=14.772	bias_p_value=3.18248e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=122.7	fisher_strand_p_value=1.93362e-07	frequency=2.414e-01	ks_quality_p_value=1	major_base=G	major_cov=10/34	major_frequency=7.586e-01	minor_base=A	minor_cov=14/0	new_cov=14/0	polymorphism_frequency=2.414e-01	polymorphism_score=11.5	prediction=polymorphism	ref_cov=10/34	total_cov=25/34
RA	217	.	NC_000913	354288	0	T	G	bias_e_value=4.05968	bias_p_value=8.7462e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=97.6	fisher_strand_p_value=4.90523e-08	frequency=2.857e-01	ks_quality_p_value=1	major_base=T	major_cov=9/31	major_frequency=7.143e-01	minor_base=G	minor_cov=16/0	new_cov=16/0	polymorphism_frequency=2.857e-01	polymorphism_score=11.8	prediction=polymorphism	ref_cov=9/31	total_cov=25/31
RA	218	.	NC_000913	366526	0	T	G	bias_e_value=1.61102e-05	bias_p_value=3.47079e-12	consensus_reject=FREQUENCY_CUTOFF	consensus_score=141.6	fisher_strand_p_value=1.12635e-13	frequency=2.917e-01	ks_quality_p_value=1	major_base=T	major_cov=3/48	major_frequency=7.083e-01	minor_base=G	minor_cov=20/1	new_cov=20/1	polymorphism_frequency=2.917e-01	polymorphism_score=11.1	prediction=polymorphism	ref_cov=3/48	total_cov=23/49
RA	219	.	NC_000913	366534	0	C	T	bias_e_value=0.201298	bias_p_value=4.33678e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=160.5	fisher_strand_p_value=2.06533e-09	frequency=2.031e-01	ks_quality_p_value=1	major_base=C	major_cov=6/45	major_frequency=7.969e-01	minor_base=T	minor_cov=13/0	new_cov=13/0	polymorphism_frequency=2.031e-01	polymorphism_score=10.2	prediction=polymorphism	ref_cov=6/45	total_cov=22/45
RA	220	.	NC_000913	367573	0	G	A	bias_e_value=728765	bias_p_value=0.157005	consensus_reject=FREQUENCY_CUTOFF	consensus_score=51.8	fisher_strand_p_value=0.0430911	frequency=5.904e-01	ks_quality_p_value=0.844759	major_base=A	major_cov=32/17	major_frequency=5.904e-01	minor_base=G	minor_cov=14/20	new_cov=32/17	polymorphism_frequency=5.904e-01	polymorphism_score=95.8	prediction=polymorphism	ref_cov=14/20	total_cov=47/38
RA	221	.	NC_000913	375621	0	A	G	bias_e_value=3.94397	bias_p_value=8.49691e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=175.1	fisher_strand_p_value=4.75724e-08	frequency=2.208e-01	ks_quality_p_value=1	major_base=A	major_cov=17/43	major_frequency=7.792e-01	minor_base=G	minor_cov=17/0	new_cov=17/0	polymorphism_frequency=2.208e-01	polymorphism_score=11.1	prediction=polymorphism	ref_cov=17/43	total_cov=34/43
RA	222	.	NC_000913	377402	0	G	A	bias_e_value=1217740	bias_p_value=0.262351	consensus_reject=FREQUENCY_CUTOFF	consensus_score=126.9	fisher_strand_p_value=0.227807	frequency=2.121e-01	ks_quality_p_value=0.317582	major_base=G	major_cov=26/26	major_frequency=7.879e-01	minor_base=A	minor_cov=10/4	new_cov=10/4	polymorphism_frequency=2.121e-01	polymorphism_score=29.1	prediction=polymorphism	ref_cov=26/26	total_cov=36/31
RA	223	.	NC_000913	419294	0	A	G	consensus_score=101.0	frequency=1	major_base=G	major_cov=16/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/13
RA	224	.	NC_000913	480295	0	G	A	consensus_score=98.1	frequency=1	major_base=A	major_cov=10/17	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=10/17	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=10/17
RA	225	.	NC_000913	480296	0	G	A	consensus_score=90.8	frequency=1	major_base=A	major_cov=10/17	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=10/17	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=10/17
RA	226	.	NC_000913	553161	0	G	A	consensus_score=87.5	frequency=1	major_base=A	major_cov=12/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=12/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=12/13
RA	227	.	NC_000913	634315	0	A	G	bias_e_value=4.99074	bias_p_value=1.07521e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=173.9	fisher_strand_p_value=6.10512e-08	frequency=2.237e-01	ks_quality_p_value=1	major_base=A	major_cov=17/42	major_frequency=7.763e-01	minor_base=G	minor_cov=17/0	new_cov=17/0	polymorphism_frequency=2.237e-01	polymorphism_score=10.4	prediction=polymorphism	ref_cov=17/42	total_cov=34/42
RA	228	.	NC_000913	651267	0	A	T	bias_e_value=18.1168	bias_p_value=3.9031e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=147.8	fisher_strand_p_value=2.42362e-07	frequency=2.286e-01	ks_quality_p_value=0.99157	major_base=A	major_cov=16/38	major_frequency=7.714e-01	minor_base=T	minor_cov=16/0	new_cov=16/0	polymorphism_frequency=2.286e-01	polymorphism_score=15.4	prediction=polymorphism	ref_cov=16/38	total_cov=32/38
RA	229	.	NC_000913	690948	0	G	A	consensus_score=108.3	frequency=1	major_base=A	major_cov=18/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=18/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=18/12
RA	230	.	NC_000913	700038	0	G	A	bias_e_value=3466620	bias_p_value=0.746851	consensus_score=66.5	fisher_strand_p_value=0.380952	frequency=1	ks_quality_p_value=0.995249	major_base=A	major_cov=13/7	major_frequency=9.524e-01	minor_base=G	minor_cov=0/1	new_cov=13/7	polymorphism_frequency=9.524e-01	polymorphism_score=-4.6	prediction=consensus	ref_cov=0/1	total_cov=13/8
RA	231	.	NC_000913	791688	0	G	A	consensus_score=142.2	frequency=1	major_base=A	major_cov=18/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=18/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=18/22
RA	232	.	NC_000913	802118	0	A	C	bias_e_value=1540.54	bias_p_value=0.000331894	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=7.0	fisher_strand_p_value=0.00699301	frequency=5.333e-01	ks_quality_p_value=0.00414557	major_base=C	major_cov=2/6	major_frequency=5.333e-01	minor_base=A	minor_cov=7/0	new_cov=2/6	polymorphism_frequency=5.333e-01	polymorphism_score=14.9	prediction=polymorphism	ref_cov=7/0	total_cov=9/6
RA	233	.	NC_000913	809217	0	C	A	consensus_score=132.8	frequency=1	major_base=A	major_cov=15/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=15/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/22
RA	234	.	NC_000913	809218	0	A	G	consensus_score=139.7	frequency=1	major_base=G	major_cov=15/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=15/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/22
RA	235	.	NC_000913	917966	0	G	A	bias_e_value=4641650	bias_p_value=1	consensus_score=119.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=17/15	major_frequency=9.697e-01	minor_base=C	minor_cov=1/0	new_cov=17/15	polymorphism_frequency=9.697e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=18/15
RA	236	.	NC_000913	968837	0	G	A	consensus_score=101.9	frequency=1	major_base=A	major_cov=14/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=14/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=14/16
RA	237	.	NC_000913	1003243	0	G	T	bias_e_value=2017110	bias_p_value=0.434568	consensus_score=69.4	fisher_strand_p_value=0.15	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=8/15	major_frequency=9.200e-01	minor_base=G	minor_cov=2/0	new_cov=8/15	polymorphism_frequency=9.200e-01	polymorphism_score=NA	prediction=consensus	ref_cov=2/0	total_cov=10/15
RA	238	.	NC_000913	1040126	0	G	T	consensus_score=128.4	frequency=1	major_base=T	major_cov=16/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/21
RA	239	.	NC_000913	1061935	0	G	A	bias_e_value=3876160	bias_p_value=0.835083	consensus_score=80.7	fisher_strand_p_value=0.491935	frequency=1	ks_quality_p_value=0.983471	major_base=A	major_cov=14/16	major_frequency=9.375e-01	minor_base=C	minor_cov=0/2	new_cov=14/16	polymorphism_frequency=9.375e-01	polymorphism_score=-6.1	prediction=consensus	ref_cov=0/0	total_cov=14/18
RA	240	.	NC_000913	1100070	0	G	A	consensus_score=113.1	frequency=1	major_base=A	major_cov=19/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/13
RA	241	.	NC_000913	1111727	0	C	T	consensus_score=150.7	frequency=1	major_base=T	major_cov=20/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/22
RA	242	.	NC_000913	1111728	0	C	T	consensus_score=154.2	frequency=1	major_base=T	major_cov=20/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/22
RA	243	.	NC_000913	1123556	0	C	T	consensus_score=89.1	frequency=1	major_base=T	major_cov=15/10	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=15/10	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/10
RA	244	.	NC_000913	1169836	0	A	G	consensus_score=105.2	frequency=1	major_base=G	major_cov=15/14	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=15/14	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/14
RA	245	.	NC_000913	1189980	0	A	G	bias_e_value=4641650	bias_p_value=1	consensus_score=64.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=9/8	major_frequency=9.444e-01	minor_base=T	minor_cov=0/1	new_cov=9/8	polymorphism_frequency=9.444e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=9/9
RA	246	.	NC_000913	1196220	0	C	T	consensus_score=53.9	frequency=1	major_base=T	major_cov=6/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=6/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/13
RA	247	.	NC_000913	1196232	0	C	T	consensus_score=44.0	frequency=1	major_base=T	major_cov=5/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=5/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=5/12
RA	248	.	NC_000913	1196245	0	T	C	bias_e_value=3137690	bias_p_value=0.675985	consensus_score=38.5	fisher_strand_p_value=0.3125	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=4/11	major_frequency=9.375e-01	minor_base=A	minor_cov=1/0	new_cov=4/11	polymorphism_frequency=9.375e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=5/11
RA	249	.	NC_000913	1196247	0	A	G	consensus_score=40.3	frequency=1	major_base=G	major_cov=5/11	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=5/11	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=5/11
RA	250	.	NC_000913	1196277	0	C	T	consensus_score=21.1	frequency=1	major_base=T	major_cov=2/9	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=2/9	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=2/9
RA	251	.	NC_000913	1196280	0	G	C	consensus_score=22.5	frequency=1	major_base=C	major_cov=2/9	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=2/9	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=2/9
