New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 696506	24 (0.660)	3 (0.120)	3/334	2.9	17.0%	intergenic (‑2/+36)	glnX/glnV	tRNA‑Gln/tRNA‑Gln
	?	NC_000913	696619 =	13 (0.520)					intergenic (‑3/+45)	glnV/metU	tRNA‑Gln/tRNA‑Met
Rejected: Frequency below/above cutoff threshold.

AATATGCGTTAGGGTTGTAGCCTTACAACATTGCCGGATGCGTGCCAACCGTAGGTCGGATAAGACGCGGCAGCGTCGCATCCGACATTGAAGGATAAGACGTGTCAACATCGCATTCGACATTGAATGAACGCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCTTTTTTAATGTGGCTGGGGTACGAGGATTCGAACCTCGGAATGCCGGAATCAGAATCCGGTGCCTTACCGCTTGGCGATACCCCAACTGGGTGCACTTACAAGGTAAGCGTCTTGAATAAATTGGCTGGGGTACGAGGATTCGAACCTCGGAATGCCGGAATCAGAATCCGGTGCCTTACCGCTTGGCGATACCCCAACAAATTGGTTTTGAATTTGCCGAACATATTCGATACATTCAGAATTTGGTGGCTACGACGGGATTCGAACCTGTGACCCCATCATTATGAGTGATGTGCTCTAACCAACTGAGCTACGTAGCCAGATTGTTTCTTCGAT  >  NC_000913/696257‑696756                                                                                                                                                                                                                                                          |                                                                                                                                                                                                                                                           aaTATGCGTTAGGGTTGTAGCCTTCCAACATTGCCCGAGGCGTGCCAATTGTAGGGCGGATAAGACGCGGCAGCGTCGCATCCGACATTGAAGGATAAGACGTGTCAACATCGCATTCGACATTGAATGAACGCAGAAAATCAAAAAGCTCGCCGAAGCGAGCTGTTTTAATGTGGCTGGGGTACGAGGATTCGAACCTCGTAATGCCGGAATCAGAATCCGGTGCCTTACCGCTTGGCGATACCCCAACt                                                                                                                                                                                                                                                           <  2:297899/251‑1 (MQ=38)           aGGGTTGTAGCCTTACAACATTGCCGGATGCGTGCCAACCGTAGGTCGGATAAGACGCGGCAGCGTCGCATCCGACATTGAAGGATAAGACGTGTCAACATCGCATTCGACATTGAATGATCGCAGAAAAGCAAAAAACTCGCCGAAGCGAGCTTTTTTAATGTGGCTGGGGTACGAGGATTCGAACCTCGGAATGCCGGAATCAGCATCAGGTGCCTTCCCGCTTGGCGATACCCCACCTGAGTGCACtt                                                                                                                                                                                                                                                 >  1:414641/1‑251 (MQ=39)                         acaacaTTGCCGGATGCGTGCCAACCGTAGGTCGGATAAGACGCGGCAGCGTCGCATCCGACATTGAAGGATAAGACGTGTCAACATCGCATTCGACATTGAATGAACGCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCTTTTTTAATGTGGCTGGGGTACGAGGATGCGAACCTCGGAATGCCGGAATCAGAATCCGGTGCCTTACCGCTTGGCGATACCCCAACTGGGTGCACTTACAAGGTAAGCGTc                                                                                                                                                                                                                                   <  1:265228/251‑1 (MQ=255)                                 gCCGGATGCGGGCCAAACGTAAGTCGGATAAGTCGCGGCAGGGTCGAAGCCGACATGGAAGGATAAGACGTGTCAACATCGCATGCGACATTGAATGAAAGCAGAAAAGCAATAAGCTCGCCGAAGCGAGCTGTTTTAATGTGGCTGGGGTACGAGGATTCGAACCTCGGAATGCCGGAATCAGACTCCGGTGCCTTACCGCTTGGCGATACACCAACTGGGTGCACTTACAAGGTTAGCGTCTTGAATaa                                                                                                                                                                                                                           <  2:99520/251‑1 (MQ=37)                                                 ccGTAGGTCGGATAAGACGCGGCAGCGTCGCATCCGACTTTGCAGGATAAGACGTGTCAACATCGCATTCGACATTGAATGAACGCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCTTTTTTAATGTGGCTGGGGTACGCGGATTCGAACCTCGGCATGCTGGAGTCAGAATCCGGTGCCTTACCGCTTGGCGATACCCCAACTGGGTGAACTTACCAGGTAAGCggatttaagcacttttctggggtacg                                                                                                                                                                                                            >  2:68880/1‑225 (MQ=37)                                                     