Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,429,114	0	C	T	70.5%	85.9 / 40.2	62	I22I (ATC→ATT)	stfR	putative prophage side tail fiber protein StfR
Reads supporting (aligned to +/- strand):  ref base C (11/7);  new base T (22/21);  total (34/28)
Fisher's exact test for biased strand distribution p-value = 5.78e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.36e-01
Rejected as consensus: Frequency below/above cutoff threshold.

GTTTAACCCGACCGAATCCGTGGCCATTGATATTGCTTATGAAGGCCCCGGCAGTGGCGACTGGCGCACTGACGGTTTCATCGTGGGTGTCGGTTATAAGTTCTGATTAGCCAGGTAACACAGTGTTATGACAGCCCGCCGGTTCAGGCGGGCTTTTTTGTGGGGTGAATATGGCAGTAAAGATTTCAGGTGTACTGAAAGACGGCACAGGAAAACCGGTACAGAACTGCACAATCCAGCTGAAAGCAAAACGTAACAGCACCACGGTGGTGGTGAACACGCTGGCCTCAGAAAATCCGGATGAAGCCGGGCGTTACAGCATGGACGTTGAGTACGGTCAGTACAGCGTTATTCTGTTGGTGGAAGGATTCCCGCCGTCACATGCCGGGACCATTACCGTGTATGAAGATTCTCAACCCGGTACGCTGAATGATTTTCTCGGTGCCATGACGGAGGATGATGCCCGTCCGGAGGCACTGCGCCGTT  >  NC_000913/1428879‑1429364                                                                                                                                                                                                                                            |                                                                                                                                                                                                                                                           gTTTAACCCGACCGAATCCGTGGCCATTGATATTGCTTATGAAGGCCCCGGCAGTGGCGACTGGCGCACTGACGGTTTCATCGTGGGTGTCGGTTATAAGTTCTGATTAGCCAGGTAACACAGTGTTATGACAGCCCGCCGGTTCAGGCGGGCTTTTTTGTGGGGTGAATATGGCAGTAAAGATTTCAGGTGTACTGAAAGACGGCACAGGAAAACCGGTACAGAACTGCACAATCCAGCTGAAAGCaaaa                                                                                                                                                                                                                                             <  1:68746/251‑1 (MQ=255)     aatccggcagcgtccgtcgttgttGATATTGCTTATGAAGGCTCCGGCAGTGGCTACTGGCGTACTGACGGATTCATCGTTGGGGTCGGTTATAAATTCTGATTAGCCAGGTAACACAGTGTTATGACAGCCCGCCGGAACCGGTGGGCTTTTTTGTGGGGTGAATATGGCAGTAAAGATTTCAGGAGTCCTGAAAGACGGCACAGGAAAACCGGTATAGAACTGCACAATTCAGCTGAAAGCCAGACGTa                                                                                                                                                                                                                                         <  1:253312/229‑1 (MQ=255)          ggcagcgtccgtcgttgttGATATTGCTTATGAAGGCTCCGGCAGTGGCGACTGGCGTGCTGACGGATTCATCGTTGGGGTCGGTTATAAATTCTGATTAGCCAGGTAACACAGTGTTATGACAGCCCGCCGGAACCGGTGGGCTTTTTTGTGGGGTGAATATGGCAGTAAAGATTTCAGGAGTCCTGAAAGACGGCACAGGAAAACCGGTACAGAACTGCACCATTCAGCTGAAAGCCAGACGTAACAGc                                                                                                                                                                                                                                    <  1:232966/234‑1 (MQ=255)            cagcgtccgtcgttgtggATATTGCTTATGAAGGCTCCGGCAGTGGCTACTGGCGTACTGACGGATTCATCGTTGGGGTCGTTTATAAATTCTGATTAGCCAGGTAACACAGGGTTATGACAGCCCGCCGTAACCGGTGGGCTTTTTTGTGGGGTGAATATGGCAGTAAAGATTTCAGGAGTCCTGAAAGACGGCACAGGAAAACCGGTACAGAACTGCCCCATTCAGCTGAAAGCCAGACGTAACAGcac                                                                                                                                                                                                                                  <  1:133569/234‑1 (MQ=255)                  ccGTGGCCATTGATATTGCTTATGAAGGCCCCGGCAGTGGCGACTGGCGCACTGACGGTTTCATCGTGGGTGTCGGTTATAAGTTCTGATTAGCCAGGTAACACAGTGTTATGACAGCCCGCCGGTTCAGGCGGGCTTTTTTGTGGGGTGAATATGGCAGTAAAGATTTCAGGTGTACTGAAAGACGGCACAGGAAAACCGGTACAGAACTGCACAATCCAGCTGAAAGCAAAACGTAACAGCACCACgg                                                                                                                                                                                                                             <  1:96628/250‑1 (MQ=255)                           ttGATATTGCTTATGAAGGCTCCGGCAGTGGCGACTGGCGTACTGACGGATTCATCGTTGGGGTCGGTTATAAATTCTGATTAGCCAGGTAACACAGTGTTATGACAGCCCGCCGGAACCGGTGGGCTTTTTTGTGGGGTGAATATGGCAGTAAAGATTTCAGGAGTCCTGAAAGACGGCACAGGAAAACCGGTACAGAACTGCACCATTCAGATGAAAGCCAGACATAACAGCACCACGGTGGGGGTGa                                                                                                                                                                                                                    >  2:336023/1‑250 (MQ=255)                             gATATTGCTTATGAAGGCTCCGGCAGTGGCGACTGGCGTACTGACGGATTCATCGTTGGGGTCGGTTATAAATTCTGATTAGCCAGGTAACACAGTGTTATGACAGCCCGCCGGAACCGGTGGGCTTTTTTGTGGGGTGAATATGGCAGTAAAGATTTCAGGAGTCCTGAAAGACGGCACAGGAAAACCGGTACAGAACTGCACCATTCAGCTGAAAGCCAGACGTAACAGCACCACGGTGGTGGTGAaca                                                                                                                                                                                                                 <  1:448775/251‑1 (MQ=255)                                    cTTATGAAGGCTCCGGCAGTGGCGACTGGCGTACTGACGGATTCATCGTTGGGGTCGGTTATAAATTCTGATTAGCCAGGTAACACAGTGTTATGACAGCCCGCCGGAACCGGTGGGCTTTTTTGTGGGGTGAATATGGCAGTAAAGATTTCAGGGGTCCTGAAAGACGGCACAGGAAAACCGGTACAGAACTGCACCATTCAGCTGAAAGCCAGACGTAACAGCACCACGGAGGTGGTGAACACGGTggg                                                                                                                                                                                                          >  1:51030/1‑250 (MQ=255)                                     ttATGAGGGCCCCGGCAGTGGCGACTGGCGCACTGACGGTTTCATCGTGGGTGTCGGTTATAAGTTCTGATTAGCCAGGTAACACAGTGTTATGACAGCCCGCCGGTTCAGGCGGGCTTTTTTGTGGGGTGAATATGGCAGTAAAGATTTCAGGTGTACTGAAAGACGGCACAGGAAAACCGGTACAGCAATGCCCAATCCAGCTGAAAGCAAAACGTAACAGCACCACGGTGGTGGTGAACAAGCTGGcc                                                                                                                                                                                                         >  2:167829/1‑251 (MQ=255)                                      tATGAAGGCTCCGGCAGTGGCTACTGGCGTACTGACGGATTCAGCGTTGGGGTCGGTTATAAATTCTGATTAGCCAGGTAACACAGTGTTATGACAGCCCGCCGGAACCGGTGGGCTTTTTTGTGGGGTGAATATGGCAGTAAAGATTTCAGGAGTCCTGAAAGACGGCACAGGAAAACCGGTACAGAACTGCACCATTCAGCTGAAAGCCAGACGTAACAGCACCACGGTGGTGGTGAACACGGTggg                                                                                                                                                                                                          <  2:369488/249‑2 (MQ=255)                                       agtatgtcccgggCAGTGGCGACTGGCGCATTGACGGTTTCTGCGTGGGTTTCGGTTATAAGTTCTGATTTGCCTGGTAACACAGTGTTATGACAGCCCGCCGGTTCAGGCGGGCTTTTTTGTGGGGTGAATATGGCAGTAAAGATTTCAGGTGTACTGAAAGACGGCACAGGAAAACCGGTACAGAACTGCACAATCCAGCTGAAAGCAAAACGTAACAGCACCACGGTGGTGGTGAACACGCTGGCCt                                                                                                                                                                                                        <  2:354781/239‑1 (MQ=255)                                          aaGGCTCCGGCAGTGGCGACTGGCGTACTGACGGATTCATCGTTGGGGTCGGTTATAAATTCTGATTAGCCAGGTAACACAGTGTTATGACAGCCCGCCGGAACCGGTGGGCTTTTTTGTGGGGTGAATATGGCAGTAAAGATTTCAGGAGTCCTGAAAGACGGCACAGGAAAACCGGTACAGAACTGCACCATTCAGCTGAAAGCCAGACGTAACAGCACCACGGTGGTGGTGAACACGGTGGGCTc                                                                                                                                                                                                       >  2:124966/1‑248 (MQ=255)                                              ctccGGCAGTGGCGACTGGCGTACTGACGGATTCATCGTTGGGGTCGGTTATAAATTCTGATTAGCCAGGTAACACAGTGTTATGACAGCCCGCCGGAACCGGTGGGCTTTTTTGTGGGGTGAATATGGCAGTAAAGATTTCAGGAGTCCTGAAAGACGGCACAGGAAAACCGGTACAGAACTGCACCATTCAGCTGAAAGCCAGACGTAACAGAACCACGGTGGTGGTGAACACGGTGGGCTCAGagact                                                                                                                                                                                                >  2:126145/3‑247 (MQ=255)                                                ccGGCAGTGGCGACTGGCGGACTGACGGATTCATCGTTGGGGTCGGTTATAAATTCTGATTAGCCAGGTAACACAGTGTTATGACAGCCCGCCGGAACCGGTGGGCTTTTTTGTGGGGTGAATATGGCAGTAAAGATTTCAGGAGTCCTGAAAGACGGCACAGGAAAACCGGTACAGAACTGCACCATTCAGCTTAAAGCCAGACGTAACAGCACCACGGTGGTGGTGAACACGGTGGGCTCAGAGAATcc                                                                                                                                                                                              <  1:292426/251‑1 (MQ=255)                                                    