RA	252	.	NC_000913	1196283	0	A	G	consensus_score=21.5	frequency=1	major_base=G	major_cov=2/9	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=2/9	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=2/9
RA	253	.	NC_000913	1196292	0	C	T	consensus_score=16.9	frequency=1	major_base=T	major_cov=1/9	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=1/9	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=1/9
RA	254	.	NC_000913	1196304	0	G	A	consensus_score=18.8	frequency=1	major_base=A	major_cov=1/9	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=1/9	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=1/9
RA	255	.	NC_000913	1196316	0	T	A	consensus_score=18.2	frequency=1	major_base=A	major_cov=1/9	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=1/9	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=1/9
RA	256	.	NC_000913	1196325	0	A	G	consensus_score=13.0	frequency=1	major_base=G	major_cov=1/7	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=1/7	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=1/7
RA	257	.	NC_000913	1301992	0	A	T	consensus_score=77.9	frequency=1	major_base=T	major_cov=13/9	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=13/9	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=13/9
RA	258	.	NC_000913	1306736	0	T	G	bias_e_value=3664610	bias_p_value=0.789506	consensus_score=75.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.425993	major_base=G	major_cov=14/10	major_frequency=9.600e-01	minor_base=T	minor_cov=1/0	new_cov=14/10	polymorphism_frequency=9.600e-01	polymorphism_score=-3.1	prediction=consensus	ref_cov=1/0	total_cov=15/10
RA	259	.	NC_000913	1310770	0	A	G	consensus_score=62.5	frequency=1	major_base=G	major_cov=7/10	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=7/10	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=7/10
RA	260	.	NC_000913	1331947	0	C	T	bias_e_value=3756050	bias_p_value=0.809206	consensus_score=136.7	fisher_strand_p_value=0.47619	frequency=1	ks_quality_p_value=0.944679	major_base=T	major_cov=19/22	major_frequency=9.762e-01	minor_base=C	minor_cov=1/0	new_cov=19/22	polymorphism_frequency=9.762e-01	polymorphism_score=-7.0	prediction=consensus	ref_cov=1/0	total_cov=20/22
RA	261	.	NC_000913	1337394	0	A	G	consensus_score=100.2	frequency=1	major_base=G	major_cov=15/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=15/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/13
RA	262	.	NC_000913	1357202	0	C	T	consensus_score=82.4	frequency=1	major_base=T	major_cov=12/11	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=12/11	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=12/11
RA	263	.	NC_000913	1358859	0	T	C	bias_e_value=3566670	bias_p_value=0.768406	consensus_score=67.9	fisher_strand_p_value=0.409091	frequency=1	ks_quality_p_value=0.982833	major_base=C	major_cov=13/8	major_frequency=9.545e-01	minor_base=A	minor_cov=0/1	new_cov=13/8	polymorphism_frequency=9.545e-01	polymorphism_score=-6.7	prediction=consensus	ref_cov=0/0	total_cov=13/9
RA	264	.	NC_000913	1412897	0	G	A	consensus_score=90.6	frequency=1	major_base=A	major_cov=15/11	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=15/11	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/11
RA	265	.	NC_000913	1428087	0	C	T	consensus_score=117.0	frequency=1	major_base=T	major_cov=23/14	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=23/14	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/14
RA	266	.	NC_000913	1437145	0	T	A	consensus_score=35.9	frequency=1	major_base=A	major_cov=6/6	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=6/6	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/6
RA	267	.	NC_000913	1598172	0	T	G	consensus_score=24.6	frequency=1	major_base=G	major_cov=2/7	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=2/7	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=2/7
RA	268	.	NC_000913	1610076	0	T	G	consensus_score=85.9	frequency=1	major_base=G	major_cov=9/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=9/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=9/16
RA	269	.	NC_000913	1610440	0	C	T	bias_e_value=3674790	bias_p_value=0.791699	consensus_score=96.0	fisher_strand_p_value=0.428571	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=16/11	major_frequency=9.643e-01	minor_base=G	minor_cov=0/1	new_cov=16/11	polymorphism_frequency=9.643e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/12
RA	270	.	NC_000913	1632837	0	A	G	consensus_score=18.5	frequency=1	major_base=G	major_cov=5/4	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=5/4	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=5/4
RA	271	.	NC_000913	1643679	0	A	T	consensus_score=77.6	frequency=1	major_base=T	major_cov=8/14	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=8/14	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=8/14
RA	272	.	NC_000913	1652331	0	T	C	consensus_score=83.7	frequency=1	major_base=C	major_cov=9/14	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=9/14	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=9/14
RA	273	.	NC_000913	1721136	0	C	T	consensus_score=109.0	frequency=1	major_base=T	major_cov=19/11	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/11	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/11
RA	274	.	NC_000913	1738377	0	C	T	bias_e_value=3426660	bias_p_value=0.738241	consensus_score=93.3	fisher_strand_p_value=0.37037	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=17/9	major_frequency=9.630e-01	minor_base=G	minor_cov=0/1	new_cov=17/9	polymorphism_frequency=9.630e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/10
RA	275	.	NC_000913	1776715	0	A	T	consensus_score=68.2	frequency=1	major_base=T	major_cov=11/9	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=11/9	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=11/9
RA	276	.	NC_000913	1856968	0	T	A	consensus_score=79.5	frequency=1	major_base=A	major_cov=14/10	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=14/10	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=14/10
RA	277	.	NC_000913	1894839	0	T	C	bias_e_value=4641350	bias_p_value=0.999936	consensus_score=93.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.988669	major_base=C	major_cov=14/12	major_frequency=9.630e-01	minor_base=A	minor_cov=1/0	new_cov=14/12	polymorphism_frequency=9.630e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/12
RA	278	.	NC_000913	1975224	0	G	A	consensus_score=69.0	frequency=1	major_base=A	major_cov=6/15	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=6/15	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/15
RA	279	.	NC_000913	1987499	0	C	A	consensus_score=58.6	frequency=1	major_base=A	major_cov=8/10	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=8/10	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=8/10
RA	280	.	NC_000913	2003276	0	A	C	bias_e_value=4626750	bias_p_value=0.99679	consensus_score=129.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.920947	major_base=C	major_cov=17/17	major_frequency=9.714e-01	minor_base=A	minor_cov=1/0	new_cov=17/17	polymorphism_frequency=9.714e-01	polymorphism_score=-4.2	prediction=consensus	ref_cov=1/0	total_cov=18/17
RA	281	.	NC_000913	2003462	0	C	A	consensus_score=83.0	frequency=1	major_base=A	major_cov=10/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=10/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=10/13
RA	282	.	NC_000913	2040433	0	C	A	bias_e_value=4641650	bias_p_value=1	consensus_score=67.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=11/10	major_frequency=9.545e-01	minor_base=T	minor_cov=1/0	new_cov=11/10	polymorphism_frequency=9.545e-01	polymorphism_score=-5.8	prediction=consensus	ref_cov=0/0	total_cov=12/10
RA	283	.	NC_000913	2173363	0	C	.	bias_e_value=2096090	bias_p_value=0.451582	consensus_score=58.1	fisher_strand_p_value=0.3125	frequency=1	ks_quality_p_value=0.509156	major_base=.	major_cov=11/4	major_frequency=9.375e-01	minor_base=C	minor_cov=0/1	new_cov=11/4	polymorphism_frequency=9.375e-01	polymorphism_score=-1.4	prediction=consensus	ref_cov=0/1	total_cov=11/5
RA	284	.	NC_000913	2173364	0	C	.	bias_e_value=3137690	bias_p_value=0.675985	consensus_score=59.1	fisher_strand_p_value=0.3125	frequency=1	ks_quality_p_value=1	major_base=.	major_cov=11/4	major_frequency=9.375e-01	minor_base=C	minor_cov=0/1	new_cov=11/4	polymorphism_frequency=9.375e-01	polymorphism_score=-3.9	prediction=consensus	ref_cov=0/1	total_cov=11/5
RA	285	.	NC_000913	2175991	0	T	A	consensus_score=93.0	frequency=1	major_base=A	major_cov=20/7	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/7	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/7
RA	286	.	NC_000913	2178759	0	G	C	consensus_score=87.3	frequency=1	major_base=C	major_cov=7/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=7/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=7/16
RA	287	.	NC_000913	2188087	0	T	C	consensus_score=78.8	frequency=1	major_base=C	major_cov=11/11	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=11/11	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=11/11
RA	288	.	NC_000913	2263441	0	C	.	consensus_score=150.8	frequency=1	major_base=.	major_cov=9/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=9/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=9/23
RA	289	.	NC_000913	2384808	0	C	T	consensus_score=67.9	frequency=1	major_base=T	major_cov=11/10	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=11/10	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=11/10
RA	290	.	NC_000913	2410419	0	G	A	consensus_score=63.9	frequency=1	major_base=A	major_cov=12/8	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=12/8	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=12/8
RA	291	.	NC_000913	2484827	0	C	T	consensus_score=74.9	frequency=1	major_base=T	major_cov=8/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=8/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=8/13
RA	292	.	NC_000913	2700747	0	G	A	consensus_score=89.8	frequency=1	major_base=A	major_cov=16/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/12
RA	293	.	NC_000913	2748396	0	G	A	consensus_score=105.8	frequency=1	major_base=A	major_cov=11/19	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=11/19	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=11/19
