Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,429,072	0	A	C	70.0%	62.0 / 29.0	52	V8V (GTA→GTC)	stfR	putative prophage side tail fiber protein StfR
Reads supporting (aligned to +/- strand):  ref base A (8/7);  new base C (20/15);  total (28/24)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.88e-01
Rejected as consensus: Frequency below/above cutoff threshold.

CGCCACAGCAACACGTCTCTGGCGTGGGGAGCTGGCGTGCAGTTTAACCCGACCGAATCCGTGGCCATTGATATTGCTTATGAAGGCCCCGGCAGTGGCGACTGGCGCACTGACGGTTTCATCGTGGGTGTCGGTTATAAGTTCTGATTAGCCAGGTAACACAGTGTTATGACAGCCCGCCGGTTCAGGCGGGCTTTTTTGTGGGGTGAATATGGCAGTAAAGATTTCAGGTGTACTGAAAGACGGCACAGGAAAACCGGTACAGAACTGCACAATCCAGCTGAAAGCAAAACGTAACAGCACCACGGTGGTGGTGAACACGCTGGCCTCAGAAAATCCGGATGAAGCCGGGCGTTACAGCATGGACGTTGAGTACGGTCAGTACAGCGTTATTCTGTTGGTGGAAGGATTCCCGCCGTCACATGCCGGGACCATTACCGTGTATGAAGATTCTCAACCCGGTACGCTGAATGATTTTCTCGGTG  >  NC_000913/1428838‑1429322                                                                                                                                                                                                                                           |                                                                                                                                                                                                                                                           cGCCACAGCAACACGTCTCTGGCGTGGGGAGCAGGCGTGCAGTTTAACCCGACCGAATCCGTGGCCATTGATATTGCTTATGAAGGCCCCGGCAGTGGCGACTGGAGCACTGACGGTTTCATCGTGGGTATCGGTTATAAGTTCTGATTAGCCAGGTAACACAGTGTTATGACAGACCGCCGGTTCAGGCGGGCTTTTTTGTGGGGTGAATATGGCCGTAAAGATTTCAGGTGTACTGAAAGACGGcac                                                                                                                                                                                                                                              >  1:446729/1‑249 (MQ=255)                                          gTTTAACCCGACCGAATCCGTGGCCATTGATATTGCTTATGAAGGCCCCGGCAGTGGCGACTGGCGCACTGACGGTTTCATCGTGGGTGTCGGTTATAAGTTCTGATTAGCCAGGTAACACAGTGTTATGACAGCCCGCCGGTTCAGGCGGGCTTTTTTGTGGGGTGAATATGGCAGTAAAGATTTCAGGTGTACTGAAAGACGGCACAGGAAAACCGGTACAGAACTGCACAATCCAGCTGAAAGCaaaa                                                                                                                                                                                                   <  1:68746/251‑1 (MQ=255)                                              aatccggcagcgtccgtcgttgttGATATTGCTTATGAAGGCTCCGGCAGTGGCTACTGGCGTACTGACGGATTCATCGTTGGGGTCGGTTATAAATTCTGATTAGCCAGGTAACACAGTGTTATGACAGCCCGCCGGAACCGGTGGGCTTTTTTGTGGGGTGAATATGGCAGTAAAGATTTCAGGAGTCCTGAAAGACGGCACAGGAAAACCGGTATAGAACTGCACAATTCAGCTGAAAGCCAGACGTa                                                                                                                                                                                               <  1:253312/229‑1 (MQ=255)                                                   ggcagcgtccgtcgttgttGATATTGCTTATGAAGGCTCCGGCAGTGGCGACTGGCGTGCTGACGGATTCATCGTTGGGGTCGGTTATAAATTCTGATTAGCCAGGTAACACAGTGTTATGACAGCCCGCCGGAACCGGTGGGCTTTTTTGTGGGGTGAATATGGCAGTAAAGATTTCAGGAGTCCTGAAAGACGGCACAGGAAAACCGGTACAGAACTGCACCATTCAGCTGAAAGCCAGACGTAACAGc                                                                                                                                                                                          <  1:232966/234‑1 (MQ=255)                                                     cagcgtccgtcgttgtggATATTGCTTATGAAGGCTCCGGCAGTGGCTACTGGCGTACTGACGGATTCATCGTTGGGGTCGTTTATAAATTCTGATTAGCCAGGTAACACAGGGTTATGACAGCCCGCCGTAACCGGTGGGCTTTTTTGTGGGGTGAATATGGCAGTAAAGATTTCAGGAGTCCTGAAAGACGGCACAGGAAAACCGGTACAGAACTGCCCCATTCAGCTGAAAGCCAGACGTAACAGcac                                                                                                                                                                                        <  1:133569/234‑1 (MQ=255)                                                           ccGTGGCCATTGATATTGCTTATGAAGGCCCCGGCAGTGGCGACTGGCGCACTGACGGTTTCATCGTGGGTGTCGGTTATAAGTTCTGATTAGCCAGGTAACACAGTGTTATGACAGCCCGCCGGTTCAGGCGGGCTTTTTTGTGGGGTGAATATGGCAGTAAAGATTTCAGGTGTACTGAAAGACGGCACAGGAAAACCGGTACAGAACTGCACAATCCAGCTGAAAGCAAAACGTAACAGCACCACgg                                                                                                                                                                                   <  1:96628/250‑1 (MQ=255)                                                                    ttGATATTGCTTATGAAGGCTCCGGCAGTGGCGACTGGCGTACTGACGGATTCATCGTTGGGGTCGGTTATAAATTCTGATTAGCCAGGTAACACAGTGTTATGACAGCCCGCCGGAACCGGTGGGCTTTTTTGTGGGGTGAATATGGCAGTAAAGATTTCAGGAGTCCTGAAAGACGGCACAGGAAAACCGGTACAGAACTGCACCATTCAGATGAAAGCCAGACATAACAGCACCACGGTGGGGGTGa                                                                                                                                                                          >  2:336023/1‑250 (MQ=255)                                                                      gATATTGCTTATGAAGGCTCCGGCAGTGGCGACTGGCGTACTGACGGATTCATCGTTGGGGTCGGTTATAAATTCTGATTAGCCAGGTAACACAGTGTTATGACAGCCCGCCGGAACCGGTGGGCTTTTTTGTGGGGTGAATATGGCAGTAAAGATTTCAGGAGTCCTGAAAGACGGCACAGGAAAACCGGTACAGAACTGCACCATTCAGCTGAAAGCCAGACGTAACAGCACCACGGTGGTGGTGAaca                                                                                                                                                                       <  1:448775/251‑1 (MQ=255)                                                                             cTTATGAAGGCTCCGGCAGTGGCGACTGGCGTACTGACGGATTCATCGTTGGGGTCGGTTATAAATTCTGATTAGCCAGGTAACACAGTGTTATGACAGCCCGCCGGAACCGGTGGGCTTTTTTGTGGGGTGAATATGGCAGTAAAGATTTCAGGGGTCCTGAAAGACGGCACAGGAAAACCGGTACAGAACTGCACCATTCAGCTGAAAGCCAGACGTAACAGCACCACGGAGGTGGTGAACACGGTggg                                                                                                                                                                >  1:51030/1‑250 (MQ=255)                                                                              ttATGAGGGCCCCGGCAGTGGCGACTGGCGCACTGACGGTTTCATCGTGGGTGTCGGTTATAAGTTCTGATTAGCCAGGTAACACAGTGTTATGACAGCCCGCCGGTTCAGGCGGGCTTTTTTGTGGGGTGAATATGGCAGTAAAGATTTCAGGTGTACTGAAAGACGGCACAGGAAAACCGGTACAGCAATGCCCAATCCAGCTGAAAGCAAAACGTAACAGCACCACGGTGGTGGTGAACAAGCTGGcc                                                                                                                                                               >  2:167829/1‑251 (MQ=255)                                                                               