mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.39.0
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 251 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 579,457 | 0 | A | G | 79.5% | 213.7 / 48.6 | 114 | I46I (ATT→ATC) | ybcV | DUF1398 domain‑containing protein YbcV |
| * | NC_000913 | 580,020 | 0 | G | A | 79.4% | 179.8 / 39.8 | 99 | R47R (AGG→AGA) | ybcW | uncharacterized protein YbcW |
| * | NC_000913 | 579,717 | 0 | A | C | 77.7% | 211.9 / 42.7 | 106 | intergenic (‑123/‑163) | ybcV/ybcW | DUF1398 domain‑containing protein YbcV/uncharacterized protein YbcW |
| * | NC_000913 | 1,429,069 | 0 | T | A | 77.3% | 179.3 / 44.1 | 99 | G7G (GGT→GGA) | stfR | putative prophage side tail fiber protein StfR |
| * | NC_000913 | 579,811 | 0 | C | T | 76.8% | 194.5 / 57.5 | 113 | intergenic (‑217/‑69) | ybcV/ybcW | DUF1398 domain‑containing protein YbcV/uncharacterized protein YbcW |
| * | NC_000913 | 578,729 | 0 | A | G | 75.7% | 183.0 / 53.2 | 105 | A55A (GCT→GCC) | borD | prophage lipoprotein BorD |
| * | NC_000913 | 579,385 | 0 | A | G | 75.5% | 177.3 / 55.6 | 110 | N70N (AAT→AAC) | ybcV | DUF1398 domain‑containing protein YbcV |
| * | NC_000913 | 1,429,126 | 0 | A | C | 75.2% | 196.5 / 71.1 | 125 | A26A (GCA→GCC) | stfR | putative prophage side tail fiber protein StfR |
| * | NC_000913 | 578,809 | 0 | T | C | 75.0% | 124.5 / 52.6 | 96 | T29A (ACA→GCA) | borD | prophage lipoprotein BorD |
| * | NC_000913 | 579,099 | 0 | A | . | 74.0% | 181.6 / 126.8 | 105 | intergenic (‑206/+85) | borD/ybcV | prophage lipoprotein BorD/DUF1398 domain‑containing protein YbcV |
| * | NC_000913 | 1,429,111 | 0 | A | C | 73.5% | 197.7 / 67.0 | 118 | T21T (ACA→ACC) | stfR | putative prophage side tail fiber protein StfR |
| * | NC_000913 | 1,634,569 | 0 | A | T | 73.5% | 16.7 / 36.5 | 50 | F106Y (TTT→TAT) | tfaQ | putative tail fiber assembly protein TfaQ |
| * | NC_000913 | 578,831 | 0 | T | C | 73.4% | 129.9 / 54.3 | 95 | T21T (ACA→ACG) | borD | prophage lipoprotein BorD |
| * | NC_000913 | 1,429,128 | 0 | A | G | 73.4% | 189.2 / 77.1 | 125 | K27R (AAA→AGA) | stfR | putative prophage side tail fiber protein StfR |
| * | NC_000913 | 579,127 | 0 | T | C | 72.9% | 157.2 / 72.9 | 107 | intergenic (‑234/+57) | borD/ybcV | prophage lipoprotein BorD/DUF1398 domain‑containing protein YbcV |
| * | NC_000913 | 1,429,114 | 0 | C | T | 72.9% | 175.6 / 71.8 | 120 | I22I (ATC→ATT) | stfR | putative prophage side tail fiber protein StfR |
| * | NC_000913 | 1,429,160 | 0 | C | G | 72.7% | 244.5 / 93.7 | 128 | L38V (CTG→GTG) | stfR | putative prophage side tail fiber protein StfR |
| * | NC_000913 | 1,429,171 | 0 | A | G | 72.7% | 202.8 / 87.6 | 129 | E41E (GAA→GAG) | stfR | putative prophage side tail fiber protein StfR |
| * | NC_000913 | 579,134 | 0 | T | C | 72.6% | 161.5 / 68.2 | 106 | intergenic (‑241/+50) | borD/ybcV | prophage lipoprotein BorD/DUF1398 domain‑containing protein YbcV |
| * | NC_000913 | 579,146 | 0 | A | G | 72.5% | 151.0 / 65.3 | 109 | intergenic (‑253/+38) | borD/ybcV | prophage lipoprotein BorD/DUF1398 domain‑containing protein YbcV |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 696506 | 24 (0.660) | 3 (0.120) | 3/334 | 2.9 | 17.0% | intergenic (‑2/+36) | glnX/glnV | tRNA‑Gln/tRNA‑Gln |
| ? | NC_000913 | 696619 = | 13 (0.520) | intergenic (‑3/+45) | glnV/metU | tRNA‑Gln/tRNA‑Met | |||||
| * | ? | NC_000913 | 1094245 = | NA (NA) | 4 (0.110) | 4/486 | 3.4 | 12.1% | noncoding (1258/1258 nt) | IS3 | repeat region |
| ? | NC_000913 | = 3429990 | 29 (0.800) | coding (34/258 nt) | yrdB | DUF1488 domain‑containing protein YrdB | |||||
| * | ? | NC_000913 | 2288919 = | NA (NA) | 5 (0.140) | 3/488 | 3.8 | 9.4% | noncoding (1195/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | = 2916221 | 48 (1.320) | coding (1165/2757 nt) | barA | sensor histidine kinase BarA | |||||
| * | ? | NC_000913 | 2170171 = | NA (NA) | 4 (0.110) | 3/484 | 3.8 | 12.5% | noncoding (1/1258 nt) | IS3 | repeat region |
| ? | NC_000913 | 3429988 = | 28 (0.770) | coding (36/258 nt) | yrdB | DUF1488 domain‑containing protein YrdB | |||||
| * | ? | NC_000913 | 315229 = | NA (NA) | 4 (0.110) +T |
3/486 | 3.8 | 12.6% | noncoding (1/1255 nt) | IS3 | repeat region |
| ? | NC_000913 | 3429986 = | 28 (0.770) | coding (38/258 nt) | yrdB | DUF1488 domain‑containing protein YrdB | |||||