RA	294	.	NC_000913	2756976	0	G	A	consensus_score=99.2	frequency=1	major_base=A	major_cov=14/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=14/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=14/13
RA	295	.	NC_000913	2780060	0	G	A	bias_e_value=4639800	bias_p_value=0.999601	consensus_score=112.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.971882	major_base=A	major_cov=18/15	major_frequency=9.706e-01	minor_base=G	minor_cov=1/0	new_cov=18/15	polymorphism_frequency=9.706e-01	polymorphism_score=-4.7	prediction=consensus	ref_cov=1/0	total_cov=19/15
RA	296	.	NC_000913	2792209	0	G	A	bias_e_value=3349910	bias_p_value=0.721707	consensus_score=229.4	fisher_strand_p_value=0.354839	frequency=1	ks_quality_p_value=0.997887	major_base=A	major_cov=21/40	major_frequency=9.839e-01	minor_base=C	minor_cov=1/0	new_cov=21/40	polymorphism_frequency=9.839e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/40
RA	297	.	NC_000913	2800435	0	G	A	consensus_score=64.3	frequency=1	major_base=A	major_cov=6/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=6/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/13
RA	298	.	NC_000913	2810925	0	G	A	consensus_score=92.7	frequency=1	major_base=A	major_cov=12/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=12/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=12/13
RA	299	.	NC_000913	2817850	0	G	A	bias_e_value=3687500	bias_p_value=0.794438	consensus_score=93.3	fisher_strand_p_value=0.431818	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=7/24	major_frequency=9.394e-01	minor_base=G	minor_cov=1/1	new_cov=7/24	polymorphism_frequency=9.394e-01	polymorphism_score=-6.2	prediction=consensus	ref_cov=1/1	total_cov=8/25
RA	300	.	NC_000913	2823288	0	C	T	consensus_score=163.9	frequency=1	major_base=T	major_cov=22/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=22/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/22
RA	301	.	NC_000913	2863773	0	C	T	consensus_score=174.3	frequency=1	major_base=T	major_cov=29/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/23
RA	302	.	NC_000913	2878077	0	C	T	consensus_score=72.8	frequency=1	major_base=T	major_cov=10/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=10/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=10/12
RA	303	.	NC_000913	2889365	0	C	T	bias_e_value=4033720	bias_p_value=0.869026	consensus_score=132.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.534026	major_base=T	major_cov=14/23	major_frequency=9.737e-01	minor_base=.	minor_cov=0/1	new_cov=14/23	polymorphism_frequency=9.737e-01	polymorphism_score=-2.6	prediction=consensus	ref_cov=0/0	total_cov=14/24
RA	304	.	NC_000913	2905825	0	C	T	consensus_score=61.1	frequency=1	major_base=T	major_cov=8/10	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=8/10	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=8/10
RA	305	.	NC_000913	2926292	0	C	T	consensus_score=79.2	frequency=1	major_base=T	major_cov=12/11	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=12/11	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=12/11
RA	306	.	NC_000913	2930047	0	G	T	bias_e_value=13978.9	bias_p_value=0.00301163	consensus_reject=FREQUENCY_CUTOFF	consensus_score=79.4	fisher_strand_p_value=0.00036367	frequency=2.609e-01	ks_quality_p_value=0.919848	major_base=G	major_cov=14/20	major_frequency=7.391e-01	minor_base=T	minor_cov=12/0	new_cov=12/0	polymorphism_frequency=2.609e-01	polymorphism_score=11.9	prediction=polymorphism	ref_cov=14/20	total_cov=26/20
RA	307	.	NC_000913	3028546	0	G	A	consensus_score=96.4	frequency=1	major_base=A	major_cov=20/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/12
RA	308	.	NC_000913	3050472	0	G	A	bias_e_value=4640470	bias_p_value=0.999745	consensus_score=134.8	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.977497	major_base=A	major_cov=14/23	major_frequency=9.737e-01	minor_base=G	minor_cov=0/1	new_cov=14/23	polymorphism_frequency=9.737e-01	polymorphism_score=-3.9	prediction=consensus	ref_cov=0/1	total_cov=14/24
RA	309	.	NC_000913	3061916	0	C	T	bias_e_value=3499610	bias_p_value=0.753958	consensus_score=159.1	fisher_strand_p_value=0.408163	frequency=1	ks_quality_p_value=0.947033	major_base=T	major_cov=29/19	major_frequency=9.796e-01	minor_base=G	minor_cov=0/1	new_cov=29/19	polymorphism_frequency=9.796e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/20
RA	310	.	NC_000913	3065449	0	G	A	bias_e_value=4640470	bias_p_value=0.999745	consensus_score=120.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.977497	major_base=A	major_cov=21/16	major_frequency=9.737e-01	minor_base=C	minor_cov=1/0	new_cov=21/16	polymorphism_frequency=9.737e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/16
RA	311	.	NC_000913	3065861	0	G	A	consensus_score=108.1	frequency=1	major_base=A	major_cov=16/15	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/15	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/15
RA	312	.	NC_000913	3089260	0	T	C	consensus_score=139.2	frequency=1	major_base=C	major_cov=20/18	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/18	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/18
RA	313	.	NC_000913	3090968	0	G	A	consensus_score=89.0	frequency=1	major_base=A	major_cov=10/15	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=10/15	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=10/15
RA	314	.	NC_000913	3336411	0	G	A	consensus_score=90.4	frequency=1	major_base=A	major_cov=7/18	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=7/18	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=7/18
RA	315	.	NC_000913	3336412	0	A	T	consensus_score=89.8	frequency=1	major_base=T	major_cov=7/18	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=7/18	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=7/18
RA	316	.	NC_000913	3355442	0	G	A	bias_e_value=3.74572	bias_p_value=8.0698e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=84.7	fisher_strand_p_value=4.57821e-08	frequency=3.091e-01	ks_quality_p_value=0.983864	major_base=G	major_cov=29/9	major_frequency=6.909e-01	minor_base=A	minor_cov=0/17	new_cov=0/17	polymorphism_frequency=3.091e-01	polymorphism_score=22.6	prediction=polymorphism	ref_cov=29/9	total_cov=29/26
RA	317	.	NC_000913	3367944	0	G	A	consensus_score=105.9	frequency=1	major_base=A	major_cov=15/15	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=15/15	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/15
RA	318	.	NC_000913	3388041	0	T	G	consensus_score=129.4	frequency=1	major_base=G	major_cov=20/18	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/18	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/18
RA	319	.	NC_000913	3399929	0	A	T	bias_e_value=3853940	bias_p_value=0.830296	consensus_score=161.3	fisher_strand_p_value=0.477273	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=23/20	major_frequency=9.773e-01	minor_base=G	minor_cov=0/1	new_cov=23/20	polymorphism_frequency=9.773e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/21
RA	320	.	NC_000913	3436697	0	G	A	bias_e_value=4641640	bias_p_value=0.999998	consensus_score=104.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.997986	major_base=A	major_cov=14/17	major_frequency=9.688e-01	minor_base=G	minor_cov=0/1	new_cov=14/17	polymorphism_frequency=9.688e-01	polymorphism_score=-7.0	prediction=consensus	ref_cov=0/1	total_cov=15/18
RA	321	.	NC_000913	3449779	0	G	A	bias_e_value=4641650	bias_p_value=1	consensus_score=107.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=13/19	major_frequency=9.697e-01	minor_base=C	minor_cov=0/1	new_cov=13/19	polymorphism_frequency=9.697e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=13/21
RA	322	.	NC_000913	3468768	0	C	T	consensus_score=105.2	frequency=1	major_base=T	major_cov=15/17	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=15/17	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/17
RA	323	.	NC_000913	3474425	0	T	C	consensus_score=131.3	frequency=1	major_base=C	major_cov=13/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=13/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=13/22
RA	324	.	NC_000913	3543877	0	G	A	consensus_score=97.7	frequency=1	major_base=A	major_cov=11/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=11/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=11/16
RA	325	.	NC_000913	3560455	1	.	G	consensus_score=136.7	frequency=1	major_base=G	major_cov=12/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=12/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=12/25
RA	326	.	NC_000913	3629921	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=168.8	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.999114	major_base=T	major_cov=22/25	major_frequency=9.792e-01	minor_base=G	minor_cov=0/1	new_cov=22/25	polymorphism_frequency=9.792e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/26
RA	327	.	NC_000913	3682515	0	C	T	consensus_score=156.4	frequency=1	major_base=T	major_cov=24/19	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/19	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/19
RA	328	.	NC_000913	3696909	0	G	A	bias_e_value=4641620	bias_p_value=0.999993	consensus_score=78.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.996383	major_base=A	major_cov=13/10	major_frequency=9.583e-01	minor_base=C	minor_cov=1/0	new_cov=13/10	polymorphism_frequency=9.583e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=14/10
RA	329	.	NC_000913	3707947	0	C	A	consensus_score=97.6	frequency=1	major_base=A	major_cov=16/11	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/11	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/11
RA	330	.	NC_000913	3725176	0	T	G	bias_e_value=4641650	bias_p_value=0.999999	consensus_score=149.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.998943	major_base=G	major_cov=18/25	major_frequency=9.773e-01	minor_base=T	minor_cov=0/1	new_cov=18/25	polymorphism_frequency=9.773e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=18/26