tATGAAGGCTCCGGCAGTGGCTACTGGCGTACTGACGGATTCAGCGTTGGGGTCGGTTATAAATTCTGATTAGCCAGGTAACACAGTGTTATGACAGCCCGCCGGAACCGGTGGGCTTTTTTGTGGGGTGAATATGGCAGTAAAGATTTCAGGAGTCCTGAAAGACGGCACAGGAAAACCGGTACAGAACTGCACCATTCAGCTGAAAGCCAGACGTAACAGCACCACGGTGGTGGTGAACACGGTggg                                                                                                                                                                <  2:369488/249‑2 (MQ=255)                                                                                agtatgtcccgggCAGTGGCGACTGGCGCATTGACGGTTTCTGCGTGGGTTTCGGTTATAAGTTCTGATTTGCCTGGTAACACAGTGTTATGACAGCCCGCCGGTTCAGGCGGGCTTTTTTGTGGGGTGAATATGGCAGTAAAGATTTCAGGTGTACTGAAAGACGGCACAGGAAAACCGGTACAGAACTGCACAATCCAGCTGAAAGCAAAACGTAACAGCACCACGGTGGTGGTGAACACGCTGGCCt                                                                                                                                                              <  2:354781/239‑1 (MQ=255)                                                                                   aaGGCTCCGGCAGTGGCGACTGGCGTACTGACGGATTCATCGTTGGGGTCGGTTATAAATTCTGATTAGCCAGGTAACACAGTGTTATGACAGCCCGCCGGAACCGGTGGGCTTTTTTGTGGGGTGAATATGGCAGTAAAGATTTCAGGAGTCCTGAAAGACGGCACAGGAAAACCGGTACAGAACTGCACCATTCAGCTGAAAGCCAGACGTAACAGCACCACGGTGGTGGTGAACACGGTGGGCTc                                                                                                                                                             >  2:124966/1‑248 (MQ=255)                                                                                       ctccGGCAGTGGCGACTGGCGTACTGACGGATTCATCGTTGGGGTCGGTTATAAATTCTGATTAGCCAGGTAACACAGTGTTATGACAGCCCGCCGGAACCGGTGGGCTTTTTTGTGGGGTGAATATGGCAGTAAAGATTTCAGGAGTCCTGAAAGACGGCACAGGAAAACCGGTACAGAACTGCACCATTCAGCTGAAAGCCAGACGTAACAGAACCACGGTGGTGGTGAACACGGTGGGCTCAGagact                                                                                                                                                      >  2:126145/3‑247 (MQ=255)                                                                                         ccGGCAGTGGCGACTGGCGGACTGACGGATTCATCGTTGGGGTCGGTTATAAATTCTGATTAGCCAGGTAACACAGTGTTATGACAGCCCGCCGGAACCGGTGGGCTTTTTTGTGGGGTGAATATGGCAGTAAAGATTTCAGGAGTCCTGAAAGACGGCACAGGAAAACCGGTACAGAACTGCACCATTCAGCTTAAAGCCAGACGTAACAGCACCACGGTGGTGGTGAACACGGTGGGCTCAGAGAATcc                                                                                                                                                    <  1:292426/251‑1 (MQ=255)                                                                                             cAGTGGCGACTGGCGCACTGACGGTTTCATCGTGGGTGTCGGTTATAAGTTCTGAGTAGCCAGGTAACACAGTTTTATGACAGCCCGCCGGTTCAGGCGGGCTTTTTTGTGGGGTGAATATGGCAGTAAAGATTTCAGGTGTACTGAAAGACGGCACAGGAAAACCGGTACAGAACTGCACAATCCAGCTGAAAGCAAAACGTAACAGCGCCACGGTGGTGGTGAACACGCTGGCCTCAGAAAATCCGGAt                                                                                                                                                <  1:286365/251‑1 (MQ=255)                                                                                                tGGCGACTGGCGTACTGACGGATTCATCGTTGGGGTCGGTTATAAATTCTGATTAGCCAGGTAACACAGTGTTATGACAGCCCGCCGGAACCGGTGGGCTTTTTTGTGGGGTGAATATGGCAGTAAAGATTTCAGGAGTCCTGAAAGACGGCACAGGAAAACCGGTACAGAACTGCACCATTCAGCTGAAAGCCAGACGTAACAGCACCACGGTGGTGGTGAACACGGTGGGCTCAGAGAATCCGGATGa                                                                                                                                              >  1:114762/1‑250 (MQ=255)                                                                                                       tGGCGCACTGACGGTTTAATCGTGGGTGCCGGTTATAAGTTCTGATTAGCCAGGTAACACAGTGTTATGCCAGCCCGCCGGTTCAGGCGGGCTTTTTTGTGGGGTGAATATGGCAGTAAAGATTTCAGGGGTACTGAAAGACGGCCCAGGAAAACCGGTACCGAACTGCACAATCCAGCTGAAAGCAAAACGTAAAAACACCACGGTGGGGGTGAACACGCAGGCCTCAGAAAATCCGGATGAAGCAgggg                                                                                                                                      >  2:366390/1‑250 (MQ=255)                                                                                                           gtaCTGACGGCTTCATCGTTGGCGTCGGATATAACTTCTGATTAGCCAGGTAACACAGCGTTATGACAACACGCCGGAACCGGTAGGCTTTTTTGTGGGGTGAATATGGCAGTAAAGATTTCAGGAGTCATGAAAGACGGAACAGGAAAACCGGTACAGAACTGCACCATTCAGCTGAAAGCCAGACGTAACAGCACCACGGTGGTGGTGAACAAGGTGGGCTCAGAGCATCAGGATCAAGCCGGGCGtt                                                                                                                                   >  2:48353/3‑250 (MQ=255)                                                                                                              ttGACGGATTCATCGTTGGGGTCGGTTATAAATTCTGATTAGCCAGGGAACACAGTGTTATGACAGCCCGCCGGAACCGGTGGGCTTTTTTGTGGGGTGAATATGGCAGTAAAGATTTCAGGAGTCCTGACAGACGGCCCAGGAAAACCGGTACAGAACTGCCCCATTCAGCTGAAAGCAAGACGTAACAGCACCACGGTGGTGGTGAGCACCGGGGGCTCAGAGAATCCGGATGAAGCCGGGCGTTACa                                                                                                                                >  2:80997/2‑250 (MQ=255)                                                                                                               tGACGGATTCATCGTTGGGGTCGGTTATAAATTCTGATTAGCCAGGTAACACAGTGTTATGACAGCCCGCCGGAACCGGCGGGCTTTTTTGTGGGGTGAATATGGCAGTAAAGATTTCAGGAGTCCTGAAAGACGGCACAGGAAAACCGGTACAGAACTGCACCATTCAGCTGAAAGCCAGACGTAACAGCACCACGGTGGTGGTGAACACGGTGGGCTCAGAGAATCCGGATGAAGCCGGGCGTTACAGc                                                                                                                              >  1:227407/1‑251 (MQ=255)                                                                                                                            gttggggtCGGTTATAAATTATGATTCGCCAGGCAACACAGTGTTATGACAGCCCGCCGGACCCGGTGGGCTTTTTTGTGGGGTGCATATGGCAGTAAAGATTTCAGGAGTCCTGAAAGACGGCACAGGAAAACCGGTACAGAACTGCACCATTCAGCTGAAAGCCAGACGTAACAGCACCACGGTGGTGGTGAACACGGTGGGCACAGAGAATCCGGATGAAGCCGGGCGTTACAACATggctgtggagg                                                                                                                 >  2:298073/7‑242 (MQ=255)                                                                                                                               ggggtCGGTTATAAATTCTGATTAGCCAGGTAACACAGTGTTATGACAGCCCGCCGGAACCGGTGGGCTTTTTTGTGGGGTGAATATGGCAGTAAAGATTTCAGGAGTCCTGAAAGACGGCACAGGAAAACCGGTACAGAACTGCACCATTCAGCTGAAAGCCAGACGTAACAGCACCACGGTGGTGGTGAACACGGTGGGCTCAGAGAATCCGGATGAAGCCGGGCGTTACAGCATGGATGTGGAGTAc                                                                                                               <  1:426892/247‑1 (MQ=255)                                                                                                                                