cAGTGGCGACTGGCGCACTGACGGTTTCATCGTGGGTGTCGGTTATAAGTTCTGAGTAGCCAGGTAACACAGTTTTATGACAGCCCGCCGGTTCAGGCGGGCTTTTTTGTGGGGTGAATATGGCAGTAAAGATTTCAGGTGTACTGAAAGACGGCACAGGAAAACCGGTACAGAACTGCACAATCCAGCTGAAAGCAAAACGTAACAGCGCCACGGTGGTGGTGAACACGCTGGCCTCAGAAAATCCGGAt                                                                                                                                                                                          <  1:286365/251‑1 (MQ=255)                                                       tGGCGACTGGCGTACTGACGGATTCATCGTTGGGGTCGGTTATAAATTCTGATTAGCCAGGTAACACAGTGTTATGACAGCCCGCCGGAACCGGTGGGCTTTTTTGTGGGGTGAATATGGCAGTAAAGATTTCAGGAGTCCTGAAAGACGGCACAGGAAAACCGGTACAGAACTGCACCATTCAGCTGAAAGCCAGACGTAACAGCACCACGGTGGTGGTGAACACGGTGGGCTCAGAGAATCCGGATGa                                                                                                                                                                                        >  1:114762/1‑250 (MQ=255)                                                              tGGCGCACTGACGGTTTAATCGTGGGTGCCGGTTATAAGTTCTGATTAGCCAGGTAACACAGTGTTATGCCAGCCCGCCGGTTCAGGCGGGCTTTTTTGTGGGGTGAATATGGCAGTAAAGATTTCAGGGGTACTGAAAGACGGCCCAGGAAAACCGGTACCGAACTGCACAATCCAGCTGAAAGCAAAACGTAAAAACACCACGGTGGGGGTGAACACGCAGGCCTCAGAAAATCCGGATGAAGCAgggg                                                                                                                                                                                >  2:366390/1‑250 (MQ=255)                                                                  gtaCTGACGGCTTCATCGTTGGCGTCGGATATAACTTCTGATTAGCCAGGTAACACAGCGTTATGACAACACGCCGGAACCGGTAGGCTTTTTTGTGGGGTGAATATGGCAGTAAAGATTTCAGGAGTCATGAAAGACGGAACAGGAAAACCGGTACAGAACTGCACCATTCAGCTGAAAGCCAGACGTAACAGCACCACGGTGGTGGTGAACAAGGTGGGCTCAGAGCATCAGGATCAAGCCGGGCGtt                                                                                                                                                                             >  2:48353/3‑250 (MQ=255)                                                                     ttGACGGATTCATCGTTGGGGTCGGTTATAAATTCTGATTAGCCAGGGAACACAGTGTTATGACAGCCCGCCGGAACCGGTGGGCTTTTTTGTGGGGTGAATATGGCAGTAAAGATTTCAGGAGTCCTGACAGACGGCCCAGGAAAACCGGTACAGAACTGCCCCATTCAGCTGAAAGCAAGACGTAACAGCACCACGGTGGTGGTGAGCACCGGGGGCTCAGAGAATCCGGATGAAGCCGGGCGTTACa                                                                                                                                                                          >  2:80997/2‑250 (MQ=255)                                                                      tGACGGATTCATCGTTGGGGTCGGTTATAAATTCTGATTAGCCAGGTAACACAGTGTTATGACAGCCCGCCGGAACCGGCGGGCTTTTTTGTGGGGTGAATATGGCAGTAAAGATTTCAGGAGTCCTGAAAGACGGCACAGGAAAACCGGTACAGAACTGCACCATTCAGCTGAAAGCCAGACGTAACAGCACCACGGTGGTGGTGAACACGGTGGGCTCAGAGAATCCGGATGAAGCCGGGCGTTACAGc                                                                                                                                                                        >  1:227407/1‑251 (MQ=255)                                                                                   gttggggtCGGTTATAAATTATGATTCGCCAGGCAACACAGTGTTATGACAGCCCGCCGGACCCGGTGGGCTTTTTTGTGGGGTGCATATGGCAGTAAAGATTTCAGGAGTCCTGAAAGACGGCACAGGAAAACCGGTACAGAACTGCACCATTCAGCTGAAAGCCAGACGTAACAGCACCACGGTGGTGGTGAACACGGTGGGCACAGAGAATCCGGATGAAGCCGGGCGTTACAACATggctgtggagg                                                                                                                                                           >  2:298073/7‑242 (MQ=255)                                                                                      ggggtCGGTTATAAATTCTGATTAGCCAGGTAACACAGTGTTATGACAGCCCGCCGGAACCGGTGGGCTTTTTTGTGGGGTGAATATGGCAGTAAAGATTTCAGGAGTCCTGAAAGACGGCACAGGAAAACCGGTACAGAACTGCACCATTCAGCTGAAAGCCAGACGTAACAGCACCACGGTGGTGGTGAACACGGTGGGCTCAGAGAATCCGGATGAAGCCGGGCGTTACAGCATGGATGTGGAGTAc                                                                                                                                                         <  1:426892/247‑1 (MQ=255)                                                                                       tggtctgTTATAAATTCTGATTAGCCAGGTACCATAGTGTTATGACAGCCCGTCGGACCCGGTGGGCTTTGTTGTGGGGTGAATATGGTAGTAAAGATTTCAGGCGTCCTGAAAGATGGCACAGGAAAACCGGTACAGAACTGCACCATTCAGCTGAAAGCCAGACGTAACAGCACCACGGTGGTGGTGAACGCGGTGGGCTCAGAGAAGCCGGTTGAAGCTGGGCGTTACAGCATGGATGTGGAGTACg                                                                                                                                                        <  2:223864/244‑1 (MQ=255)                                                                                        ggtCGGTTATAAGTTCTGAGTAGCCAGGTAATACAGGGTGATGACAGCCCGCCGGTTCAGGCGGGCTTTTTTGTGGGGTGAATATGGCAGTAAAGATTTCAGGTGTACTGAAAGACGGCACAGGAAAACCGGTACAGAACTGCACAATCCAGCTTAAAGCAAAACGTAACAGGACCACGGTGGTGGTGAGCACGCTGGCGTCAGAAAATCCGGATGAAGCCGGGCGTTACAGCATGGACGTTGAGTACGGt                                                                                                                                                      <  2:191792/250‑1 (MQ=255)                                                                                        ggtCGGTTATAAATTCTGATTAGCCAGGTAACACAGTGTTATGACAGCCCGCCGGAACCGGTGGGCTTTTTTGTGGGGTGAATATGGCAGTAAAGATTTCAGGAGTCCTGAAAGACGGCACAGGAAAACCGGTACAGAACTGCACCATTCAGCTGAAAGCCAGACGTAACAGCACCACGGTGGTGGTGAACACGGTGGGCTCAGAGAATCCGGATGAAGCCGGGCGTTACAGCATGGATGTGGAGTACGGt                                                                                                                                                      >  1:72875/2‑251 (MQ=255)                                                                                                  aaattCTGATTAGCCAGGTAACACAGTGTTATGACAGCCCGCCGGAACCGGTGGGCTTTTTTGTGGGGTGAATATGGCAGTAAAGATTTCAGGAGTCCTGAAAGACGGCACAGGAAAACCGGTACAGAACTGCACCATTCAGCTGAAAGCCAGACGTAACAGCACCACGGTGGTGGTGAACACGGTGGGCTCAGAGAATCCGGATGAAGCCGGGCGTTACAGCATGGATGTGGAGTACGGTCAGTACAgtg                                                                                                                                            <  1:350811/248‑3 (MQ=255)                                                                                                    attCTGATTAGCCAGGTAACACAGTGTTATGACAGCCCGCCGGAACCGGTGGGTTTTTTTGTGGGGTGAATATGGCAGTATAGATTTCAGGAGGCCTGAAAGACGGCACAGGAAAACCGGTACAGAACTGCACCATTCAGCTGAAAGCCAGACGTAACAGCACCACGGTGGTGGTGAACACGGTGGGCTCAGAGAATCCGGATGAAGCCGGGCGTTACAGCATGTATGTGGAGTACGGTCAGTACAgtgtc                                                                                                                                          <  2:192808/250‑5 (MQ=255)                                                                                                         gATTAGCCAGGTAACACAGTGTTATGACAGCCCGCCGGAACCGGTGGGCTTTTTTGTGGGGTGAATATGGCAGTAAAGATTTCAGGAGTCCTGAAAGACGGCACAGGAAAACCGGTACAGAACTGCACCATTCAGCTGAAAGCCAGACGTAACAGCACCACGGTGGTGGTGAACACGGTGGGCTCAGAGAATCCGGATGAAGCCGGGCGTTACAGCATGGATGTGGAGTACGGTCAGTACAgtgtcatcc                                                                                                                                      <  1:14988/250‑9 (MQ=255)                                                                                                         gATTAGCCAGGTAACACAGTGTTATGACAGCCCACCGGTTCAGGCGGGCTTTTTTGTGGGGTGAATATGGCAGTAAAGATTTCAGGTGTACTGAAAGACGGCACAGGAAAACCGGTACAGAACTGCACAATCCAGCTGAAAGCAAAAAGTAACAGCACCACGGTGGTGGTGAACACGCTGGCCTCAGAAAATCCGGATGAAGCCGGGCGTTACAGCATGGACGTTGAGTACGGTCAGTACAGCGTTATTCt                                                                                                                                     >  1:344460/1‑251 (MQ=255)                                                                                                         gATTAGCAAGGTAACACAGTGTTATGACAGCCCGCCGGAACCGGTGGGCTTTTTTGTGGGGTGAATATGGCAGTAAAGATTTCAGGAGTCCTGAAAGACGGCACAGGAAAACCGGTACAGAACTGCACCATTCAGCTGAAAGCCAGACGTAACAGCACCACGGTGGTGGAGAACACGGTGGGCTCAGAGAATCCGGATGAAGCCGGGCGTTACAGCATGGATGTGGAGTACGGTCAGTACAgtgtcatcct                                                                                                                                     >  1:324221/1‑242 (MQ=255)                                                                                                                   gTAACACAGTGTTATGACAGCCCGCCGGAACCGGTGGGCTTTTTTGTGGGGTGAATATGGCAGTAAAGATTTCAGGAGTCCTGAAAGACGGCACAGGAAAACCGGTACAGAACTGCACCATTCAGCTGAAAGCCAGACGTAACAGCACCACGGTGGTGGTGAACACGGTGGGCTCAGAGAATCCGGATGAAGCCGGGCGTTACAGCATGGATGTGGAGTACGGTCAGTACAgtgtcatcctgcaggttgac                                                                                                                           <  2:9245/251‑20 (MQ=255)                                                                                                                      acacAGTGTTATGACAGCCCGCCGGAACCGGTGGGCTTTTTTGTGGGGTGAATATGGCAGTAAAGATTTCAGGAGTCCTGAAAGACGGCACAGGAAAACCGGTACAGAACTGCACCATTCAGCTGAAAGCACGACGTAACGGCACCACGGTGGTGGTGAACACGGTGGGCTCAGAGAATCCGGATGAAGCCGGGCGTTACAGCATGGATGTGGAGTCCGGTCCGTACAgtgtcatcctgcaggatgacggt                                                                                                                        >  1:356569/1‑229 (MQ=255)                                                                                                                      acacAGTGTTATGACAGCCAGCCGGAACCGGTGGGCTTTTTTGCGGGGTGAATATGGCAGTAAAGATTTCAGGAGTCCTGAAAGACGGCACAGGAAAACCGGTACAGAACTGCACCATTCAGCTGAAAGCCAGACGTAACAGCACCACGGTGGTGGTGAACACGGTGGGCTCAGCGAATCCGGATGCAGCCGGGCGTTACAGCATGGATGTGGAGTACGGTCAGTAccgtgtcatcctgcaggttgacggt                                                                                                                        >  2:54950/1‑227 (MQ=255)                                                                                                                       cacaGTGTTATGACAGCCCGCCGGAACCGGTGGGCTTTTTTGTGGGGTGAATATGGCAGTAAAGATTTCAGGAGTCCTGAAAGACGGCACAGGAAAACCGGTACAGAACTGCACCATTCAGCTGAAAGCCAGACGTAACAGCACCACGGTGGTGGTGAACACGGTGGGCTCAGAGAATCCGGATGAAGCCGGGCGTTACAGCATGGATGTGGAGTACGGTCAGTACAgtgtcatcctgcaggttgacggtt                                                                                                                       >  1:391761/1‑228 (MQ=255)                                                                                                                         caGTGTTATGACAGCCCGCCGGAACCGGTGGGCTTTTTTGTGGGGTGAATATGGCAGTAAAGATTTCAGGAGTCCTGAAAGACGGCACAGGAAAACCGGTACAGAACTGCACCATTCAGCTGAAAGCCAGACGTAACAGCACCACGGTGGTGGTGAACACGGTGGGCTCAGAGAATCCGGATGAAGCCGGGCGTTACAGCATGGATGTGGAGTACGGTCAGTACAgtgtcatcctgcaggttgacggtttt                                                                                                                     <  2:314857/251‑26 (MQ=255)                                                                                                                                                     cggacTTTTTTGTGGGGTGAATATGGCAATAAAGATTTCAGATGTACTGAACGACGGGACAGGAAAACCGGTACAGAACTGCACAATACAGCTGAACGCAAAAAGTAACAGCACCACGGTGGGGGTGAACACGCTGGCCTCAGAAACTCCGGCTGAAGCAGGGCGTTACAGCATGGACGTTGAGTACGGACAGTACAGCGTTATTCGGTTGGTGTAAGGATTCCCGCCGTCACATGCCGGGACCATTCCCg                                                                                         >  2:456643/5‑251 (MQ=255)                                                                                                                                                      gggtttttttGTGGGGTGAATATGGCAGTAAAGATTTCAGGTGTACTGAAAGAGGGCATAGGAAAACCGTGACAGAACTGAACAACCCAGCTGAAAGCAAAACTTAGCAGCTCCGGGGTGGTGGTGAGCACGCTGGCCTCAGAAAATCCGGATGAAGCGGGGTGTTACATCTTGGACTTTGGGTACGGTAAGGGTAGGGTTATTCTGTTGTGGGAAGTGTTTCCGCCGTCACATGCCGGGAGCATTACCgt                                                                                        <  2:251722/247‑1 (MQ=255)                                                                                                                                                          ttttttGTGGGGTGAATATGGCAGTAAAGATTTCAGGAGTCCTGAAAGACGGCACAGGAAAACCGGTACAGAACTGCACCATTCAGCTGAAAGCCAGACGTAACAGCACCACGGTGGTGGTGAACACGGTGGGCTCAGAGAATCCGGATGAAGCCGGGCGTTACAGCATGGATGTGGAGTACGGTCAGTACAGTGTCATCCTGCAGGTTGACGGTTTTCCACCATCGCACGCCGGGACCATCACCGTGTAt                                                                                    >  1:12564/1‑251 (MQ=255)                                                                                                                                                           ttgtgggggggTGAATAGGGCAGTAAAAATTTCAGGTGTACTAAAAGACGGCCCAGGAAAACCGGTACAAAACTGCACAATCCAGCTAAAAGCAAAACGTAACGGCACCACGGGGGTGGTGAACACGCGGGCCTCAGAAAATCCGGAGGAAGCCGGGTGTTACAGCATGGACGTTGAGTCCGGTCAGTACAGCGTTATTCTTTTGGTGTAAGGATTCCCGCCGTCACATGCCGGGACCATTACCGTGTa                                                                                     <  2:377348/242‑1 (MQ=255)                                                                                                                                                                  ggggAGAATATGGCAGTAAAGATTTCAGGTGTACTGAAAGACGGCACAGAAAAACCGGTACAGACCTGCACACTCCAACTGAAAGCAAAACGTAACAGCACCACGGTGGAGGTGAACACGCTGGCCTAAGAAAATCCGGATGAAGCCGGGCGTTACAGCATGGCCGTTGCGTACGGTCAGTACAGCGTTATTCTGTTGGTGGAAGGATTCCCGCCGTCACATGCCGGGACCATTACCGTGTATGAAGATtc                                                                            >  2:297954/1‑251 (MQ=255)                                                                                                                                                                         