RA	331	.	NC_000913	3761230	0	G	A	bias_e_value=3899870	bias_p_value=0.840189	consensus_score=195.4	fisher_strand_p_value=0.490909	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=26/28	major_frequency=9.818e-01	minor_base=C	minor_cov=1/0	new_cov=26/28	polymorphism_frequency=9.818e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/28
RA	332	.	NC_000913	3771979	0	G	T	consensus_score=108.0	frequency=1	major_base=T	major_cov=14/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=14/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=14/16
RA	333	.	NC_000913	3815883	1	.	C	consensus_score=97.9	frequency=1	major_base=C	major_cov=21/8	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/8	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/8
RA	334	.	NC_000913	3823162	0	C	T	consensus_score=228.4	frequency=1	major_base=T	major_cov=33/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/29
RA	335	.	NC_000913	3869637	0	C	A	consensus_score=168.0	frequency=1	major_base=A	major_cov=28/18	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/18	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/18
RA	336	.	NC_000913	3878536	0	G	A	consensus_score=209.4	frequency=1	major_base=A	major_cov=26/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/32
RA	337	.	NC_000913	3883678	0	G	A	consensus_score=143.0	frequency=1	major_base=A	major_cov=19/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/21
RA	338	.	NC_000913	3912074	0	G	A	consensus_score=132.1	frequency=1	major_base=A	major_cov=23/14	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=23/14	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/14
RA	339	.	NC_000913	3931069	0	C	T	bias_e_value=3830780	bias_p_value=0.825304	consensus_score=54.0	fisher_strand_p_value=0.470588	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=9/7	major_frequency=9.412e-01	minor_base=G	minor_cov=0/1	new_cov=9/7	polymorphism_frequency=9.412e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=9/8
RA	340	.	NC_000913	3955304	0	C	T	bias_e_value=3787150	bias_p_value=0.815906	consensus_score=171.8	fisher_strand_p_value=0.458333	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=21/26	major_frequency=9.792e-01	minor_base=G	minor_cov=1/0	new_cov=21/26	polymorphism_frequency=9.792e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/26
RA	341	.	NC_000913	3988115	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=197.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=26/27	major_frequency=9.815e-01	minor_base=G	minor_cov=0/1	new_cov=26/27	polymorphism_frequency=9.815e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/28
RA	342	.	NC_000913	3993531	0	T	C	consensus_score=133.8	frequency=1	major_base=C	major_cov=15/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=15/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/21
RA	343	.	NC_000913	3996049	0	T	A	bias_e_value=3844650	bias_p_value=0.828294	consensus_score=196.2	fisher_strand_p_value=0.474576	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=31/27	major_frequency=9.831e-01	minor_base=G	minor_cov=0/1	new_cov=31/27	polymorphism_frequency=9.831e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/28
RA	344	.	NC_000913	4011802	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=151.5	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=25/18	major_frequency=9.773e-01	minor_base=G	minor_cov=1/0	new_cov=25/18	polymorphism_frequency=9.773e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/18
RA	345	.	NC_000913	4084903	0	T	G	consensus_score=150.0	frequency=1	major_base=G	major_cov=19/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/21
RA	346	.	NC_000913	4092703	0	A	G	consensus_score=74.0	frequency=1	major_base=G	major_cov=7/14	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=7/14	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=7/14
RA	347	.	NC_000913	4210041	0	G	A	consensus_score=70.1	frequency=1	major_base=A	major_cov=19/18	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/18	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/18
RA	348	.	NC_000913	4272878	0	C	G	consensus_score=140.5	frequency=1	major_base=G	major_cov=19/19	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/19	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/19
RA	349	.	NC_000913	4276716	0	G	T	consensus_score=79.3	frequency=1	major_base=T	major_cov=13/9	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=13/9	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=13/9
RA	350	.	NC_000913	4296380	1	.	C	consensus_score=74.8	frequency=1	major_base=C	major_cov=6/17	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=6/17	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/17
RA	351	.	NC_000913	4296380	2	.	G	consensus_score=70.3	frequency=1	major_base=G	major_cov=6/17	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=6/17	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/17
RA	352	.	NC_000913	4337390	0	C	T	consensus_score=123.6	frequency=1	major_base=T	major_cov=16/19	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/19	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/19
RA	353	.	NC_000913	4338916	0	C	T	bias_e_value=4641650	bias_p_value=0.999999	consensus_score=129.5	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.998414	major_base=T	major_cov=17/18	major_frequency=9.722e-01	minor_base=G	minor_cov=0/1	new_cov=17/18	polymorphism_frequency=9.722e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/19
RA	354	.	NC_000913	4349993	0	C	T	consensus_score=154.4	frequency=1	major_base=T	major_cov=22/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=22/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/23
RA	355	.	NC_000913	4375354	0	G	A	consensus_score=97.4	frequency=1	major_base=A	major_cov=11/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=11/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=11/16
RA	356	.	NC_000913	4380367	0	C	T	consensus_score=182.0	frequency=1	major_base=T	major_cov=25/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/27
RA	357	.	NC_000913	4425688	0	C	A	consensus_score=143.3	frequency=1	major_base=A	major_cov=20/20	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/20	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/20
RA	358	.	NC_000913	4425696	0	C	A	consensus_score=141.6	frequency=1	major_base=A	major_cov=20/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/22
RA	359	.	NC_000913	4436956	0	C	T	consensus_score=169.3	frequency=1	major_base=T	major_cov=28/17	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/17	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/17
RA	360	.	NC_000913	4436957	0	C	T	consensus_score=166.1	frequency=1	major_base=T	major_cov=28/17	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/17	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/17
RA	361	.	NC_000913	4532409	0	T	G	consensus_score=152.4	frequency=1	major_base=G	major_cov=27/15	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/15	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/15
MC	362	.	NC_000913	62379	88274	0	0	left_inside_cov=0	left_outside_cov=47	right_inside_cov=0	right_outside_cov=47
MC	363	.	NC_000913	257908	258683	767	0	left_inside_cov=0	left_outside_cov=59	right_inside_cov=1	right_outside_cov=60
MC	364	.	NC_000913	366181	366273	0	0	left_inside_cov=0	left_outside_cov=85	right_inside_cov=0	right_outside_cov=84
MC	365	.	NC_000913	1196352	1211412	0	0	left_inside_cov=3	left_outside_cov=5	right_inside_cov=0	right_outside_cov=4
MC	366	.	NC_000913	1588756	1589725	0	0	left_inside_cov=0	left_outside_cov=18	right_inside_cov=0	right_outside_cov=18
MC	367	.	NC_000913	1704350	1704739	0	0	left_inside_cov=0	left_outside_cov=28	right_inside_cov=0	right_outside_cov=27
MC	368	.	NC_000913	1978495	1979270	0	767	left_inside_cov=0	left_outside_cov=25	right_inside_cov=1	right_outside_cov=21
MC	369	.	NC_000913	2238416	2238434	0	0	left_inside_cov=0	left_outside_cov=30	right_inside_cov=0	right_outside_cov=30
MC	370	.	NC_000913	2942765	2942772	0	0	left_inside_cov=0	left_outside_cov=18	right_inside_cov=0	right_outside_cov=18
MC	371	.	NC_000913	3423895	3424410	515	0	left_inside_cov=3	left_outside_cov=4	right_inside_cov=2	right_outside_cov=4
MC	372	.	NC_000913	3708445	3708539	0	0	left_inside_cov=3	left_outside_cov=4	right_inside_cov=3	right_outside_cov=4
MC	373	.	NC_000913	3762493	3765052	1581	972	left_inside_cov=3	left_outside_cov=4	right_inside_cov=3	right_outside_cov=4
MC	374	.	NC_000913	4540754	4597436	0	0	left_inside_cov=3	left_outside_cov=4	right_inside_cov=3	right_outside_cov=4
JC	375	.	NC_000913	1	1	NC_000913	4641652	-1	0	alignment_overlap=0	coverage_minus=14	coverage_plus=9	flanking_left=251	flanking_right=251	frequency=1	ignore=CIRCULAR_CHROMOSOME	junction_possible_overlap_registers=244	key=NC_000913__1__1__NC_000913__4641652__-1__0____251__251__0__0	max_left=244	max_left_minus=228	max_left_plus=244	max_min_left=124	max_min_left_minus=124	max_min_left_plus=107	max_min_right=109	max_min_right_minus=109	max_min_right_plus=93	max_pos_hash_score=490	max_right=243	max_right_minus=222	max_right_plus=243	neg_log10_pos_hash_p_value=0.6	new_junction_coverage=0.69	new_junction_read_count=24	polymorphism_frequency=1.000e+00	pos_hash_score=22	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=244	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=244	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=23
JC	376	.	NC_000913	62378	-1	NC_000913	88275	1	0	alignment_overlap=0	coverage_minus=21	coverage_plus=26	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=244	key=NC_000913__62378__-1__NC_000913__88275__1__0____251__251__0__0	max_left=246	max_left_minus=242	max_left_plus=246	max_min_left=120	max_min_left_minus=120	max_min_left_plus=103	max_min_right=125	max_min_right_minus=125	max_min_right_plus=125	max_pos_hash_score=490	max_right=242	max_right_minus=242	max_right_plus=239	neg_log10_pos_hash_p_value=0.0	new_junction_coverage=1.35	new_junction_read_count=47	polymorphism_frequency=1.000e+00	pos_hash_score=45	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=244	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=244	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=47
