New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	2170171 =	NA (NA)	4 (0.110)	3/484	3.8	12.5%	noncoding (1/1258 nt)	IS3	repeat region
	?	NC_000913	3429988 =	28 (0.770)					coding (36/258 nt)	yrdB	DUF1488 domain‑containing protein YrdB
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

AATACCATCAGCACCGACAAACATTAAATCGGCATTAATATCC‑TGTAATGAACGCTCGGCAATGGAACCATGCATCGAGCGCGTTTTATGGCGGACCGTGCCACCACAGACGACCAGAGTAATGTCTTTATTTTCGGAAAGGGCAAACGCTGCCGGGAGACTGTTGGTAATCACCGTGATATTTTTGGCGGTCATTAATCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAGTGAAGCCCTGAAGCTTGCTGAACGCATCGGTGTTACTGCCGCAGCCCGTGAACTCAGCCTGTATGAATCACAACTCTACAACTGGCGCAGTAAACAGCAAAATCAGCAGACGTCTTCTG  >  NC_000913/2169924‑2170416                                                                                                                                                                                                                                                         |                                                                                                                                                                                                                                                      aaTACCATCAGCACCGACAAACATTAAATCGGCATTAATATCC‑TGTAATGAACGCTCGGCAATGGAACCATGCATCGAGCGCGTTTTATGGCGGACCGTGCCACCACAGACGACCAGAGTAATGTCTTTATTTTCGGAAAGGGCAAACGCTGCCGGGAGACTGTTGGTAATCACCGTGATATTTTTGGCGGTCATTAATCCTTCGGCGATAAGCATTGTCGTACTGCCGCTGTCGAGAATAACGGTCTGAt                                                                                                                                                                                                                                                    <  1:83126/251‑1 (MQ=255)  aTACCATCAGCACCGACAAACATTAAATCGGCATTAATATCC‑TGTAATGAACGCTCGGCAATGGAACCATGCATCGAGCGCGTTTTATGGCGGACCGTGCCACCACAGACGACCAGAGTAATGTCTTTATTTTCGGAAAGGGCAAACGCTGCCGGGAGACTGTTGGTAATCACCGTGATATTTTTGGCGGTCATTAATCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATc                                                                                                                                                                                                                                                   >  1:395913/1‑251 (MQ=255)     ccATCAGCACCGACAAACATTAAATCGGCATTAATATCC‑TGTAATGAACGCTCGGCAATGGAACCATGCATCGAGCGCGTTTTATGGCGGACCGTGCCACCACAGACGACCCGAGTAATGTCTTTATTTTCGGAAAGGGCAAACGCTGCCGGGCGACTGTTGGTAATCACCGTGATATTTTTTGCGTTCCTTAATCCTTCGGCGATAAGCCTTGTCGTACTTCCGCTTTCGAGAATAACGGTCTGATCttt                                                                                                                                                                                                                                                >  1:390887/1‑250 (MQ=255)            cACCGACAAACATTAAATCGGCATTAATATCC‑TGTAATGAACGCTCGGCAATGGAACCATGCATCGAGCGCGTTTTATGGCGGACCGGGCCACCACCGACGAACAGAGTAATGTCTTTATTTTCGGAAAGGGCAAACGCTGCCGGGAGACTGTTGGTAATCACCGGGATATTTTTGGCGGTCCTTAATCCGTCGGCGATAAACCATGTCGTAATTCCGCTGTCGCGAATAACGGTCTGATCTTACCCAGc                                                                                                                                                                                                                                          >  2:159177/1‑250 (MQ=255)            cACCAACAAACATTAAATCTGCATTAATATCC‑TGTAATGAACGCTCGGCAATGGAACCATGCATCGAGCGCGTTTTATGGCGGACCGTGCCACCACAGACGACCAGAGTAATGTCTTTATTTTCGGAAAGGGCAAACGCTGCCGGGAGACTGTTGGTAAGCACCGTGATATTTTTGGCGGTCATTAATCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCa                                                                                                                                                                                                                                         <  1:30259/251‑1 (MQ=255)             aCCGACAAACATTAAATCGGCATTAATATCC‑TGTAATGAACGCTCGGCAATGGAACCATGCATCGAGCGCGTTTTATGGCGGACCGTGCCACCACAGAAGACCAGAGTAATGTCTTTATTTTCGGAAAGGGCAAACGCTGCCGGGAGACTGTTGGTAATCACCGTGATATTTTTGGCGGTCATTAATCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTAACCAGCa                                                                                                                                                                                                                                         >  1:165066/1‑250 (MQ=255)              