New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	315229 =	NA (NA)	4 (0.110) +T	3/486	3.8	12.6%	noncoding (1/1255 nt)	IS3	repeat region
	?	NC_000913	3429986 =	28 (0.770)					coding (38/258 nt)	yrdB	DUF1488 domain‑containing protein YrdB
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GAAACTGAGCGCCAATGGTTATATTCGGGCTTCTGGCTGGAAAAAATCGCCGGATATTGAGGATTATCAGGAACGCCCGGCGAATGGCTGGGATATTCGTGCTGAGGGCTATTTACCCGCCTGGCCGCAGCTTGGCGCAAGCCTGATGTATGAACAGTATTATGGCGATGAAGTCGGGCTGTTTGGTAAAGATAAGCGCCAGAAAGACCCGCATGCTATTTCTGCCGAGGTGACCTATACGCCAGTGCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACA‑TGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAGTGAAGCCCTGAAGCTTGCTGAACGCATCGGTGTTACTGCCGCAGCCCGTGAACTCAGCCTGTATGAATCACAACTCTACAACTGGCGCAGTAAACAGCAAAATCAGCAGACGTCTTCTG  >  NC_000913/314980‑315471                                                                                                                                                                                                                                                          |                                                                                                                                                                                                                                                    gAAACTGAGCGCCAATGGTTATATTCGGGCTTCTGGCTGGAAAAAATCGCCGGATATTGAGGATTATCAGGAACGCCCGGCGAATGGCTGGGATATTCGTGCTGAGGGCTATTTACCCGCCTGGCCGCAGCTTGGCGCAAGCCTGATGTATGAACAGTATTATGGCGATGAAGTCGGGCTGTTTGGTAAAGATAAGCGCCAGAAAGACCCGCATGCTATTTCTGCCGAGGTGACCTATACGCCAGTGCctc                                                                                                                                                                                                                                                    >  1:310949/1‑251 (MQ=255)            ccAATGGTTATATTCGGGTTTCGGGCTGGAAAAAATCGCCGGATATTGAGGATTATCAGGAACGCCCGGCGAATGGCTGGGATATTCGTGCTGAGGGCTATTTACCCGCCTGGCCGCAGCTTGGCGCAAGCCTGATGTATGAACAGTATTATGGCGATGAAGTCGGGCTGTTTGGTAAAGATAAGCGCCAGAAAGACCCGCATGCTATTTCTGCCGAGGTGACCTATACGCCAGTGCCTCTTACCCAGCaa                                                                                                                                                                                                                                         <  1:259544/251‑1 (MQ=255)                             gCTTCTGGCTGGAAAAAATCGCCGGATATTGAGGATTATCAGGAACGCCCGGCGAATGGCTGGGATATTCGTGCTGAGGGCTATTTACCCGCCTGGCCGCAGCTTGGCGCAAGCCTGATGTATGAACAGTATTATGGCGATGAAGTCGGGCTGTTTGGTAAAGATAAGCGACAGAAAGACCCGCATGCTATTTCTGCCGAGGTGACCTATACGCCAGTGCCTCTTACCCAGCAATAGTGGACACGCGGCt                                                                                                                                                                                                                         >  1:178648/1‑250 (MQ=255)                                    gctggAAAAAATCGCCGGATATTGAGGATTATCAGGAACGCCCGGCGAATGGCTGGGATATTCGTGCTGAGGGCTATTTACCCGCCTGGCCGCAGCTTGGCGCAAGCCTGATGTATGAACAGTATTATGGCGATGAAGTCGGGCTGTTTGGTAAAGATAAGCGCCAGAAAGAACCGCATGCTATTTCTTCCGAGGTAACCTATACGCCCGTGACTCTTACCCAGCACTAGTggccaagcagctcatg                                                                                                                                                                                                                     >  2:349758/1‑233 (MQ=255)                                              aTCGCCGGATATTGAGGATTATCAGGAACGCCCGGCGAATGGCTGGGATATTCGTGCTGAGGGCTATTTTCCCGCCTGGCCGCAGCTTGGCGCAAGCCTGATGTATGAACAGTATTATGGCGATGAAGTCGGGCTGTTTGGTAAAGATAAGCGCCAGAAAGACCCGCATGCTATTTCTGCCGAGGTGACCTATACGCCAGTGCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACtctc                                                                                                                                                                                                         >  1:417121/1‑249 (MQ=255)                                                               aTTATCAGGAACGCCCGGCGAATGGCTGGGATATTCGTGCTGAGGGCTATTTACCCGCCTGGCCGCAGCTTGGCGCAAGCCTGATGTATGAACAGTATTATGGCGATGAAGTCGGGCTGTTTGGTAAAGATAAGCGCCAGAAAGACCCGCATGCTATTTCTGCCGAGGTGACCTATACGCCAGTGCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACA‑t                                                                                                                                                                                     <  1:144070/251‑1 (MQ=255)                                                                 tattctgatcGCCCGGCGAATGGTTGGGATATCCGTGCTGAGTGCTATTTACCCGCCTGGCCGCAGCTTGGCGCAAGCCTGATGTATGAACAGTATTATGGCGATGAAGTCGGGCTGTTTGGTAAAGATAAGCGCCAGAAAGACCCGCATGCTATTTCTGCCGAGGTGACCTATACGCCAGTGCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACA‑ta                                                                                                                                                                                    <  2:310949/241‑2 (MQ=255)                                                                     aGGAACGCCCGGCGAATGGCTGGGATATTCGTGCTGAGGGCTATTTCCCCGCCTTGCCGCAGCTTGGCGCAAGCCTGATGTATGAACAGTATTATGGCGATGAAGTCGGGCTGTTTGGTAAAGATAAGCGCCAGAAAGACCCGCATGCTATTTCTGCCGAGGTGACCTATACGCCAGTGCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACA‑TGACaaa                                                                                                                                                                               <  1:2919/251‑1 (MQ=255)                                                                      ggAACGACCGGCGAATGGCTGGGATATTCGTGCTGAGGGCTATTTACCCGCCTGGCCGCAGCTGGGCGCAAGCCTGATGTATGAACAGTATTATGGCGATGAAGTCGGGCTGTTTGGTAAAGATAAGCGCCAGAAAGACCCGCATGCTATTTCTGCCGAGGTGACCTATACGACAGAGCCTCTTACCCAGCAATAGTGGCCACGCTGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCAAA‑TGACaaa                                                                                                                                                                               >  2:79828/1‑250 (MQ=39)                                                                           gCCCGGCGAATGGCTGGGATATTCGTGCTGAGGGCTATTTCCCCGCCTGGCCGCAGCTTGGCGCAAGCCTGATGTATGAACAGTATTATGGCGATGAAGTCGGGCTGTTTGGTAAAGATAAGCGCCAGAAAGACCCGCATGCTATTTCTGCCGAGGTGACCTATACGCCAGTGCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACA‑TGACAAAAACAGt                                                                                                                                                                         <  1:254360/251‑1 (MQ=255)                                                                                           ggATATTCGGGTTGAGGGCTATTTACCCGCCTGGCCGCAGCTTGGCGCAAGCCTGATGTATGAACAGTATTATGGCGATGAAGTCGGGCTGTTTGGTAAAGATAAGCGCCAGAAAGACCCGCATGCTATTTCTGCCGAGGTGACCTATACGCCAGTGCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACA‑TGACAAAAACAGTATCAACCAGTaaaaaa                                                                                                                                                         <  1:253369/251‑1 (MQ=255)                                                                                                       tGAGGGCTATTTACCCGCCTGGCCGCAGCTTGGCGCAAGCCTGATGTATGAACAGTATTATGGCGATGAAGTCGGGCTGTTTGGTAAAGATAAGCGCCAGAAAGACCCGCATGCTATTTCTGCCGAGGTGACCTATACGCCAGTGCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACA‑TGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAAc                                                                                                                                               >  1:398096/1‑249 (MQ=255)                                                                                                       tGAGGGCTATTTACCCGCCTGGCCGCAGCTTGACGCAAGCCTGATGTATGAAAAGTATTATGACAATGAAGGCGGGCTGTTTGGTAAAAATAAGCGACAGAAATACCCGAATGCTATTTCAGCAGCGGGGACCTATACGCCAGTGCCTCATACACAGCAACAGTGGGCATGCGGCGAAGGGATTCAAATCGCAATCAGAGGTGACTCACA‑GTAAAAAAACAGTAACACCCAATAAAAAACCCCGTAAAcc                                                                                                                                              >  2:344621/1‑249 (MQ=255)                                                                                                         aGGGCTATTTACCCGCCTGGCCGCAGCTTGGCGCAAGCCTGATGTATGAACAGTATTATGGCGATGAAGTCGGGCTGTTTGGTAAAGATAAGCGCCAGAAAGACCCGCATGCTATTTCTGCCGAGGTGACCTATACGCCAGTGCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACA‑TGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCa                                                                                                                                           <  1:109755/251‑1 (MQ=255)                                                                                                            gCTATTTACCCGCCTGGCCGCAGCTTGGCGCAAGCCTGATGTATGAACAGTATTATGGCGATGAAGTCGGGCTGTTTGGTAAAGATAAGCGCCAGAAAGACCCGCATGCTATTTCTGCCGAGGTGACCTATACGCCAGTGCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACA‑TGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTc                                                                                                                                        >  1:315452/1‑251 (MQ=255)                                                                                                              tATTTACCCGCCTGGCCGCAGCTTGGCGCAAGCCTGATGTATGAACAGTATTATGGCGATGAAGTCGGGCTGTTTGGTAAAGATAAGCGCCAGAAAGACCCGCATGCTATTTCTGCCGAGGTGACCTATACGCCAGTGCCTCTTACCCAGCAATAGTGGACACGCGCCTAAGTGAGTAAACTCTCCATCAGAGGTGACTCACA‑TGACCAAAACAGAATCAACCAGTAAAAAACCCCGCAAACAACATTCGc                                                                                                                                      >  2:340116/1‑251 (MQ=255)                                                                                                                                        cgcAAGCCTGATGTATGAACAGTATTATGGCGATGAAGTCGGGCTGTTTGGTAAAGATAAGCGCCAGAAAGACCCGCATGCTATTTCTGCCGAGGTGACCTATACGCCAGTGCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGAAAACTCTCAGTCAGAGGTGACTCACA‑TGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAGTGAAACCCTGa                                                                                                              >  1:237151/1‑249 (MQ=255)                                                                                                                                                                   gggCGATGAAGTCGGGCTGTTTGGTAAAGATAAGCGCCCGAAGTAGCCGCTTGTTTTTTCTGCCGATGTGACCGATACTCCTGTGCCTCTTACCCAGCAATAGGTGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACA‑GGACAAAAACAGTATCAACCAGTAAAAGACCCCGTAAACAGCATTCGCCTGAATTTCGCAGTTAAGGCCTGAAGCTGGCTTATCTCATCGGGGTTACTGc                                                                                  <  2:178648/249‑1 (MQ=17)                                                                                                                                                                                        tggaaaaGATAAGCGCCAACAAGACCCGCATGCTATTTCTGCCGAGGTGACCTATACGCCCGTGCCTCTTACCCAGCAATAGTGGACACGCGGCTCAGTGAGTAAACTCTCAGTAAGAGGTGACTC‑CACTGCAAAAAACAGTATCAACCAGAAACCAACCCCGTAAAACGAATTCGACTGAATTTCGCAGTGAAGCCCTGAAGCTTGCTGACCGCATCGGTGTTACTGCCGCAGCCGGTGAACTCAGcc                                                              >  2:406918/5‑249 (MQ=17)                                                                                                                                                                                            aaaGATAAGCGCCAGAACGACCCGCATGCTATTTCTGCCGAGGTGACCTATCCGCCAGTGCCTCTTACCCAGCAATAGCGGAACCGCGGCTACGTGAGTAAACTCTCAGTCAGAAGGGACTCACA‑TGACAACAACAGTATCAACCAGTAAAAAACCCCGTAACCAGCATTCGCCTGAATTACGCAGCGAAGCCCTGAAGCTTGCTGAACGCAGCGGTGTTACTGCCGCCGCCCGTACACCCAGCCTGTATg                                                        >  2:48399/1‑251 (MQ=17)                                                                                                                                                                                                             aGACCCGCATGCTATTTCTGCCGAGGTGACCTATACGCCAGTGCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACA‑TGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAGTGAAGCCCTGAAGCTTGCTGAACGCATCGGTGTTACTGCCGCAGCCCGTGAACTCAGCCTGTATGAATCACAACTCTACAAc                                       >  1:283711/1‑251 (MQ=255)                                                                                                                                                                                                                  cGCATGCTATTTCTGCCGAGGTGACCTATCCGCCAGTGCCGCTTTCCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACA‑TGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAGTGAAGCCCTGAAGCTTGCTGAACGCATCGGTGTTACTGCCGCAGCCCGTGAACTCAGCCTGTATGAATCACAACTCTACAACTGgcg                                  <  2:398096/251‑1 (MQ=255)                                                                                                                                                                                                                         tATTTCTGCCGAGGAGACCTATACGCCAGTGCTTCTTACCCAGCAATAGTGGCCACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACACACA‑TGACAAAGACAGTATCAAACAGTAAAAAACCCCGTAAACAGCATTCGCATGAATTTCGCAGTGAAGCCCTGAAGCTTGATGAACGCATCGGTTTTACTGCCGCCGCCCGTGCACTCAGCCAGTATAAATCACAACTCAAAAACAGGCGCAGTaa                            >  2:336574/1‑250 (MQ=14)                                                                                                                                                                                                                           tttCTGCCGAGGTGACCTATTCGCCAGGGCCTCTTACCCAGCAATAGTGGACACTCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACA‑TGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAGTGAAGCCCTGAAGCTTGCTGAACGCATCGGTGTTACTGCCGCAGCCCGTGAACTCAGCCTGTATGAATCACAACTCTACAACTGGCGCAGTAAAc                          <  1:336574/250‑1 (MQ=255)                                                                                                                                                                                                                                  cGAGGTGACCTATACGCCAGTGCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACA‑TGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAGTGAAGCCCTGAAGCTTGCTGAACGCATCGGTGTTACTGCCGCAGCCCGTGAACTCAGCCTGTATGAATCACAACTCTACAACTGGCGCAGTAAACAGCAAAAt                  >  1:12517/1‑251 (MQ=40)                                                                                                                                                                                                                                    aGGTGACCTATACGCCAGTGCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGGCAGAGGTGACTCACA‑TGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAGTGAAGCCCTGAAGCTTGCTGAACGCATCGGTGTTACTGCCGCAGCCCGTGAACTCAGCCTGTATGAATCACAACTCTACAACTGGCGCAGTAAACAGCAAAATca                <  1:256345/251‑1 (MQ=255)                                                                                                                                                                                                                                     ggTGACCTATACGCCAGTGCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACA‑TGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAGTGAAGCCCTGAAGCTTGCTGAACGCATCGGTGTTACTGCCGCAGCCCGTGAACTCAGCCTGTATGAATCACAACTCTACAACTGGCGCAGTAAACAGCAAAATcag               <  1:127523/251‑1 (MQ=39)                                                                                                                                                                                                                                                   cAGTGCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACA‑TGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAGTGAAGCCCTGAAGCTTGCTGAACGCATCGGTGTTACTGCCGCAGCCCGTGAACTCAGCCTGTATGAATCACAACTCTACAACTGGCGCAGTAAACAGCAAAATCAGCAGACGTCTTCTg  >  1:401564/1‑250 (MQ=32)                                                                                                                                                                                                                                                          |                                                                                                                                                                                                                                                    GAAACTGAGCGCCAATGGTTATATTCGGGCTTCTGGCTGGAAAAAATCGCCGGATATTGAGGATTATCAGGAACGCCCGGCGAATGGCTGGGATATTCGTGCTGAGGGCTATTTACCCGCCTGGCCGCAGCTTGGCGCAAGCCTGATGTATGAACAGTATTATGGCGATGAAGTCGGGCTGTTTGGTAAAGATAAGCGCCAGAAAGACCCGCATGCTATTTCTGCCGAGGTGACCTATACGCCAGTGCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACA‑TGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAGTGAAGCCCTGAAGCTTGCTGAACGCATCGGTGTTACTGCCGCAGCCCGTGAACTCAGCCTGTATGAATCACAACTCTACAACTGGCGCAGTAAACAGCAAAATCAGCAGACGTCTTCTG  >  NC_000913/314980‑315471

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.