JC	377	.	NC_000913	257907	-1	NC_000913	258684	1	0	alignment_overlap=8	coverage_minus=38	coverage_plus=20	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=236	key=NC_000913__257907__-1__NC_000913__258676__1__8____251__251__0__0	max_left=242	max_left_minus=225	max_left_plus=242	max_min_left=121	max_min_left_minus=121	max_min_left_plus=119	max_min_right=121	max_min_right_minus=121	max_min_right_plus=76	max_pos_hash_score=474	max_right=241	max_right_minus=241	max_right_plus=241	neg_log10_pos_hash_p_value=0.0	new_junction_coverage=1.75	new_junction_read_count=59	polymorphism_frequency=1.000e+00	pos_hash_score=53	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=8	side_1_possible_overlap_registers=244	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=236	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=58
JC	378	.	NC_000913	258675	-1	NC_000913	1301058	-1	0	alignment_overlap=0	coverage_minus=11	coverage_plus=8	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=244	key=NC_000913__258675__-1__NC_000913__1301058__-1__0____251__251__1__0	max_left=241	max_left_minus=240	max_left_plus=241	max_min_left=124	max_min_left_minus=124	max_min_left_plus=77	max_min_right=117	max_min_right_minus=106	max_min_right_plus=117	max_pos_hash_score=490	max_right=226	max_right_minus=226	max_right_plus=201	neg_log10_pos_hash_p_value=0.8	new_junction_coverage=0.55	new_junction_read_count=19	polymorphism_frequency=9.015e-01	pos_hash_score=18	prediction=consensus	read_count_offset=9	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.06	side_2_overlap=0	side_2_possible_overlap_registers=235	side_2_read_count=2	side_2_redundant=0	total_non_overlap_reads=19
JC	379	.	NC_000913	288695	1	NC_000913	3722075	-1	0	alignment_overlap=0	coverage_minus=13	coverage_plus=22	flanking_left=251	flanking_right=251	frequency=3.217e-01	junction_possible_overlap_registers=244	key=NC_000913__288695__1__NC_000913__3722075__-1__0____251__251__0__0	max_left=248	max_left_minus=238	max_left_plus=248	max_min_left=121	max_min_left_minus=102	max_min_left_plus=121	max_min_right=118	max_min_right_minus=90	max_min_right_plus=118	max_pos_hash_score=490	max_right=243	max_right_minus=243	max_right_plus=237	neg_log10_pos_hash_p_value=0.2	new_junction_coverage=1.06	new_junction_read_count=37	polymorphism_frequency=3.217e-01	pos_hash_score=35	prediction=polymorphism	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=2.24	side_1_overlap=0	side_1_possible_overlap_registers=244	side_1_read_count=78	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=0	total_non_overlap_reads=35
JC	380	.	NC_000913	288697	-1	NC_000913	3720633	1	0	alignment_overlap=0	coverage_minus=14	coverage_plus=39	flanking_left=251	flanking_right=251	frequency=4.206e-01	junction_possible_overlap_registers=244	key=NC_000913__288697__-1__NC_000913__3720633__1__0____251__251__0__0	max_left=248	max_left_minus=248	max_left_plus=247	max_min_left=123	max_min_left_minus=123	max_min_left_plus=121	max_min_right=122	max_min_right_minus=122	max_min_right_plus=118	max_pos_hash_score=490	max_right=250	max_right_minus=250	max_right_plus=248	neg_log10_pos_hash_p_value=0.0	new_junction_coverage=1.52	new_junction_read_count=53	polymorphism_frequency=4.206e-01	pos_hash_score=50	prediction=polymorphism	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=2.10	side_1_overlap=0	side_1_possible_overlap_registers=244	side_1_read_count=73	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=0	total_non_overlap_reads=53
JC	381	.	NC_000913	339198	-1	NC_000913	375418	1	0	alignment_overlap=4	coverage_minus=23	coverage_plus=20	flanking_left=251	flanking_right=251	frequency=4.123e-01	junction_possible_overlap_registers=240	key=NC_000913__339198__-1__NC_000913__375414__1__4____251__251__0__0	max_left=234	max_left_minus=233	max_left_plus=234	max_min_left=114	max_min_left_minus=106	max_min_left_plus=114	max_min_right=118	max_min_right_minus=118	max_min_right_plus=115	max_pos_hash_score=482	max_right=236	max_right_minus=217	max_right_plus=236	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.26	new_junction_read_count=43	polymorphism_frequency=4.123e-01	pos_hash_score=41	prediction=polymorphism	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=2.44	side_1_overlap=4	side_1_possible_overlap_registers=244	side_1_read_count=85	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.14	side_2_overlap=0	side_2_possible_overlap_registers=240	side_2_read_count=39	side_2_redundant=0	total_non_overlap_reads=43
JC	382	.	NC_000913	366180	-1	NC_000913	366274	1	0	alignment_overlap=0	coverage_minus=44	coverage_plus=38	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=244	key=NC_000913__366180__-1__NC_000913__366274__1__0____251__251__0__0	max_left=249	max_left_minus=249	max_left_plus=241	max_min_left=122	max_min_left_minus=122	max_min_left_plus=122	max_min_right=120	max_min_right_minus=120	max_min_right_plus=119	max_pos_hash_score=490	max_right=245	max_right_minus=244	max_right_plus=245	neg_log10_pos_hash_p_value=0.0	new_junction_coverage=2.41	new_junction_read_count=84	polymorphism_frequency=1.000e+00	pos_hash_score=76	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=244	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=244	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=82
JC	383	.	NC_000913	381260	1	NC_000913	789812	1	0	alignment_overlap=0	coverage_minus=19	coverage_plus=18	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=244	key=NC_000913__381260__1__NC_000913__789812__1__0____251__251__1__0	max_left=232	max_left_minus=221	max_left_plus=232	max_min_left=117	max_min_left_minus=117	max_min_left_plus=105	max_min_right=125	max_min_right_minus=125	max_min_right_plus=104	max_pos_hash_score=490	max_right=234	max_right_minus=234	max_right_plus=219	neg_log10_pos_hash_p_value=0.2	new_junction_coverage=1.15	new_junction_read_count=40	polymorphism_frequency=1.000e+00	pos_hash_score=33	prediction=consensus	read_count_offset=5	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=239	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=37
JC	384	.	NC_000913	381260	1	NC_000913	1093485	-1	0	alignment_overlap=2	coverage_minus=9	coverage_plus=18	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=242	key=NC_000913__381260__1__NC_000913__1093487__-1__2____251__251__1__0	max_left=243	max_left_minus=234	max_left_plus=243	max_min_left=124	max_min_left_minus=122	max_min_left_plus=124	max_min_right=122	max_min_right_minus=121	max_min_right_plus=122	max_pos_hash_score=486	max_right=235	max_right_minus=213	max_right_plus=235	neg_log10_pos_hash_p_value=0.4	new_junction_coverage=0.81	new_junction_read_count=28	polymorphism_frequency=1.000e+00	pos_hash_score=26	prediction=consensus	read_count_offset=5	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=2	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=237	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=27
JC	385	.	NC_000913	382590	-1	NC_000913	789816	-1	0	alignment_overlap=2	coverage_minus=23	coverage_plus=29	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=242	key=NC_000913__382590__-1__NC_000913__789818__-1__2____251__251__1__0	max_left=244	max_left_minus=244	max_left_plus=237	max_min_left=123	max_min_left_minus=123	max_min_left_plus=120	max_min_right=117	max_min_right_minus=117	max_min_right_plus=112	max_pos_hash_score=486	max_right=248	max_right_minus=236	max_right_plus=248	neg_log10_pos_hash_p_value=0.0	new_junction_coverage=1.53	new_junction_read_count=53	polymorphism_frequency=1.000e+00	pos_hash_score=51	prediction=consensus	read_count_offset=5	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=2	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=237	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=52
JC	386	.	NC_000913	607765	1	NC_000913	3722075	-1	0	alignment_overlap=1	coverage_minus=3	coverage_plus=3	flanking_left=251	flanking_right=251	frequency=2.000e-01	junction_possible_overlap_registers=243	key=NC_000913__607764__1__NC_000913__3722075__-1__1____251__251__0__0	max_left=243	max_left_minus=108	max_left_plus=243	max_min_left=108	max_min_left_minus=108	max_min_left_plus=0	max_min_right=78	max_min_right_minus=0	max_min_right_plus=78	max_pos_hash_score=488	max_right=186	max_right_minus=186	max_right_plus=78	neg_log10_pos_hash_p_value=2.4	new_junction_coverage=0.17	new_junction_read_count=6	polymorphism_frequency=2.000e-01	pos_hash_score=6	prediction=polymorphism	reject=FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.69	side_1_overlap=0	side_1_possible_overlap_registers=243	side_1_read_count=24	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=1	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=0	total_non_overlap_reads=6
JC	387	.	NC_000913	607767	-1	NC_000913	3720633	1	0	alignment_overlap=2	coverage_minus=0	coverage_plus=4	flanking_left=251	flanking_right=251	frequency=1.481e-01	junction_possible_overlap_registers=242	key=NC_000913__607769__-1__NC_000913__3720633__1__2____251__251__0__0	max_left=240	max_left_minus=0	max_left_plus=240	max_min_left=56	max_min_left_minus=0	max_min_left_plus=56	max_min_right=93	max_min_right_minus=0	max_min_right_plus=93	max_pos_hash_score=486	max_right=193	max_right_minus=0	max_right_plus=193	neg_log10_pos_hash_p_value=3.0	new_junction_coverage=0.12	new_junction_read_count=4	polymorphism_frequency=1.481e-01	pos_hash_score=4	prediction=polymorphism	reject=FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.67	side_1_overlap=0	side_1_possible_overlap_registers=242	side_1_read_count=23	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=2	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=0	total_non_overlap_reads=4
JC	388	.	NC_000913	1093481	1	NC_000913	1651548	-1	0	alignment_overlap=0	coverage_minus=15	coverage_plus=5	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=244	key=NC_000913__1093481__1__NC_000913__1651548__-1__0____251__251__0__1	max_left=244	max_left_minus=222	max_left_plus=244	max_min_left=125	max_min_left_minus=125	max_min_left_plus=79	max_min_right=124	max_min_right_minus=124	max_min_right_plus=123	max_pos_hash_score=490	max_right=242	max_right_minus=242	max_right_plus=201	neg_log10_pos_hash_p_value=0.7	new_junction_coverage=0.57	new_junction_read_count=20	polymorphism_frequency=9.514e-01	pos_hash_score=20	prediction=consensus	read_count_offset=5	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.03	side_1_overlap=0	side_1_possible_overlap_registers=239	side_1_read_count=1	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=20
