mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.39.0
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,304,537 | 0 | A | G | 66.7% | 5.4 / 10.4 | 18 | intergenic (+144/+571) | eco/mqo | serine protease inhibitor ecotin/malate:quinone oxidoreductase |
| * | NC_000913 | 2,304,540 | 0 | C | T | 66.7% | 5.4 / 10.4 | 18 | intergenic (+147/+568) | eco/mqo | serine protease inhibitor ecotin/malate:quinone oxidoreductase |
| * | NC_000913 | 2,304,549 | 0 | C | T | 61.1% | ‑4.5 / 15.2 | 18 | intergenic (+156/+559) | eco/mqo | serine protease inhibitor ecotin/malate:quinone oxidoreductase |
| * | NC_000913 | 4,040,623 | 0 | G | A | 60.9% | 17.6 / 73.4 | 64 | noncoding (107/120 nt) | rrfA | 5S ribosomal RNA |
| * | NC_000913 | 2,304,567 | 0 | C | T | 56.2% | ‑4.8 / 13.3 | 16 | intergenic (+174/+541) | eco/mqo | serine protease inhibitor ecotin/malate:quinone oxidoreductase |
| * | NC_000913 | 4,296,268 | 0 | T | C | 47.8% | ‑3.6 / 24.4 | 24 | intergenic (+474/+168) | gltP/yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| * | NC_000913 | 2,304,575 | 0 | G | A | 42.9% | 4.5 / 13.8 | 16 | intergenic (+182/+533) | eco/mqo | serine protease inhibitor ecotin/malate:quinone oxidoreductase |
| * | NC_000913 | 377,407 | 0 | C | T | 33.3% | 42.8 / 38.8 | 45 | intergenic (+96/+128) | yaiL/frmB | DUF2058 domain‑containing protein YaiL/S‑formylglutathione hydrolase FrmB |
| * | NC_000913 | 377,402 | 0 | G | A | 32.6% | 53.3 / 31.0 | 44 | intergenic (+91/+133) | yaiL/frmB | DUF2058 domain‑containing protein YaiL/S‑formylglutathione hydrolase FrmB |
| * | NC_000913 | 3,813,272 | 0 | C | T | 30.9% | 47.5 / 15.3 | 42 | S181L (TCG→TTG) | dfp | fused 4'‑phosphopantothenoylcysteine decarboxylase and phosphopantothenoylcysteine synthetase |
| * | NC_000913 | 354,288 | 0 | T | G | 30.8% | 119.9 / 13.3 | 66 | V528G (GTG→GGG) | prpE | propionyl‑CoA synthetase |
| * | NC_000913 | 377,425 | 0 | C | T | 27.0% | 61.0 / 17.8 | 37 | intergenic (+114/+110) | yaiL/frmB | DUF2058 domain‑containing protein YaiL/S‑formylglutathione hydrolase FrmB |
| * | NC_000913 | 377,423 | 0 | G | T | 25.6% | 52.3 / 22.6 | 39 | intergenic (+112/+112) | yaiL/frmB | DUF2058 domain‑containing protein YaiL/S‑formylglutathione hydrolase FrmB |
| * | NC_000913 | 4,296,060 | 0 | C | T | 20.9% | 117.0 / 28.7 | 68 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| * | NC_000913 | 377,431 | 1 | . | T | 20.6% | 87.4 / 27.7 | 34 | intergenic (+120/+104) | yaiL/frmB | DUF2058 domain‑containing protein YaiL/S‑formylglutathione hydrolase FrmB |
| * | NC_000913 | 377,432 | 0 | C | G | 20.6% | 80.8 / 17.7 | 34 | intergenic (+121/+103) | yaiL/frmB | DUF2058 domain‑containing protein YaiL/S‑formylglutathione hydrolase FrmB |
| * | NC_000913 | 4,295,961 | 0 | C | T | 20.3% | 133.6 / 21.4 | 64 | intergenic (+167/+475) | gltP/yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| * | NC_000913 | 375,621 | 0 | A | G | 20.0% | 187.0 / 12.1 | 91 | I55V (ATA→GTA) | mhpT | 3‑hydroxyphenylpropionate/3‑ hydroxycinnamate:H(+) symporter |