aGGTCGGATAAGACGCGGCAGCGTCGCATCCGACATTGAAGGATAAGACGTGTCAACATCGCATTCGACATTGAATGAACGCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCTTTTTTAATGTGGCTGGGGTACGAGGATTCGAACCTCGGAATGCCGGAATCAGAATCCGGTGCCTTACCGCTTGGCGATACCCCAACTGGGTGCACTTACAAGGTAAGCGTCTTGAATAAATTGGCTGGGGTACGAGGAt                                                                                                                                                                                                       <  1:105666/251‑1 (MQ=255)                                                          ggATAAGACGCGGCAGCGTCGCATCCGACATTGAAGGATAAGACGTGTCAACATCGCATTCGACATTGAATGAACGCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCTTTTTTAATGTGGCTGGGGTACGAGGATTCGAACCTCGGAATGCCGGGATCAGAATCCGGTGCCTTACCGCTTGGCGATACCCCAACTGGGTGCACTTACAAGGTAAGCGTCTTGAATAAATTGGCTGGGGTACGAGGATTCGa                                                                                                                                                                                                   >  1:340023/1‑250 (MQ=255)                                                                     ggCAGCGTCGCATCCGACATTGAAGGATAAGACGTGTCAACATCGCATTCGACATTGAATGAACGCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCTTTTTTAATGTGGCTGGGGTACGAGGATTCGAACCTCGGAATGCCGGAATCAGAATCCGGTGCCTTACCGCTTGGCGATACCCCAACaaattggttttgaatttgccgaacatattcgatacattcagaatttggtggctacgacgggattcgaac                                                                                                                                                                                       >  1:191521‑M1/1‑182 (MQ=255)                                                                             cGCATCCGACATTGAAGGATAAGACGTGTCAACATCGCATTCGACATTGAATGAACGCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCTTTTTTAATGTGGCTGGGGTACGAGGATTCGAACCTCGGAATGCCGGAATCAGAATCCGGTGCCTTACCGCTTGGCGATACCCCAACTGGGTGCACTTACAAGGTAAGCGTCTTGAATAAATTGGCTGGGGTACGAGGATTCGAACCTCGGAATGCCGGAATCa                                                                                                                                                                               <  1:126020/251‑1 (MQ=255)                                                                                             ggATAAGACCAGTCACCGTCGCATTAGCAATTGAATGAACGCAGAATGGCTAAAAGCCCAACGTAGGGAGCTTTTTTAATGTGGCTGGGGTACGAGGATTCGAACCTCGGAATGCCGGAATCAGAATCCGGTGCCTTACCGCTTGGCGATACCCCAACaaattggttttgaatttgccgaacatattcgatacattcagaatttggtggctacgacgggattcgaacctgtgaccccatcattatgagtga                                                                                                                                                               <  2:90978‑M1/251‑94 (MQ=255)                                                                                               aTAAGACGTGTCAACATCGCATTCGACATTGAATGAACGCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCTTTTTTAATGTGGCTGGGGTACGAGGATTCGAACCTCGGAATGCCGGAATCAGAATCCGGTGCCTTACCGCTTGGCGATACCCCAACaaattggttttgaatttgccgaacatattcgatacattcagaatttggtggctacgacgggattcgaacctgtgaccccatcattatgagtgatg                                                                                                                                                             <  2:191521‑M1/251‑96 (MQ=255)                                                                                                        gtCAACATCGCATTAGATATTGAATGAACGCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCTTTTTTAATGTGGCTGGGGTACGAGGATTCGAACCTCGGAATGCCGGAATCAGAATCCGGTGCCTTACCGCTTGGCGATACCCCAACTGGGTGCACTTACAAGGTAAGCGTCTTGAATAAATTGGCTGGGGTACGAGGATTCGAACCTCGGAATGCCGGAATCAGAATCCGGTGCCTTACCGCTTGGCGAt                                                                                                                                                    <  1:246989/251‑1 (MQ=255)                                                                                                                      cGACATTGAATGAACGCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCTTTTTTAATGTGGCTGGGGTACGAGGATTCGAACCTCGGAATGCCGGAATCAGAATCCGGTGCCTTACCGCTTGGCGATACCCCAACTGGGTGCACTTACAAGGTAAGCGTCTTGAATAAATTGGCTGGGGTACGAGGATTCGAACCTCGGAATGCCGGAATCAAAAACCGGTGCCTTACCGCTTGGCGATACCCCAAAAAATTg                                                                                                                                      >  1:443581/1‑251 (MQ=255)                                                                                                                           ttGAATGAACGCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCTTTTTTAATGTGGCTGGGGCACGAGGATTCGAACCTCGGAATGCCGGAATCAGAATCCGGTGCCTTACCGCTTGGCGATACCCCAACTGGTTGCACTTACAAGGTAAGCGTCTTGAATAAATTGGCTGGGGTTCGAGGATTCGCACCCTGCAACGCCGGAATCAGATTCCGCTGCCTTACCTCTCGGCGATACACCAACaaaacgggttt                                                                                                                                 >  1:398581/1‑243 (MQ=37)                                                                                                                            tgaatgaaCGCAGAAAAGCACAAAGCTCTCCGAAGCGAGCTTTTTTAATTTGGCGGGGGTACGAGGATTCGAACCTCGTAATGCCGGAATCAGAATCCGGTGCCTTACCGCTTGGCGATACCCCAACTGGGTGCACGTACAAGGTAAGCGTCTTGAATAAATTGGCTGGGGTACGAGGATTCGAACCTCGGAATGCCGGAATCAGAATCCGGTGTCTTACCGCTTGGCGATACCCCAACAAATTGGtttt                                                                                                                                 <  1:242796/250‑1 (MQ=38)                                                                                                                                           aaGCAAAAAGCTCGCCGAAGCGAGCTTTTTTAATGTGGCTGGGGTACGAGGATTCGAACCTCGGAATGCCGGAATCAGAATCCGGTGCCTTACCGCTTGGCGATACCCCAACTGGGTGCACTTACAAGGTAAGCGTCTTGAATAAATTGGCTGGGGTACGAGGATTCGAACCTCGGAATGCCGGAATCAGAATCCGGTGCCTTACCGCTTGGCGATACCCCAACAAATTGGTTTTGAATTTGCCGAACata                                                                                                                 <  1:346847/251‑1 (MQ=255)                                                                                                                                           aaGCAAAAAGCTCGCCGAAGCGAGCTTTTTTAATGTGGCTGGGGTACGAGGATTCGAACCTCGGAATGCCGGAATCAGAATCCGGTGCCTTACCGCTTGGCGATACCCCAACTGGGTGCACTTACAAGGTAAGCGTCTTGAATAAATTGGCTGGGGTACGAGGATTCGAACCTCGGAATGCCGGAATCAGAATCCGGTGCCTTACCGCTTGGCGATACCCCAACAAATTGGGTTTGAATTTGCCGTACat                                                                                                                  >  1:154097/1‑250 (MQ=255)                                                                                                                                                         ccGAAGCGAGCTTTTTTAATGTGGCTGGGGTACGAGGATTCGAACCTCGGAATGCCGGAATCAGAATCCGGTGACTTACCGCTTGGCGATACCCCAACTGGGTGCACTTACACGGTAAGCGTCTTGAATAAATTGGCTGGGGt                                                                                                                                                                                                               >  2:254148/1‑143 (MQ=255)                                                                                                                                                         ccGAAGCGAGCTTTTTTAATGTGGCTGGGGTACGAGGATTCGAACCTCGGAATGCCGGAATCAGAATCCGGGGCCTTACCGCTTGGCGATACCCCAACTGGGTGCACTTACAAGGTAAGCGTCTTGAATAAATTGGCTGGGGt                                                                                                                                                                                                               <  1:254148/143‑1 (MQ=255)                                                                                                                                                               cGAGCTGTTTTAATGTGGCTTGGGTACGAGGATTCGAACCTCGGAATGACTGAACCAGATGCCGGTGCCTTACCGCTTGGCGATACCCCAACTGGGTGCACTTACAAGGTAATCGTCGTGAATAAAGTGGCAGGGGTACGAGGATTCCAATCTCGGAATGCCTGAATCAGAATCCGGTGCCTTACCGCTTGGCGATTCCCCAACAAATTGGTTTTGAATTTGCCGAACATATTCGATACATTCAGAATTtg                                                                                             <  1:282361/251‑1 (MQ=37)                                                                                                                                                                           aTGTGGCTGGGGTACGAGGATTCGAACCTCGGAATGCCGGAATCAGAATCCGGTGCCTTACCGCTTGGCGATACCCCAACTGGGTGCACTTACAAGGTAAGCGTCTTGAATAAATTGGCTGGGGTACGAGGATTCGAACCTCGGAATGCCGGAATCAGAATCCGGTGCCTTACCGCTTGGCGATACCCCAACAAATTGGTTTTGAATTTGCCGAACATATTCGATACATTCAGAATTTGGTGGCTacgacg                                                                                 >  1:52922/1‑251 (MQ=255)                                                                                                                                                                            tgtgGCTGGGGTACTAGGATTCGAACCTCGGAATGGCGGAATCAGAATCCGGTGACTTACCGCTGGGCGATACCCCAACTGGGTTCACTTACAAGGGAAGCGTCTTGAATAAATTGGCTGGGGTACGAGGATTCGAACCTCGGAATGCCGGAATCAGAATCCGGTGCCTTACCGCTTGGCg                                                                                                                                                      <  1:433588/181‑1 (MQ=37)                                                                                                                                                                                                           aaTGCCGGAATCAGAATCCGGTGCCTTACCGCTTGGCGATACCCCAACTGGGTGCACTTACAAGGTAAGCGTCTTGAATAAATTGGCTGGGGTACGAGGATTCGAACCTCGGAATGCCGGAATCAGAATCCGGTGCCTTACCGCTTGGCGATACCCCAACAAATTGGCTTTGAATTTGCCGAACATATTAGATACATTCAGAATTTGGTGGCTACGACGGGATACGAACCTGTGACCCCATCCTTATgggt                                                 >  1:263916/1‑248 (MQ=255)                                                                                                                                                                                                                        gAATCCGGTGCCTTACCGCTTGGCGATACCCCAACTGGGTGCACTTACAAGGTAAGCGTCTTGAATAAATTGGCTGGGGTACGAGGATTCGAACCTCGGAATGCCGGAATCAGAATCCGGTGCCTTACCGCTTGGCGATACCCCAACAAATTGGTTTTGAATTTGCCGAACATATTCGATACATTCAGAATTTGGTGGCTACGACGGGATTCGAACCTGTGACCCCATCATTATGAGTGAtgt                                            <  1:316557/243‑1 (MQ=255)                                                                                                                                                                                                                                                     cccAACTGGGTGCACTTACAAGGTAAGCGTCTTGAATAAATTGGCTGGGGTACGAGGATTCGAACCTCGGAATGCCGGAATCAGAATCCGGTGCCTTACCGCTTGGCGATACACCAACAAATTgg                                                                                                                                     <  1:376057/125‑1 (MQ=255)                                                                                                                                                                                                                                                       cgaCTGGGTACACTTACAAGGTAAGCGTCTTGATTAAAGTGGCTGGGGTACGAGGATTCGATCCTCGGAATGCCTGAATCAGAATCCGGTTCCTTACCGCTTGGCGATTCCCCAACAAATTGGTTTTGAATTTGCCGAACATATTCGATACATTCAGAATTTGGTGGCTACGACGGGATTCGAACCTGTTACCCCATCATTATGAGTGATGTGCTCTAACCAACTGAGCTACGTATCCAGATTGTttcttc     <  2:151375/249‑1 (MQ=38)                                                                                                                                                                                                                                                          cTGGGTGCACTTACAAGGTAAGCGTCTTGAATAAATTGGCTGGGGTACGAGGATTCGAACCTCGGAATGCCGGAATCAGAATCCGGTGCCTTACCGCTTGGCGATACCCCAACAAATTGGTTTTGAATTTGCCGAACATATTCGATACATTCAGAATTTGGTGGCTACGACGGGATTCGAACCTGTGACCCCATCATTATGAGTGATGTGCTCTAACCAACTGAGCTACGTAGCCAGATTGTTTCTTCGAt  >  1:400776/1‑251 (MQ=255)                                                                                                                                                                                                                                                          |                                                                                                                                                                                                                                                           AATATGCGTTAGGGTTGTAGCCTTACAACATTGCCGGATGCGTGCCAACCGTAGGTCGGATAAGACGCGGCAGCGTCGCATCCGACATTGAAGGATAAGACGTGTCAACATCGCATTCGACATTGAATGAACGCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCTTTTTTAATGTGGCTGGGGTACGAGGATTCGAACCTCGGAATGCCGGAATCAGAATCCGGTGCCTTACCGCTTGGCGATACCCCAACTGGGTGCACTTACAAGGTAAGCGTCTTGAATAAATTGGCTGGGGTACGAGGATTCGAACCTCGGAATGCCGGAATCAGAATCCGGTGCCTTACCGCTTGGCGATACCCCAACAAATTGGTTTTGAATTTGCCGAACATATTCGATACATTCAGAATTTGGTGGCTACGACGGGATTCGAACCTGTGACCCCATCATTATGAGTGATGTGCTCTAACCAACTGAGCTACGTAGCCAGATTGTTTCTTCGAT  >  NC_000913/696257‑696756

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.