atatGGCAGTAATGATTTCAGGAGTCCTGAAAGACGGCACAGGAAAACCGGTACAGAACTGCACCATTCAGCTGAAAGCCAGACGTAACAGCACCACGGTGGTGGTGAACACGGTGGGCTCAGAGAATCCGGATGAAGCCGGGCGTTACAGCATGGATGTGGAGTACGGTCAGTACAGTGTCATCCTGCAGGTTGACGGTTTTCCACCATCGCACGCCGGGACCATCACCGAGTATGAAGATTCACAAccg                                                                     >  1:228729/1‑250 (MQ=255)                                                                                                                                                                         atatGGCAGTAAAGATTTCAGGTGTACTGAAAGACGGCACAGGAAAACCGGTACAGAACTGCACAATCCAGCTGAAAGCAAAACGTAACAGCACCACGGTGGTGGTGAACACGCTGGCCTCAGAAAATCCGGATGAAGCCGGGCGTTACAGCATGGACGTTGAGTACGGTCAGTACAGCGTTATTCTGTTGGTGGAAGGATTCCCGCCGTCACATGCCGGGACCATTACCGTGTATGAAGATTCTCAAccc                                                                     >  1:200756/1‑251 (MQ=255)                                                                                                                                                                         atatGGCAGTAAAGATTTCAGGAGTCCTGAAAGACGGCACAGGAAAACCGGTACAGAACTGCACCATTCAGCTGAAAGCCAGACGTAACAGCACCACGGTGGTGGTGAACACGGTGGGCTCAGAGAATCCGGATGAAGCCGGGCGTTACAGCATGGATGTGGAGTACGGTCAGTACAGTGTCATCCAGCAGGTTGACGGTTTTCCACCATCGCACGCCGGGACCATCACCGTGTATGAAGATTCACAAccg                                                                     >  1:216607/1‑250 (MQ=255)                                                                                                                                                                           atGGCAGTAAAGATTTCAGGAGTTCTGAAAGACGGCACAGGAAAACCGGTACAGAACTGCACCATTCAGCTGAAAGCCAGACGTAACAGCACCACGGTGGTGGTGAACACGGTGGGCTCAGAGAATCCGGATGAAGCCGGGCGTTACAGCATGGATGTGGAGTACGGTCAGTACAGTGTCATCCTGCAGGTTGACGGTTTTCCACCATCGCACGCCGGGACCATCACCGTGTATGAAGATTCACAAccgg                                                                    <  2:336621/250‑3 (MQ=255)                                                                                                                                                                             ggCAGTAAAGATTTCAGGAGTCCTGAAAGACGGCACAGGAAAACCGGTACAGAACTGCACCATTCAGCTGAAAGCCAGACGTAACAGCACCACGGTGGTGGTGAACACGGTGGGCTCAGAGAATCCGGATGAAGCCGGGCGTTACAGCATGGATGTGGAGTACGGTCAGTACAGTGTCATCCTGCAGGTTGACGGTTTTCCACCATCGCACGCCGGGACCATCACCGTGTATGAAGATTCACAAccgggg                                                                  <  2:107834/250‑5 (MQ=255)                                                                                                                                                                              gCAGTAAAGATTTCAGGAGTCCTGAAAGACGGCACAGGAAAACCGGTACAGAACTGCACCATTCAGCTGAAAGCCAGACGTAACAGCACCACGGTGGTGGTGAACACGGTGGGCTCAGAGAATCCGGATGAAGCCGGGCGTTACAGCATGGATGTGGAGTACGGTCAGTACAGTGTCATCCTGCAGGTTGACGGTTTTCCACCATCGCACGCCGGGACCATCACCGTGTATGAAGATTCACAAccggggac                                                                <  2:271516/251‑7 (MQ=255)                                                                                                                                                                                 gTAAAGATTTCAGGAGTCCTGAAAGACGGCACAGGAAAACCGGTACAGAACTGCACCATTCAGCTGAAAGCCAGACGTAACAGCACCACGGTGGTGGTGAACACGGTGGGCTCAGAGAATCCGGATGAAGCCGGGCGTTACAGCATGGATGTGGAGTACGGTCAGTACAGTGTCATCCTGCAGGTTGACGGTTTTCCACCATCGCACGCCGGGACCATCACCGTGTATGAAGATTCACAACCGGGGACGCt                                                             >  1:50414/1‑251 (MQ=255)                                                                                                                                                                                     aGATTTCAGGAGTTCTGAAAGACGGCACAGGAAAACCGGTACAGAACTGCACCATTCAGCTGAAAGCCAGACGTAACAGCACCACGGTGGTGGTGAACACGGTGGGCTCAGAGAATCTGGATTAAGCCGGGCGTTACAGCATGGATGTGGAGTACGGTCAGGACAGTGTCATCCTGCAGGTTGACGGTTTTCCACCATCTCACGCCGGGACCATCACCGTGTATGAAGATTCACAACCGGGGACGCTGAAt                                                         <  1:444898/251‑1 (MQ=255)                                                                                                                                                                                     aGATTTCAGGAGTCCTGAAAGACGGCACAGTAAAACCGGTACAGAACTGCACCATTCAGCTGAAAGCCAGACGTAACAGCACCACGGTGGTGGTGAACACGGTGGGCTCAGAGAATCCGGATGAAGCCGGGCGTTACAGCATGGATGGGGAGAACGGTCAGTACAGTGTCATCCTGCAGGTTGACGGTTTTCCACCATCGCACGCCGGGACCATCACCGTGTATGAAGATTCACAACCGGGGACGCTGAAt                                                         >  2:107083/1‑251 (MQ=255)                                                                                                                                                                                        tttCAGGTGTACTGAAAGACGGCACAGGAAAACCGGTACAGACCTGCACAATCCAGCTGAAAGCAAAACGTAACAGCACCACGGTGGTGGAGAACACGCTGGCCTCAGAAAATCCGGATGAAGCCGGGCGTTACAGCATGGACGTTGAGTACGGTCAGTACAGCGTTATTCTGTTGGTGGAAGGATTCCCGCCGTCACATGCCGGGACCATTACCGTGTATGAAGATTCTCAACCCGGTACGCTGAATGAt                                                      >  1:194147/1‑251 (MQ=255)                                                                                                                                                                                          tCAGGAGTCCTGAAAGACGGCACAGGAAAACCGGTACAGAACTGCACCATTCAGCTGAAAGCCAGACGTAACAGCACCACGGTGGTGGTGAACACGGTGGGCTCAGAGAATCCGGATGAAGCCGGGCGTTACAGCATGGATGTGGAGTACGGTCAGTACAGTGTCATCCTGCAGGTTGACGGTTTTCCACCATCGCACGCCGGGACCATCACCGTGTATGAAGATTCACAACCGGGGACGCTGAATGAttt                                                    >  1:204163/1‑251 (MQ=255)                                                                                                                                                                                                  aCTGAAAGACGGCACAGGAAAACCGGTACAGAACTGCACAATCCAGCTGAAAGCAAAACGTAACAGCACCACGGTGGTGGTGAACACGCTGGCCTCAGAAAATCCGGATGAAGCCGGGCGTTACAGCATGGACGTTGAGTACGGTCAGTACAGCGTTATTCTGTTGGTGGAAGGATTCCCGCCGTCACATGCCGGGACCATTACCGTGTATGAAGATTCTCAACCCGGTACGCTGAATGATTTTCTCGGTg                                            >  1:251064/1‑251 (MQ=255)                                                                                                                                                                                                     gAAAGAAGGCACAGGAAAACCGGTACAGAACAGCACAATCCAGCTGAAAGCAAAACGTAACAGCACCACGGTGGTGGTGAACACGCGGGCCACAGAAAATCCGGATGAAGCCGGGCGTTACAGACTGGACGTTGAGTACGGTCAGTACAGCGTTATTCTGTTGGTGGAAGGATACCCGCCGTCACATGCCGGGACCATTCCCGTGTATGAAGATTCTCAACCCGGGACACTGAATGATTTTCTCggagca                                          >  2:356267/1‑246 (MQ=255)                                                                                                                                                                                                          aCGGCACACGAAAACCGGTACAGAACTGCACAATCCAGCTGCAAGCAAAACGTAACAGCACCACGGTGGTGGTGAACCCGCTGGCCTCAGAAAATCCGGATAAAGCCGGGCGTTACAGCCTGGACGTTGAGTACGGTCCGTACAGCGTTATTCTGTTGGTGGAAGGATTCCCGCCGTCACATGCCGGGACCATTACCGTGTATGAAGCTTCTCAACCCGGTACGCTGAATGATTTTCTCGGTGCCCTGACg                                    >  2:380228/1‑251 (MQ=255)                                                                                                                                                                                                           cGGCACAGGAAAACCGGTACAGAACTGCACCATTCAGCTGAAAGCCAGACGTAACAGCACCACGGTGGTGGTGAACACGGTGGGCTCAGAGAATCCGGATGAAGCCGGGCGTTACAGCATGGATGTGGAGTACGGTCAGTACAGTGTCATCCTGCAGGTTGACGGTTTTCCACCATCGCACGCCGGGACCATCACCGTGTATGAAGATTCACAACCGGGGACGCTGAATGATTTTCTCTGTGCCATGACgg                                   >  1:102459/1‑251 (MQ=255)                                                                                                                                                                                                            ggCACAGGAAAACCGGTACAGAACTGCACCATTCAGCTGAAAGCCAGACGTAACAGCACCACGGTGGTGGTGAACACGGTGGGCTCAGAGAATCCGGATGAAGCCGGGCGTTACAGCATGGATGTGGAGTACGGTCAGTACAGTGTCATCCTGCAGGTTGACGGTTTTCCACCATCGCACGCCGGGACCATCACCGTGTATGAAGATTCACAACCGGGGACGCTGAATGATTTTCTCTGTGCCATGACgga                                  <  2:72875/251‑1 (MQ=255)                                                                                                                                                                                                            ggCACAGGAAAACCGGTACAGAACTGCACCATTCAGCTGAAAGCCAGACGTAACAGCACCACGGTGGTGGTGAACACGGTGGGCTCAGAGAATCCGGATGAAGCCGGGCGTTACAGCATGGATGTGGAGTACGGTCAGTACAGTGTCATCCTGCAGGTTGACGGTTTTCCACCATCGCACGCCGGGACCATCACCGTGTATGAAGATTCACAACCGGGGACGCTGAATGATTTTCTCTGTGCCATGACgg                                   >  1:73145/1‑250 (MQ=255)                                                                                                                                                                                                            