JC	389	.	NC_000913	1299498	-1	NC_000913	1300698	1	0	alignment_overlap=4	coverage_minus=15	coverage_plus=12	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=240	key=NC_000913__1299498__-1__NC_000913__1300694__1__4____251__251__0__0	max_left=235	max_left_minus=235	max_left_plus=231	max_min_left=88	max_min_left_minus=71	max_min_left_plus=88	max_min_right=108	max_min_right_minus=108	max_min_right_plus=84	max_pos_hash_score=482	max_right=244	max_right_minus=224	max_right_plus=244	neg_log10_pos_hash_p_value=0.4	new_junction_coverage=0.79	new_junction_read_count=27	polymorphism_frequency=1.000e+00	pos_hash_score=26	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=4	side_1_possible_overlap_registers=244	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=240	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=27
JC	390	.	NC_000913	1301050	1	NC_000913	1978503	1	0	alignment_overlap=0	coverage_minus=14	coverage_plus=9	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=244	key=NC_000913__1301050__1__NC_000913__1978503__1__0____251__251__0__1	max_left=250	max_left_minus=250	max_left_plus=242	max_min_left=118	max_min_left_minus=118	max_min_left_plus=111	max_min_right=123	max_min_right_minus=123	max_min_right_plus=41	max_pos_hash_score=490	max_right=246	max_right_minus=246	max_right_plus=228	neg_log10_pos_hash_p_value=0.5	new_junction_coverage=0.72	new_junction_read_count=25	polymorphism_frequency=9.233e-01	pos_hash_score=23	prediction=consensus	read_count_offset=9	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.06	side_1_overlap=0	side_1_possible_overlap_registers=235	side_1_read_count=2	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=23
JC	391	.	NC_000913	1396044	1	NC_000913	1434346	-1	0	alignment_overlap=0	coverage_minus=7	coverage_plus=16	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=244	key=NC_000913__1396044__1__NC_000913__1434346__-1__0____251__251__1__0	max_left=234	max_left_minus=234	max_left_plus=231	max_min_left=111	max_min_left_minus=90	max_min_left_plus=111	max_min_right=106	max_min_right_minus=106	max_min_right_plus=105	max_pos_hash_score=490	max_right=244	max_right_minus=222	max_right_plus=244	neg_log10_pos_hash_p_value=0.5	new_junction_coverage=0.66	new_junction_read_count=23	polymorphism_frequency=1.000e+00	pos_hash_score=23	prediction=consensus	read_count_offset=4	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=240	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=23
JC	392	.	NC_000913	1397238	-1	NC_000913	1434343	1	0	alignment_overlap=0	coverage_minus=8	coverage_plus=6	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=244	key=NC_000913__1397238__-1__NC_000913__1434343__1__0____251__251__1__0	max_left=237	max_left_minus=222	max_left_plus=237	max_min_left=90	max_min_left_minus=90	max_min_left_plus=74	max_min_right=118	max_min_right_minus=118	max_min_right_plus=83	max_pos_hash_score=490	max_right=242	max_right_minus=242	max_right_plus=230	neg_log10_pos_hash_p_value=1.2	new_junction_coverage=0.46	new_junction_read_count=16	polymorphism_frequency=1.000e+00	pos_hash_score=14	prediction=consensus	read_count_offset=4	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=240	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=14
JC	393	.	NC_000913	1397238	-1	NC_000913	1978494	-1	0	alignment_overlap=0	coverage_minus=6	coverage_plus=19	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=244	key=NC_000913__1397238__-1__NC_000913__1978494__-1__0____251__251__1__0	max_left=240	max_left_minus=232	max_left_plus=240	max_min_left=109	max_min_left_minus=109	max_min_left_plus=97	max_min_right=112	max_min_right_minus=81	max_min_right_plus=112	max_pos_hash_score=490	max_right=249	max_right_minus=203	max_right_plus=249	neg_log10_pos_hash_p_value=0.5	new_junction_coverage=0.72	new_junction_read_count=25	polymorphism_frequency=1.000e+00	pos_hash_score=23	prediction=consensus	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=244	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=25
JC	394	.	NC_000913	1469240	-1	NC_000913	1495019	-1	0	alignment_overlap=2	coverage_minus=4	coverage_plus=1	flanking_left=251	flanking_right=251	frequency=2.174e-01	junction_possible_overlap_registers=242	key=NC_000913__1469240__-1__NC_000913__1495021__-1__2____251__251__1__0	max_left=236	max_left_minus=236	max_left_plus=66	max_min_left=66	max_min_left_minus=38	max_min_left_plus=66	max_min_right=90	max_min_right_minus=90	max_min_right_plus=0	max_pos_hash_score=486	max_right=235	max_right_minus=235	max_right_plus=183	neg_log10_pos_hash_p_value=2.7	new_junction_coverage=0.14	new_junction_read_count=5	polymorphism_frequency=2.174e-01	pos_hash_score=5	prediction=polymorphism	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=2	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.52	side_2_overlap=0	side_2_possible_overlap_registers=242	side_2_read_count=18	side_2_redundant=0	total_non_overlap_reads=5
JC	395	.	NC_000913	1588755	-1	NC_000913	1589726	1	0	alignment_overlap=0	coverage_minus=9	coverage_plus=9	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=244	key=NC_000913__1588755__-1__NC_000913__1589726__1__0____251__251__0__0	max_left=240	max_left_minus=240	max_left_plus=218	max_min_left=125	max_min_left_minus=107	max_min_left_plus=125	max_min_right=117	max_min_right_minus=117	max_min_right_plus=33	max_pos_hash_score=490	max_right=234	max_right_minus=197	max_right_plus=234	neg_log10_pos_hash_p_value=1.0	new_junction_coverage=0.52	new_junction_read_count=18	polymorphism_frequency=1.000e+00	pos_hash_score=16	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=244	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=244	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=18
JC	396	.	NC_000913	1651548	-1	NC_000913	1651855	-1	0	alignment_overlap=0	coverage_minus=8	coverage_plus=24	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=244	key=NC_000913__1651548__-1__NC_000913__1651855__-1__0____251__251__1__0	max_left=230	max_left_minus=216	max_left_plus=230	max_min_left=116	max_min_left_minus=70	max_min_left_plus=116	max_min_right=125	max_min_right_minus=60	max_min_right_plus=125	max_pos_hash_score=490	max_right=218	max_right_minus=218	max_right_plus=157	neg_log10_pos_hash_p_value=0.2	new_junction_coverage=0.95	new_junction_read_count=33	polymorphism_frequency=1.000e+00	pos_hash_score=31	prediction=consensus	read_count_offset=5	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=239	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=32
JC	397	.	NC_000913	1651851	1	NC_000913	2070271	-1	0	alignment_overlap=0	coverage_minus=8	coverage_plus=14	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=244	key=NC_000913__1651851__1__NC_000913__2070271__-1__0____251__251__0__1	max_left=232	max_left_minus=232	max_left_plus=200	max_min_left=121	max_min_left_minus=121	max_min_left_plus=114	max_min_right=117	max_min_right_minus=89	max_min_right_plus=117	max_pos_hash_score=490	max_right=225	max_right_minus=167	max_right_plus=225	neg_log10_pos_hash_p_value=0.6	new_junction_coverage=0.63	new_junction_read_count=22	polymorphism_frequency=1.000e+00	pos_hash_score=22	prediction=consensus	read_count_offset=5	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=239	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=22
JC	398	.	NC_000913	1704349	-1	NC_000913	1704740	1	0	alignment_overlap=2	coverage_minus=13	coverage_plus=14	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=242	key=NC_000913__1704349__-1__NC_000913__1704738__1__2____251__251__0__0	max_left=231	max_left_minus=230	max_left_plus=231	max_min_left=107	max_min_left_minus=107	max_min_left_plus=107	max_min_right=123	max_min_right_minus=64	max_min_right_plus=123	max_pos_hash_score=486	max_right=244	max_right_minus=244	max_right_plus=202	neg_log10_pos_hash_p_value=0.4	new_junction_coverage=0.78	new_junction_read_count=27	polymorphism_frequency=1.000e+00	pos_hash_score=27	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=2	side_1_possible_overlap_registers=244	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=242	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=27
JC	399	.	NC_000913	1977430	1	NC_000913	1977443	-1	0	alignment_overlap=8	coverage_minus=13	coverage_plus=6	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=236	key=NC_000913__1977430__1__NC_000913__1977451__-1__8____251__251__0__0	max_left=242	max_left_minus=242	max_left_plus=178	max_min_left=120	max_min_left_minus=120	max_min_left_plus=50	max_min_right=111	max_min_right_minus=111	max_min_right_plus=98	max_pos_hash_score=474	max_right=239	max_right_minus=239	max_right_plus=232	neg_log10_pos_hash_p_value=0.7	new_junction_coverage=0.56	new_junction_read_count=19	polymorphism_frequency=9.283e-01	pos_hash_score=19	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.06	side_1_overlap=8	side_1_possible_overlap_registers=244	side_1_read_count=2	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.03	side_2_overlap=0	side_2_possible_overlap_registers=236	side_2_read_count=1	side_2_redundant=0	total_non_overlap_reads=19
JC	400	.	NC_000913	1978503	1	NC_000913	4069379	1	0	alignment_overlap=0	coverage_minus=8	coverage_plus=13	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=244	key=NC_000913__1978503__1__NC_000913__4069379__1__0____251__251__1__0	max_left=246	max_left_minus=165	max_left_plus=246	max_min_left=116	max_min_left_minus=116	max_min_left_plus=36	max_min_right=114	max_min_right_minus=95	max_min_right_plus=114	max_pos_hash_score=490	max_right=241	max_right_minus=241	max_right_plus=238	neg_log10_pos_hash_p_value=0.6	new_junction_coverage=0.60	new_junction_read_count=21	polymorphism_frequency=1.000e+00	pos_hash_score=21	prediction=consensus	read_count_offset=9	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=235	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=21
