mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.39.0
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 377,474 | 0 | C | T | 73.9% | 19.1 / 10.7 | 23 | intergenic (+163/+61) | yaiL/frmB | DUF2058 domain‑containing protein YaiL/S‑formylglutathione hydrolase FrmB |
| * | NC_000913 | 377,450 | 0 | T | A | 65.0% | 3.9 / 16.4 | 20 | intergenic (+139/+85) | yaiL/frmB | DUF2058 domain‑containing protein YaiL/S‑formylglutathione hydrolase FrmB |
| * | NC_000913 | 4,208,132 | 0 | G | A | 64.8% | 24.5 / 51.1 | 54 | intergenic (‑600/‑15) | purH/rrsE | bifunctional AICAR transformylase/IMP cyclohydrolase/16S ribosomal RNA |
| * | NC_000913 | 377,431 | 1 | . | A | 50.0% | 5.8 / 37.2 | 16 | intergenic (+120/+104) | yaiL/frmB | DUF2058 domain‑containing protein YaiL/S‑formylglutathione hydrolase FrmB |
| * | NC_000913 | 377,432 | 0 | C | G | 50.0% | 1.4 / 28.3 | 16 | intergenic (+121/+103) | yaiL/frmB | DUF2058 domain‑containing protein YaiL/S‑formylglutathione hydrolase FrmB |
| * | NC_000913 | 4,209,791 | 0 | G | A | 32.1% | 97.2 / 94.4 | 113 | noncoding (18/76 nt) | gltV | tRNA‑Glu |
| * | NC_000913 | 3,875,532 | 0 | A | T | 31.6% | 46.6 / 15.7 | 39 | H32L (CAT→CTT) | yidX | putative lipoprotein YidX |
| * | NC_000913 | 2,878,947 | 0 | C | T | 28.3% | 79.8 / 12.9 | 48 | E276K (GAA→AAA) | cas1 | multifunctional nuclease Cas1 |
| * | NC_000913 | 4,604,350 | 0 | C | T | 26.8% | 71.3 / 11.7 | 41 | S64F (TCT→TTT) | bglJ | DNA‑binding transcriptional regulator BglJ |
| * | NC_000913 | 3,556,200 | 0 | G | A | 25.0% | 78.6 / 12.9 | 48 | S217F (TCC→TTC) | rtcA | RNA 3'‑terminal phosphate cyclase |
| * | NC_000913 | 3,848,333 | 0 | T | A | 24.0% | 103.5 / 10.5 | 50 | M98L (ATG→TTG) | uhpC | inner membrane protein sensing glucose‑6‑phosphate |
| * | NC_000913 | 580,119 | 0 | A | G | 21.9% | 56.2 / 11.7 | 32 | intergenic (+33/+132) | ybcW/ylcI | uncharacterized protein YbcW/DUF3950 domain‑containing protein YlcI |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3137472 | 72 (1.380) | 3 (0.060) | 3/478 | 5.5 | 4.5% | coding (1051/1860 nt) | gss | fused glutathionylspermidine amidase/glutathionylspermidine synthetase |
| ? | NC_000913 | 3137746 = | 57 (1.130) | coding (777/1860 nt) | gss | fused glutathionylspermidine amidase/glutathionylspermidine synthetase | |||||
| * | ? | NC_000913 | 3583428 = | NA (NA) | 4 (0.080) | 3/492 | 5.6 | 5.8% | noncoding (1/768 nt) | IS1 | repeat region |
| ? | NC_000913 | = 3729457 | 65 (1.250) | noncoding (89/160 nt) coding (1309/1323 nt) |
xylZ xylA |
small RNA XylZ xylose isomerase |
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