ccGACAAACATTAAATCGGCATTAATATCC‑TGTAATGAACGCTCGGCAATGGAACCATGCATCGAGCGCGTTTTATGGCGGACCGAGACACCAAAGACGACCAGAGTAATGTCTTTATTTTCGGAAAGGGAAAACGCTGCCGGGAGACTGTTAGTAATCAACGCGGTATTTTTGGCGGTCATTAATCCTTCGGCGATAAGCATTGTCGTACTTACGCTGTCGAGAAAAACGGTCTGATCTTACCCAGCAAt                                                                                                                                                                                                                                       >  1:266670/1‑251 (MQ=255)                 aCAAACATTATATCGGCATAAATTTCCCTG‑AATGATCGCTCCGTAATGGAAACATGCAGCGAGCTCGTTTGATGACTGAACGTGTCACCACAGACGACCAGAGTAATGTCTTTATTTTCGGAAAGGGCCAACTCTGCAGGGAGACTGTTGGTAATCTCCGTGATATTGTTGGCGGTCATTAATCCTTCGGCGATAAGCATTGTCGTAATTCCGCTGTCGATAATAACGGTCTGATCTTACCCAGCAATAgg                                                                                                                                                                                                                                    <  2:169967/251‑2 (MQ=255)                          aaatatgaaTTAATATCC‑TTAAATGAACGCACGGCAAAGGAACCATGGATCGAGCGCGTTTTATGGCGGACCGTGCCTCCTCAGACGACCAGAGTAATGTCTTTATTTGCGGAAAGGGCAAACGCTGCCGGGAGACTGTTTGTAATCACCGTGATATTTTTGGCGGTCATTAATCCTTCGGCGATAAGCATTGTCGTATTTCCGCTGTCGAGAATAACGGGCTGATCTTGCCCATCAAAAGTGGACAcgc                                                                                                                                                                                                                            <  2:24983/242‑1 (MQ=255)                              cGGCATTAATATCC‑TTGAATGAACGCTCTGCAATGGAACCATGCATCTAGCGCGTTTTATGGCGGACCGTGCCACTACAGATGTCCAGAGTAATGTCTTTATTTTCGGAAAGGGCGATCGCTGCCGGGAGCCTGTTTGTAATCTCCGTGATTTTTTTGTCTGTGATTAATCCTTCGGCGATAAGCATTGTCGTGCTGGCTCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTa                                                                                                                                                                                                                       <  1:58061/251‑1 (MQ=255)                                          cc‑TGTCATGAACGCTCGGCAATGGAACCATGCATCGAGCGCGTTTTATGGCGGACCGTGCCACCCCAGACGACCAGAGTAATGTCTTTATTTTCGGAAAGGGCAAACGCTGCCGGGAGACTGTTGGTAATCACCGTGATATTTTTGGCGGTCATTAATCCTTCGGCGATAGTCATTGTCGTACTTCCGCTGTCGGGAATAACGGTCTGATCTTCCCCCGCAATAGTGGACACGCGGATAAGTGTGGAAAct                                                                                                                                                                                                           >  1:87669/1‑251 (MQ=255)                                                  tGAACGCTCGGCAATGGAACCATGCATCGAGCGCGTTTTATGGCGGACCGTGCCACCACAGACGACCAGAGTAATGTCTTTATTTTCGGAAAGGGCAAACGCTGCCGGGAGACTGTTGGTAATCACCGTGATATTTTTGGCGGTCATTAATCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCtcagtc                                                                                                                                                                                                    >  1:159538/1‑251 (MQ=255)                                                    aatgCTCGGCAATGGAACCATGCATCGAGCGCGTTTTATGGCGGACCGTGCCACCACAGACGACCAGATGAATGTCTTTATTTCCGGAAAGGGCAAACGCTGCCGGGAGACTGTTGGTAATATCCGTGATATTTTTGGCGGTCATTAATCCTTCGGCGATACGCATTGGCGTACTTCCTCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGTCACGCGGCTAATTGAGTAATCTCtcagtcag                                                                                                                                                                                                  <  2:28226/248‑1 (MQ=255)                                                                       aTGCATCGAGCGCGTTTTATGGCGGACCGTGCCACCACAGACGACCAGAGTAATGTCTTTATTTTCGGAAAGGTCAAACGCTGCCGGGAGACTGTTGGTAATCACCGTGATATTTTTGGCGGTCATTAATCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATTACaa                                                                                                                                                                                >  1:249932/1‑250 (MQ=255)                                                                             cGAGCGCGTTTTAATGCTGGCCGTGCCACCACAGTCGACCAGAGTAATGTCTTTATGTTCGGAAAGGGCAAACGCTACAGTGTGACTGTTGGTAATCTCCGTTATACTTTTGGCGGTCATTAATCCTTCGGCGATAGGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGTACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACat                                                                                                                                                                          <  2:155265/250‑2 (MQ=25)                                                                                                  cgcaccaccaCAGTCGACCAGAGTAATGTTCTTATTGTCGGAAATGGCAAGCGCTGCCTGGAGACTGTGGTTAATCACCGTGATATTTTTGGCGACCATTAATCCTCCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACTGTCTGATCGTACCCAGCAATAGGGGACACGCGGCGAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAATCCCCg                                                                                                                                                    <  2:22482/247‑1 (MQ=21)                                                                                                  cGTGCCACCACAGACGACCAGAGTAATGTCTTTATTTTCGGAAAGGGCAAACGCTGCCGGGAGACTGTTGGTAATCACCGTGATATTTTTGGCGGTCATTAATCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCg                                                                                                                                                    >  1:324208/1‑251 (MQ=255)                                                                                                                    cAGAGTCATGTCTTTATTTTCGGAAAGGGCAAACGCTGCCGGGAGACTGTTGGTAATCACCGTGATATTTTTGGCGGTCATTAATCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGCCAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGcatg                                                                                                                                   >  2:429570/1‑247 (MQ=255)                                                                                                                                       tCGGAAAGGGCAAACGCTGCCGGGAGACTGTTGGTAATCACCGTGATATTTTTGGCGGTCATTAATCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACt                                                                                                                                                                                          >  2:11135/1‑176 (MQ=255)                                                                                                                                       tCGGAAAGGGCAAACGCTGCCGGGAGACTGTTGGTAATCACCGTGATATTTTTGGCGGTCATTAATCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACt                                                                                                                                                                                          <  1:11135/176‑1 (MQ=255)                                                                                                                                           aaaGGGCAAACGCTGCCGGGAGACTGTTGGTAATCACCGTGATATTTTTGGCGGTCATTAATCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAGTGAAGCCCTGAAGc                                                                                                           >  1:33462/1‑251 (MQ=255)                                                                                                                                                  aaaCGCTGCCGGGAGACTGTTGGTAATCACCGTGATATTTTTGGCGGTCATTAATCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAGTGAAGCCCTGAAGCTTGCTg                                                                                                     >  1:166495/1‑250 (MQ=255)                                                                                                                                                         gCCGGGAGACTGTTGGTAATCACCGTGATATTTTTGGCGGTCATTAATCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAGTGAAGCCCTGAAGCTTGCTGAACGCa                                                                                               <  1:54518/249‑1 (MQ=255)                                                                                                                                                                          aaTCTCCGTGATATTTTTGGCGGTCAGTAATCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAGTGAAGCCCTGAAGCTTGCTGAACGCATCGGTGTTACTGCCGCAg                                                                             <  2:12781/250‑1 (MQ=255)                                                                                                                                                                              