JC	401	.	NC_000913	1979270	-1	NC_000913	2382515	-1	0	alignment_overlap=0	coverage_minus=18	coverage_plus=21	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=244	key=NC_000913__1979270__-1__NC_000913__2382515__-1__0____251__251__1__0	max_left=246	max_left_minus=236	max_left_plus=246	max_min_left=118	max_min_left_minus=107	max_min_left_plus=118	max_min_right=125	max_min_right_minus=125	max_min_right_plus=93	max_pos_hash_score=490	max_right=249	max_right_minus=249	max_right_plus=241	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.15	new_junction_read_count=40	polymorphism_frequency=1.000e+00	pos_hash_score=38	prediction=consensus	read_count_offset=9	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=235	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=39
JC	402	.	NC_000913	1979270	-1	NC_000913	4289456	-1	0	alignment_overlap=0	coverage_minus=15	coverage_plus=22	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=244	key=NC_000913__1979270__-1__NC_000913__4289456__-1__0____251__251__1__0	max_left=238	max_left_minus=227	max_left_plus=238	max_min_left=113	max_min_left_minus=110	max_min_left_plus=113	max_min_right=115	max_min_right_minus=113	max_min_right_plus=115	max_pos_hash_score=490	max_right=227	max_right_minus=227	max_right_plus=215	neg_log10_pos_hash_p_value=0.2	new_junction_coverage=1.09	new_junction_read_count=38	polymorphism_frequency=1.000e+00	pos_hash_score=34	prediction=consensus	read_count_offset=9	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=235	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=37
JC	403	.	NC_000913	1979271	1	NC_000913	2102947	-1	0	alignment_overlap=0	coverage_minus=13	coverage_plus=7	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=244	key=NC_000913__1979271__1__NC_000913__2102947__-1__0____251__251__0__1	max_left=225	max_left_minus=225	max_left_plus=132	max_min_left=112	max_min_left_minus=112	max_min_left_plus=82	max_min_right=119	max_min_right_minus=116	max_min_right_plus=119	max_pos_hash_score=490	max_right=224	max_right_minus=224	max_right_plus=208	neg_log10_pos_hash_p_value=0.7	new_junction_coverage=0.57	new_junction_read_count=20	polymorphism_frequency=9.524e-01	pos_hash_score=20	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.03	side_1_overlap=0	side_1_possible_overlap_registers=244	side_1_read_count=1	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=20
JC	404	.	NC_000913	2020326	1	NC_000913	3722075	-1	0	alignment_overlap=0	coverage_minus=3	coverage_plus=2	flanking_left=251	flanking_right=251	frequency=1.786e-01	junction_possible_overlap_registers=244	key=NC_000913__2020326__1__NC_000913__3722075__-1__0____251__251__0__0	max_left=234	max_left_minus=212	max_left_plus=234	max_min_left=103	max_min_left_minus=103	max_min_left_plus=0	max_min_right=69	max_min_right_minus=56	max_min_right_plus=69	max_pos_hash_score=490	max_right=148	max_right_minus=148	max_right_plus=69	neg_log10_pos_hash_p_value=2.7	new_junction_coverage=0.14	new_junction_read_count=5	polymorphism_frequency=1.786e-01	pos_hash_score=5	prediction=polymorphism	reject=FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.66	side_1_overlap=0	side_1_possible_overlap_registers=244	side_1_read_count=23	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=0	total_non_overlap_reads=5
JC	405	.	NC_000913	2238415	-1	NC_000913	2238435	1	0	alignment_overlap=0	coverage_minus=20	coverage_plus=9	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=244	key=NC_000913__2238415__-1__NC_000913__2238435__1__0____251__251__0__0	max_left=248	max_left_minus=248	max_left_plus=213	max_min_left=111	max_min_left_minus=111	max_min_left_plus=52	max_min_right=124	max_min_right_minus=124	max_min_right_plus=109	max_pos_hash_score=490	max_right=250	max_right_minus=232	max_right_plus=250	neg_log10_pos_hash_p_value=0.4	new_junction_coverage=0.86	new_junction_read_count=30	polymorphism_frequency=1.000e+00	pos_hash_score=25	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=244	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=244	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=29
JC	406	.	NC_000913	2382507	1	NC_000913	3584195	-1	0	alignment_overlap=0	coverage_minus=16	coverage_plus=9	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=244	key=NC_000913__2382507__1__NC_000913__3584195__-1__0____251__251__0__1	max_left=248	max_left_minus=232	max_left_plus=248	max_min_left=122	max_min_left_minus=122	max_min_left_plus=71	max_min_right=118	max_min_right_minus=118	max_min_right_plus=100	max_pos_hash_score=490	max_right=235	max_right_minus=235	max_right_plus=226	neg_log10_pos_hash_p_value=0.5	new_junction_coverage=0.72	new_junction_read_count=25	polymorphism_frequency=1.000e+00	pos_hash_score=23	prediction=consensus	read_count_offset=9	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=235	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=25
JC	407	.	NC_000913	2805802	1	NC_000913	3584195	-1	0	alignment_overlap=0	coverage_minus=22	coverage_plus=22	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=244	key=NC_000913__2805802__1__NC_000913__3584195__-1__0____251__251__0__1	max_left=243	max_left_minus=240	max_left_plus=243	max_min_left=112	max_min_left_minus=112	max_min_left_plus=110	max_min_right=120	max_min_right_minus=111	max_min_right_plus=120	max_pos_hash_score=490	max_right=246	max_right_minus=194	max_right_plus=246	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.32	new_junction_read_count=46	polymorphism_frequency=1.000e+00	pos_hash_score=44	prediction=consensus	read_count_offset=9	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=235	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=44
JC	408	.	NC_000913	2805810	-1	NC_000913	3583428	1	0	alignment_overlap=0	coverage_minus=15	coverage_plus=21	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=244	key=NC_000913__2805810__-1__NC_000913__3583428__1__0____251__251__0__1	max_left=238	max_left_minus=231	max_left_plus=238	max_min_left=125	max_min_left_minus=99	max_min_left_plus=125	max_min_right=121	max_min_right_minus=121	max_min_right_plus=117	max_pos_hash_score=490	max_right=248	max_right_minus=248	max_right_plus=248	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.09	new_junction_read_count=38	polymorphism_frequency=1.000e+00	pos_hash_score=36	prediction=consensus	read_count_offset=9	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=235	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=36
JC	409	.	NC_000913	2913392	1	NC_000913	2997691	-1	0	alignment_overlap=0	coverage_minus=21	coverage_plus=18	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=244	key=NC_000913__2913392__1__NC_000913__2997691__-1__0____251__251__0__1	max_left=236	max_left_minus=236	max_left_plus=229	max_min_left=119	max_min_left_minus=119	max_min_left_plus=68	max_min_right=118	max_min_right_minus=109	max_min_right_plus=118	max_pos_hash_score=490	max_right=244	max_right_minus=220	max_right_plus=244	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.21	new_junction_read_count=42	polymorphism_frequency=1.000e+00	pos_hash_score=36	prediction=consensus	read_count_offset=5	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=239	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=39
JC	410	.	NC_000913	2913396	-1	NC_000913	2996361	1	0	alignment_overlap=0	coverage_minus=22	coverage_plus=22	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=244	key=NC_000913__2913396__-1__NC_000913__2996361__1__0____251__251__0__1	max_left=246	max_left_minus=246	max_left_plus=236	max_min_left=113	max_min_left_minus=113	max_min_left_plus=112	max_min_right=122	max_min_right_minus=122	max_min_right_plus=110	max_pos_hash_score=490	max_right=240	max_right_minus=215	max_right_plus=240	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.29	new_junction_read_count=45	polymorphism_frequency=1.000e+00	pos_hash_score=43	prediction=consensus	read_count_offset=5	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=239	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=44
JC	411	.	NC_000913	2942764	-1	NC_000913	2942773	1	0	alignment_overlap=6	coverage_minus=10	coverage_plus=7	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=238	key=NC_000913__2942764__-1__NC_000913__2942767__1__6____251__251__0__0	max_left=237	max_left_minus=237	max_left_plus=215	max_min_left=107	max_min_left_minus=107	max_min_left_plus=59	max_min_right=107	max_min_right_minus=67	max_min_right_plus=107	max_pos_hash_score=478	max_right=233	max_right_minus=233	max_right_plus=232	neg_log10_pos_hash_p_value=0.9	new_junction_coverage=0.53	new_junction_read_count=18	polymorphism_frequency=1.000e+00	pos_hash_score=17	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=6	side_1_possible_overlap_registers=244	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=238	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=17
JC	412	.	NC_000913	3078723	1	NC_000913	3131340	-1	0	alignment_overlap=0	coverage_minus=18	coverage_plus=12	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=244	key=NC_000913__3078723__1__NC_000913__3131340__-1__0____251__251__0__1	max_left=241	max_left_minus=241	max_left_plus=219	max_min_left=125	max_min_left_minus=125	max_min_left_plus=105	max_min_right=125	max_min_right_minus=125	max_min_right_plus=121	max_pos_hash_score=490	max_right=229	max_right_minus=229	max_right_plus=217	neg_log10_pos_hash_p_value=0.3	new_junction_coverage=0.86	new_junction_read_count=30	polymorphism_frequency=1.000e+00	pos_hash_score=29	prediction=consensus	read_count_offset=4	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=240	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=30
JC	413	.	NC_000913	3078726	-1	NC_000913	3130146	1	0	alignment_overlap=1	coverage_minus=16	coverage_plus=17	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=243	key=NC_000913__3078727__-1__NC_000913__3130146__1__1____251__251__0__1	max_left=249	max_left_minus=249	max_left_plus=235	max_min_left=118	max_min_left_minus=107	max_min_left_plus=118	max_min_right=125	max_min_right_minus=87	max_min_right_plus=125	max_pos_hash_score=488	max_right=239	max_right_minus=230	max_right_plus=239	neg_log10_pos_hash_p_value=0.2	new_junction_coverage=0.95	new_junction_read_count=33	polymorphism_frequency=1.000e+00	pos_hash_score=32	prediction=consensus	read_count_offset=4	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=239	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=1	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=33