ggCACAGGAAAACCGGTACAGAACTGCACAATCCAGCTGAAAGCAAAACGTAACAGCACCACGGTGGTGGTGAACACGCTGGCCTCAGAAAATCCGGATGAAGCCGGGCGTTACAGCATGGACGTTGAGTACGGTCAGTACAGCGTTATTCTGTTGGTGGAAGGATTCCCGCCGTCACATGCCGGGACCATTACCGTGTATGAAGATTCTCAACCCGGTACGCTGAATGATTTTCTCGGTGCCATGACgg                                   >  1:399198/1‑250 (MQ=255)                                                                                                                                                                                                                       aCCGGTACAGAACTGCACCATTCAGCTGAAAGCCAGACGTAACAGCACCACGGTGGTGGTGAACACGGTGGGCTCAGAGAATCCGGATGAAGCCGGGCGTTACAGCATGGATGTGGAGTACGGTCAGTACAGTGTCATCCTGCAGGTTGACGGTTTTCCACCATCGCACGCCGGGACCATCACCGTGTATGAAGATTCACAACCGGGGACGCTGAATGATTTTCTCTGTGCCATGACGGAGGATGATGccc                       <  1:90255/251‑1 (MQ=255)                                                                                                                                                                                                                           gTACAGAACTGCACCATTCAGCTGAAAGCCAGACGTAACAGCACCACGGTGGTGGTGAACACGGTGGGCTCAGAGAATCCGGATGAAGCCGGGCGTTACAGCATGGATGTGGAGTACGGTCAGTACAGTGTCATCCTGCAGGTTGACGGTTTTCCACCATCGCACGCCGGGACCATCACCGTGTATGAAGATTCACAACCGGGGACGCTGAATGATTTTCTCTGTGCCATGACGGAGGATGATGCCCggcc                   <  1:348194/251‑4 (MQ=255)                                                                                                                                                                                                                                gAACTGCACCATTCAGCTGAAAGCCAGACGTAACAGCACCACGGTGGTGGTGAACACGGTGGGCTCAGAGAATCCGGATGAAGCCGGGCGTTACAGCATGGATGTGGAGTACAGTCAGTACAGTGTCATCCTGCAGGTTGACGGTTTTCCACCATCGCACGCCTGGACCATCACCGTGTATGAAGATTCACAACCGGGGACGCTGAATGATTTGCTCTGTGCCATGACGGAGGATGATGCCCGGCCGGAgg              <  1:54486/251‑1 (MQ=255)                                                                                                                                                                                                                                gAACTGCACAATCCAGCTGAAAGCAAAACGTCACAGCACCACGGTGGTGGTGAACACGCTGGCCTCAGAAAATCCGGATGAAGCCGGGCGTTACAGCATGGACGTTGAGTACGGTCAGTACAGCGTTATTCTGTTGGTGGAAGGATTCCCGCCGTCACATGCCGGGACCATTACCGTGTATGAAGATTCTCAACCCGGTACGCTGAATGATTTTCTCGGTGCCATGACGGAGGATGATGCCCGTCCGGAgg              >  1:223011/1‑251 (MQ=255)                                                                                                                                                                                                                                          acccAGTTGAAACCAAAACGTACAAGCCCCAGGGTGGTGGTGAACACGCGGGCCTCAGAAAATCCGGATGAGCCCGGGCGTTACAGCATGGACGTTGAGTTCGGTCAGTACAGCGTTATTCTGTTGGTGGAAGGATTCCCGCCGTCACATGCCGGGACCATTACCGTGTATGAAGATTCTCAACCCGGTACGCTGAATGATTTTCTCGGTGCCATGACGGAGGATGATGCCCGTCCGGAGGCACTGCGCCg    <  2:317456/249‑1 (MQ=255)                                                                                                                                                                                                                                            ccAGCTGAAAGCAAAACGTAACAGAACCAGGGGGGTGGTGAACACGCTGGCCTCAGAAAATCCGGATGAAGCCGGGCGTTACAGCATGGACGTTGAGTACGGTCAGTACAGTGTTATTCTGTTGGTGGAAGGATTCCCGCCGTCACATGCCGGGACCATTACCGTGTATGAAGATTCTCAACCCGGTACGCTGAATGATTTTCTCGGTGCCATGACGGAGGATGATGCCCGTCCGGAGGCACTGCGCCGtt  <  1:16027/251‑1 (MQ=255)                                                                                                                                                                                                                                            |                                                                                                                                                                                                                                                           GTTTAACCCGACCGAATCCGTGGCCATTGATATTGCTTATGAAGGCCCCGGCAGTGGCGACTGGCGCACTGACGGTTTCATCGTGGGTGTCGGTTATAAGTTCTGATTAGCCAGGTAACACAGTGTTATGACAGCCCGCCGGTTCAGGCGGGCTTTTTTGTGGGGTGAATATGGCAGTAAAGATTTCAGGTGTACTGAAAGACGGCACAGGAAAACCGGTACAGAACTGCACAATCCAGCTGAAAGCAAAACGTAACAGCACCACGGTGGTGGTGAACACGCTGGCCTCAGAAAATCCGGATGAAGCCGGGCGTTACAGCATGGACGTTGAGTACGGTCAGTACAGCGTTATTCTGTTGGTGGAAGGATTCCCGCCGTCACATGCCGGGACCATTACCGTGTATGAAGATTCTCAACCCGGTACGCTGAATGATTTTCTCGGTGCCATGACGGAGGATGATGCCCGTCCGGAGGCACTGCGCCGTT  >  NC_000913/1428879‑1429364

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