actgttatatTTGTGGCGGTCATTAATCCGTCGGCGATAAGCAGTGGCGGACAGCAGCGGTCGAGAAGAACGGTCTGATCATACCCAGCAATAGTTGACACGCGGCTAAGAGAGTAAACTCTTAGTCAGAGGTGACTCACATGACAAAAACAGTATCAAGCAGTAAAAAAACCCAGATACAGCATACGCCTGAATTTCGCAGTGAAGCATGGAAGCTTGCTGAACGTAGCGGTGTTACTGCCGCAGTCCGt                                                                        <  2:390887/245‑1 (MQ=9)                                                                                                                                                                                            ggCGGTCATTAATCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAAcc                                                                                                                                                       <  1:347458/158‑1 (MQ=255)                                                                                                                                                                                            ggCGGTCATTAATCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGAGGCTAAGTGAGTAAACTCTCAGCCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAAcc                                                                                                                                                       >  2:347458/1‑158 (MQ=255)                                                                                                                                                                                                      aaaccTTCGGCGATAAGCATTGGCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTAACCAGCAATAGTGGACACGCGGCTAAGTGAGTACACTCTCAGTCAGAGGTGACTCACATGCCAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAGGGAAGCCCTTAAGCTTGCTGAACGCATCGGTGTTACTGCCGCAGCCCGTGAACTCAGCCTGTATGAATcaca                                                 <  2:60226/247‑1 (MQ=17)                                                                                                                                                                                                       aTCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAGTGAAGCCCTGAAGCTTGCTGAACGCATCGGTGTTACTGCCGCAGCCCGTGAACTCAGCCTGTATGAATCACAAc                                               <  1:159177/251‑1 (MQ=255)                                                                                                                                                                                                                                        tGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAGTGAAGCCCTGAAGCTTGCTGAACGCATCGGTGTTACTGCCGCAGCCCGTGAACTCAGCCTGTATGAATCACAACTCTACACCTGGCGCAGttacaagaaaaataggc              >  2:32010/1‑235 (MQ=255)                                                                                                                                                                                                                                        tGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAGTGAAGCCCTGAAGCTTGCTGAACGCATCGGTGTTACTGCCGCAGCCCGTGAACTCAGCCTGTATGAATCACAACTCTACAACTGGCGCAGTAAACAGCAAAATcagc              >  1:445855/1‑251 (MQ=35)                                                                                                                                                                                                                                                    cGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAGTGAAGCCCTGAAGCTTGCTGAACGCATCGGTGTTACTGCCGCAGCCCGTGAACTCAGCCTGTATGAATCACAACTCTACAACTGGCGCAGTAAACAGCAAAATCAGCAGACGTctgctg  <  1:254701/251‑1 (MQ=14)                                                                                                                                                                                                                                                         |                                                                                                                                                                                                                                                      AATACCATCAGCACCGACAAACATTAAATCGGCATTAATATCC‑TGTAATGAACGCTCGGCAATGGAACCATGCATCGAGCGCGTTTTATGGCGGACCGTGCCACCACAGACGACCAGAGTAATGTCTTTATTTTCGGAAAGGGCAAACGCTGCCGGGAGACTGTTGGTAATCACCGTGATATTTTTGGCGGTCATTAATCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAGTGAAGCCCTGAAGCTTGCTGAACGCATCGGTGTTACTGCCGCAGCCCGTGAACTCAGCCTGTATGAATCACAACTCTACAACTGGCGCAGTAAACAGCAAAATCAGCAGACGTCTTCTG  >  NC_000913/2169924‑2170416

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.