JC	414	.	NC_000913	3583428	1	NC_000913	4069387	-1	0	alignment_overlap=0	coverage_minus=8	coverage_plus=17	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=244	key=NC_000913__3583428__1__NC_000913__4069387__-1__0____251__251__1__0	max_left=243	max_left_minus=242	max_left_plus=243	max_min_left=118	max_min_left_minus=17	max_min_left_plus=118	max_min_right=114	max_min_right_minus=102	max_min_right_plus=114	max_pos_hash_score=490	max_right=239	max_right_minus=239	max_right_plus=233	neg_log10_pos_hash_p_value=0.5	new_junction_coverage=0.72	new_junction_read_count=25	polymorphism_frequency=1.000e+00	pos_hash_score=24	prediction=consensus	read_count_offset=9	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=235	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=25
JC	415	.	NC_000913	3584195	-1	NC_000913	4086853	1	0	alignment_overlap=0	coverage_minus=1	coverage_plus=7	flanking_left=251	flanking_right=251	frequency=3.077e-01	junction_possible_overlap_registers=244	key=NC_000913__3584195__-1__NC_000913__4086853__1__0____251__251__1__0	max_left=240	max_left_minus=36	max_left_plus=240	max_min_left=36	max_min_left_minus=36	max_min_left_plus=36	max_min_right=104	max_min_right_minus=0	max_min_right_plus=104	max_pos_hash_score=490	max_right=125	max_right_minus=125	max_right_plus=125	neg_log10_pos_hash_p_value=2.0	new_junction_coverage=0.23	new_junction_read_count=8	polymorphism_frequency=3.077e-01	pos_hash_score=8	prediction=polymorphism	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.52	side_2_overlap=0	side_2_possible_overlap_registers=244	side_2_read_count=18	side_2_redundant=0	total_non_overlap_reads=8
JC	416	.	NC_000913	3584195	-1	NC_000913	4289448	1	0	alignment_overlap=0	coverage_minus=30	coverage_plus=18	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=244	key=NC_000913__3584195__-1__NC_000913__4289448__1__0____251__251__1__0	max_left=246	max_left_minus=246	max_left_plus=232	max_min_left=121	max_min_left_minus=119	max_min_left_plus=121	max_min_right=122	max_min_right_minus=122	max_min_right_plus=95	max_pos_hash_score=490	max_right=250	max_right_minus=250	max_right_plus=242	neg_log10_pos_hash_p_value=0.0	new_junction_coverage=1.41	new_junction_read_count=49	polymorphism_frequency=1.000e+00	pos_hash_score=46	prediction=consensus	read_count_offset=9	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=235	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=48
JC	417	.	NC_000913	3720633	1	NC_000913	4452703	-1	0	alignment_overlap=2	coverage_minus=17	coverage_plus=21	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=242	key=NC_000913__3720633__1__NC_000913__4452705__-1__2____251__251__0__0	max_left=246	max_left_minus=242	max_left_plus=246	max_min_left=115	max_min_left_minus=115	max_min_left_plus=104	max_min_right=116	max_min_right_minus=116	max_min_right_plus=110	max_pos_hash_score=486	max_right=244	max_right_minus=244	max_right_plus=236	neg_log10_pos_hash_p_value=0.2	new_junction_coverage=1.13	new_junction_read_count=39	polymorphism_frequency=1.000e+00	pos_hash_score=32	prediction=consensus	read_count_offset=3	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=2	side_1_read_count=NA	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=239	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=38
JC	418	.	NC_000913	3722075	-1	NC_000913	4452701	1	0	alignment_overlap=1	coverage_minus=13	coverage_plus=21	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=243	key=NC_000913__3722076__-1__NC_000913__4452701__1__1____251__251__0__0	max_left=248	max_left_minus=242	max_left_plus=248	max_min_left=109	max_min_left_minus=102	max_min_left_plus=109	max_min_right=116	max_min_right_minus=116	max_min_right_plus=105	max_pos_hash_score=488	max_right=247	max_right_minus=247	max_right_plus=236	neg_log10_pos_hash_p_value=0.4	new_junction_coverage=1.01	new_junction_read_count=35	polymorphism_frequency=1.000e+00	pos_hash_score=27	prediction=consensus	read_count_offset=3	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=1	side_2_possible_overlap_registers=241	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=34
JC	419	.	NC_000913	3822646	1	NC_000913	3822651	-1	0	alignment_overlap=0	coverage_minus=26	coverage_plus=18	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=244	key=NC_000913__3822646__1__NC_000913__3822651__-1__0____251__251__0__0	max_left=246	max_left_minus=246	max_left_plus=229	max_min_left=123	max_min_left_minus=119	max_min_left_plus=123	max_min_right=119	max_min_right_minus=119	max_min_right_plus=104	max_pos_hash_score=490	max_right=239	max_right_minus=232	max_right_plus=239	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.26	new_junction_read_count=44	polymorphism_frequency=9.670e-01	pos_hash_score=41	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=244	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.09	side_2_overlap=0	side_2_possible_overlap_registers=244	side_2_read_count=3	side_2_redundant=0	total_non_overlap_reads=44
JC	420	.	NC_000913	3938983	1	NC_000913	4498181	1	0	alignment_overlap=0	coverage_minus=21	coverage_plus=26	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=244	key=NC_000913__3938983__1__NC_000913__4498181__1__0____251__251__0__1	max_left=250	max_left_minus=250	max_left_plus=241	max_min_left=122	max_min_left_minus=102	max_min_left_plus=122	max_min_right=124	max_min_right_minus=121	max_min_right_plus=124	max_pos_hash_score=490	max_right=248	max_right_minus=248	max_right_plus=234	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.38	new_junction_read_count=48	polymorphism_frequency=1.000e+00	pos_hash_score=44	prediction=consensus	read_count_offset=5	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=239	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=47
JC	421	.	NC_000913	3938987	-1	NC_000913	4499511	-1	0	alignment_overlap=0	coverage_minus=6	coverage_plus=21	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=244	key=NC_000913__3938987__-1__NC_000913__4499511__-1__0____251__251__0__1	max_left=247	max_left_minus=92	max_left_plus=247	max_min_left=92	max_min_left_minus=92	max_min_left_plus=92	max_min_right=125	max_min_right_minus=0	max_min_right_plus=125	max_pos_hash_score=490	max_right=243	max_right_minus=243	max_right_plus=222	neg_log10_pos_hash_p_value=0.4	new_junction_coverage=0.83	new_junction_read_count=29	polymorphism_frequency=1.000e+00	pos_hash_score=26	prediction=consensus	read_count_offset=5	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=239	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=27
UN	422	.	NC_000913	15570	15570
UN	423	.	NC_000913	15573	15573
UN	424	.	NC_000913	15577	16501
UN	425	.	NC_000913	16503	16505
UN	426	.	NC_000913	16508	16508
UN	427	.	NC_000913	16513	16513
UN	428	.	NC_000913	16525	16526
UN	429	.	NC_000913	20014	20350
UN	430	.	NC_000913	62379	88274
UN	431	.	NC_000913	223902	223902
UN	432	.	NC_000913	223909	223909
UN	433	.	NC_000913	223911	223911
UN	434	.	NC_000913	223913	223913
UN	435	.	NC_000913	223919	223919
UN	436	.	NC_000913	223925	223926
UN	437	.	NC_000913	223930	223930
UN	438	.	NC_000913	223933	224587
UN	439	.	NC_000913	224589	224589
UN	440	.	NC_000913	225064	225065
UN	441	.	NC_000913	225068	225068
UN	442	.	NC_000913	225070	225393
UN	443	.	NC_000913	225400	225400
UN	444	.	NC_000913	227207	227207
UN	445	.	NC_000913	227212	227215
UN	446	.	NC_000913	227217	228455
UN	447	.	NC_000913	228462	228462
UN	448	.	NC_000913	228464	228464
UN	449	.	NC_000913	244565	244565
UN	450	.	NC_000913	257908	258683
UN	451	.	NC_000913	270766	270766
UN	452	.	NC_000913	270772	271085
UN	453	.	NC_000913	274185	274929
UN	454	.	NC_000913	279386	279386
UN	455	.	NC_000913	279388	279705
UN	456	.	NC_000913	279708	279711
UN	457	.	NC_000913	279716	279717
UN	458	.	NC_000913	279719	279720
UN	459	.	NC_000913	279722	279723
UN	460	.	NC_000913	290860	291175
UN	461	.	NC_000913	315458	315458
UN	462	.	NC_000913	315462	315462
UN	463	.	NC_000913	315464	316259
UN	464	.	NC_000913	357886	357886
UN	465	.	NC_000913	357888	357888
UN	466	.	NC_000913	357897	357897
UN	467	.	NC_000913	357909	357909
UN	468	.	NC_000913	357918	357931
UN	469	.	NC_000913	357933	357936
UN	470	.	NC_000913	357939	357940
UN	471	.	NC_000913	366181	366273
UN	472	.	NC_000913	381467	381467
UN	473	.	NC_000913	381470	381471
UN	474	.	NC_000913	381475	381475
UN	475	.	NC_000913	381480	381481
UN	476	.	NC_000913	381488	382393
UN	477	.	NC_000913	391892	391898
UN	478	.	NC_000913	391900	392736
UN	479	.	NC_000913	526085	526085
UN	480	.	NC_000913	526090	526092
UN	481	.	NC_000913	526096	526096
UN	482	.	NC_000913	526098	526492
UN	483	.	NC_000913	526495	526495
UN	484	.	NC_000913	526497	526497
UN	485	.	NC_000913	566967	567844
UN	486	.	NC_000913	574745	574745
UN	487	.	NC_000913	574759	574759
UN	488	.	NC_000913	574762	574762
UN	489	.	NC_000913	574764	575552
UN	490	.	NC_000913	608228	609132
UN	491	.	NC_000913	609140	609140
UN	492	.	NC_000913	609153	609153
UN	493	.	NC_000913	686038	686038
UN	494	.	NC_000913	686041	686042
UN	495	.	NC_000913	686045	686046
UN	496	.	NC_000913	686048	686051
UN	497	.	NC_000913	686054	686054
UN	498	.	NC_000913	686057	686060
UN	499	.	NC_000913	686063	686063
UN	500	.	NC_000913	686065	686067
UN	501	.	NC_000913	686073	686073
UN	502	.	NC_000913	688060	688868
UN	503	.	NC_000913	688875	688875
UN	504	.	NC_000913	688885	688885
UN	505	.	NC_000913	766692	766692
UN	506	.	NC_000913	802118	802118
UN	507	.	NC_000913	890228	890228
UN	508	.	NC_000913	1094451	1095291
UN	509	.	NC_000913	1095298	1095301
UN	510	.	NC_000913	1095307	1095307
UN	511	.	NC_000913	1097316	1097316
UN	512	.	NC_000913	1097327	1097327
UN	513	.	NC_000913	1097367	1097371
UN	514	.	NC_000913	1097373	1097374
UN	515	.	NC_000913	1097376	1097377
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