mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.39.0
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 240 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 579,717 | 0 | A | C | 78.4% | 101.7 / 16.7 | 52 | intergenic (‑123/‑163) | ybcV/ybcW | DUF1398 domain‑containing protein YbcV/uncharacterized protein YbcW |
| * | NC_000913 | 579,671 | 0 | T | C | 75.5% | 95.3 / 28.5 | 54 | intergenic (‑77/‑209) | ybcV/ybcW | DUF1398 domain‑containing protein YbcV/uncharacterized protein YbcW |
| * | NC_000913 | 579,651 | 0 | C | T | 72.4% | 84.4 / 38.6 | 59 | intergenic (‑57/‑229) | ybcV/ybcW | DUF1398 domain‑containing protein YbcV/uncharacterized protein YbcW |
| * | NC_000913 | 579,004 | 0 | C | T | 72.0% | 67.7 / 38.4 | 51 | intergenic (‑111/+180) | borD/ybcV | prophage lipoprotein BorD/DUF1398 domain‑containing protein YbcV |
| * | NC_000913 | 579,540 | 0 | T | C | 72.0% | 76.7 / 30.2 | 50 | N19D (AAC→GAC) | ybcV | DUF1398 domain‑containing protein YbcV |
| * | NC_000913 | 1,429,069 | 0 | T | A | 71.4% | 68.7 / 30.9 | 52 | G7G (GGT→GGA) | stfR | putative prophage side tail fiber protein StfR |
| * | NC_000913 | 1,429,114 | 0 | C | T | 70.5% | 85.9 / 40.2 | 62 | I22I (ATC→ATT) | stfR | putative prophage side tail fiber protein StfR |
| * | NC_000913 | 1,429,072 | 0 | A | C | 70.0% | 62.0 / 29.0 | 52 | V8V (GTA→GTC) | stfR | putative prophage side tail fiber protein StfR |
| * | NC_000913 | 580,302 | 0 | C | T | 69.7% | 72.3 / 44.8 | 67 | R48R (AGG→AGA) | ylcI | DUF3950 domain‑containing protein YlcI |
| * | NC_000913 | 579,385 | 0 | A | G | 69.1% | 59.8 / 46.0 | 57 | N70N (AAT→AAC) | ybcV | DUF1398 domain‑containing protein YbcV |
| * | NC_000913 | 580,115 | 0 | C | T | 69.0% | 77.0 / 59.9 | 71 | intergenic (+29/+136) | ybcW/ylcI | uncharacterized protein YbcW/DUF3950 domain‑containing protein YlcI |
| * | NC_000913 | 579,457 | 0 | A | G | 68.5% | 68.0 / 38.5 | 56 | I46I (ATT→ATC) | ybcV | DUF1398 domain‑containing protein YbcV |
| * | NC_000913 | 1,429,128 | 0 | A | G | 68.2% | 81.9 / 48.0 | 63 | K27R (AAA→AGA) | stfR | putative prophage side tail fiber protein StfR |
| * | NC_000913 | 580,020 | 0 | G | A | 68.0% | 88.9 / 65.3 | 78 | R47R (AGG→AGA) | ybcW | uncharacterized protein YbcW |
| * | NC_000913 | 579,502 | 0 | A | G | 67.9% | 63.9 / 43.3 | 56 | N31N (AAT→AAC) | ybcV | DUF1398 domain‑containing protein YbcV |
| * | NC_000913 | 1,429,111 | 0 | A | C | 67.7% | 91.4 / 36.8 | 62 | T21T (ACA→ACC) | stfR | putative prophage side tail fiber protein StfR |
| * | NC_000913 | 580,120 | 0 | C | T | 67.7% | 77.6 / 58.8 | 69 | intergenic (+34/+131) | ybcW/ylcI | uncharacterized protein YbcW/DUF3950 domain‑containing protein YlcI |
| * | NC_000913 | 1,429,164 | 0 | C | G | 67.2% | 83.1 / 63.0 | 62 | A39G (GCC→GGC) | stfR | putative prophage side tail fiber protein StfR |
| * | NC_000913 | 1,429,207 | 0 | T | G | 67.2% | 86.4 / 35.4 | 61 | V53V (GTT→GTG) | stfR | putative prophage side tail fiber protein StfR |
| * | NC_000913 | 1,429,160 | 0 | C | G | 67.2% | 104.6 / 51.5 | 64 | L38V (CTG→GTG) | stfR | putative prophage side tail fiber protein StfR |