tggtctgTTATAAATTCTGATTAGCCAGGTACCATAGTGTTATGACAGCCCGTCGGACCCGGTGGGCTTTGTTGTGGGGTGAATATGGTAGTAAAGATTTCAGGCGTCCTGAAAGATGGCACAGGAAAACCGGTACAGAACTGCACCATTCAGCTGAAAGCCAGACGTAACAGCACCACGGTGGTGGTGAACGCGGTGGGCTCAGAGAAGCCGGTTGAAGCTGGGCGTTACAGCATGGATGTGGAGTACg                                                                                                              <  2:223864/244‑1 (MQ=255)                                                                                                                                 ggtCGGTTATAAGTTCTGAGTAGCCAGGTAATACAGGGTGATGACAGCCCGCCGGTTCAGGCGGGCTTTTTTGTGGGGTGAATATGGCAGTAAAGATTTCAGGTGTACTGAAAGACGGCACAGGAAAACCGGTACAGAACTGCACAATCCAGCTTAAAGCAAAACGTAACAGGACCACGGTGGTGGTGAGCACGCTGGCGTCAGAAAATCCGGATGAAGCCGGGCGTTACAGCATGGACGTTGAGTACGGt                                                                                                            <  2:191792/250‑1 (MQ=255)                                                                                                                                 ggtCGGTTATAAATTCTGATTAGCCAGGTAACACAGTGTTATGACAGCCCGCCGGAACCGGTGGGCTTTTTTGTGGGGTGAATATGGCAGTAAAGATTTCAGGAGTCCTGAAAGACGGCACAGGAAAACCGGTACAGAACTGCACCATTCAGCTGAAAGCCAGACGTAACAGCACCACGGTGGTGGTGAACACGGTGGGCTCAGAGAATCCGGATGAAGCCGGGCGTTACAGCATGGATGTGGAGTACGGt                                                                                                            >  1:72875/2‑251 (MQ=255)                                                                                                                                           aaattCTGATTAGCCAGGTAACACAGTGTTATGACAGCCCGCCGGAACCGGTGGGCTTTTTTGTGGGGTGAATATGGCAGTAAAGATTTCAGGAGTCCTGAAAGACGGCACAGGAAAACCGGTACAGAACTGCACCATTCAGCTGAAAGCCAGACGTAACAGCACCACGGTGGTGGTGAACACGGTGGGCTCAGAGAATCCGGATGAAGCCGGGCGTTACAGCATGGATGTGGAGTACGGTCAGTACAgtg                                                                                                  <  1:350811/248‑3 (MQ=255)                                                                                                                                             attCTGATTAGCCAGGTAACACAGTGTTATGACAGCCCGCCGGAACCGGTGGGTTTTTTTGTGGGGTGAATATGGCAGTATAGATTTCAGGAGGCCTGAAAGACGGCACAGGAAAACCGGTACAGAACTGCACCATTCAGCTGAAAGCCAGACGTAACAGCACCACGGTGGTGGTGAACACGGTGGGCTCAGAGAATCCGGATGAAGCCGGGCGTTACAGCATGTATGTGGAGTACGGTCAGTACAgtgtc                                                                                                <  2:192808/250‑5 (MQ=255)                                                                                                                                                  gATTAGCCAGGTAACACAGTGTTATGACAGCCCGCCGGAACCGGTGGGCTTTTTTGTGGGGTGAATATGGCAGTAAAGATTTCAGGAGTCCTGAAAGACGGCACAGGAAAACCGGTACAGAACTGCACCATTCAGCTGAAAGCCAGACGTAACAGCACCACGGTGGTGGTGAACACGGTGGGCTCAGAGAATCCGGATGAAGCCGGGCGTTACAGCATGGATGTGGAGTACGGTCAGTACAgtgtcatcc                                                                                            <  1:14988/250‑9 (MQ=255)                                                                                                                                                  gATTAGCCAGGTAACACAGTGTTATGACAGCCCACCGGTTCAGGCGGGCTTTTTTGTGGGGTGAATATGGCAGTAAAGATTTCAGGTGTACTGAAAGACGGCACAGGAAAACCGGTACAGAACTGCACAATCCAGCTGAAAGCAAAAAGTAACAGCACCACGGTGGTGGTGAACACGCTGGCCTCAGAAAATCCGGATGAAGCCGGGCGTTACAGCATGGACGTTGAGTACGGTCAGTACAGCGTTATTCt                                                                                           >  1:344460/1‑251 (MQ=255)                                                                                                                                                  gATTAGCAAGGTAACACAGTGTTATGACAGCCCGCCGGAACCGGTGGGCTTTTTTGTGGGGTGAATATGGCAGTAAAGATTTCAGGAGTCCTGAAAGACGGCACAGGAAAACCGGTACAGAACTGCACCATTCAGCTGAAAGCCAGACGTAACAGCACCACGGTGGTGGAGAACACGGTGGGCTCAGAGAATCCGGATGAAGCCGGGCGTTACAGCATGGATGTGGAGTACGGTCAGTACAgtgtcatcct                                                                                           >  1:324221/1‑242 (MQ=255)                                                                                                                                                            gTAACACAGTGTTATGACAGCCCGCCGGAACCGGTGGGCTTTTTTGTGGGGTGAATATGGCAGTAAAGATTTCAGGAGTCCTGAAAGACGGCACAGGAAAACCGGTACAGAACTGCACCATTCAGCTGAAAGCCAGACGTAACAGCACCACGGTGGTGGTGAACACGGTGGGCTCAGAGAATCCGGATGAAGCCGGGCGTTACAGCATGGATGTGGAGTACGGTCAGTACAgtgtcatcctgcaggttgac                                                                                 <  2:9245/251‑20 (MQ=255)                                                                                                                                                               acacAGTGTTATGACAGCCCGCCGGAACCGGTGGGCTTTTTTGTGGGGTGAATATGGCAGTAAAGATTTCAGGAGTCCTGAAAGACGGCACAGGAAAACCGGTACAGAACTGCACCATTCAGCTGAAAGCACGACGTAACGGCACCACGGTGGTGGTGAACACGGTGGGCTCAGAGAATCCGGATGAAGCCGGGCGTTACAGCATGGATGTGGAGTCCGGTCCGTACAgtgtcatcctgcaggatgacggt                                                                              >  1:356569/1‑229 (MQ=255)                                                                                                                                                               acacAGTGTTATGACAGCCAGCCGGAACCGGTGGGCTTTTTTGCGGGGTGAATATGGCAGTAAAGATTTCAGGAGTCCTGAAAGACGGCACAGGAAAACCGGTACAGAACTGCACCATTCAGCTGAAAGCCAGACGTAACAGCACCACGGTGGTGGTGAACACGGTGGGCTCAGCGAATCCGGATGCAGCCGGGCGTTACAGCATGGATGTGGAGTACGGTCAGTAccgtgtcatcctgcaggttgacggt                                                                              >  2:54950/1‑227 (MQ=255)                                                                                                                                                                cacaGTGTTATGACAGCCCGCCGGAACCGGTGGGCTTTTTTGTGGGGTGAATATGGCAGTAAAGATTTCAGGAGTCCTGAAAGACGGCACAGGAAAACCGGTACAGAACTGCACCATTCAGCTGAAAGCCAGACGTAACAGCACCACGGTGGTGGTGAACACGGTGGGCTCAGAGAATCCGGATGAAGCCGGGCGTTACAGCATGGATGTGGAGTACGGTCAGTACAgtgtcatcctgcaggttgacggtt                                                                             >  1:391761/1‑228 (MQ=255)                                                                                                                                                                  caGTGTTATGACAGCCCGCCGGAACCGGTGGGCTTTTTTGTGGGGTGAATATGGCAGTAAAGATTTCAGGAGTCCTGAAAGACGGCACAGGAAAACCGGTACAGAACTGCACCATTCAGCTGAAAGCCAGACGTAACAGCACCACGGTGGTGGTGAACACGGTGGGCTCAGAGAATCCGGATGAAGCCGGGCGTTACAGCATGGATGTGGAGTACGGTCAGTACAgtgtcatcctgcaggttgacggtttt                                                                           <  2:314857/251‑26 (MQ=255)                                                                                                                                                                                              cggacTTTTTTGTGGGGTGAATATGGCAATAAAGATTTCAGATGTACTGAACGACGGGACAGGAAAACCGGTACAGAACTGCACAATACAGCTGAACGCAAAAAGTAACAGCACCACGGTGGGGGTGAACACGCTGGCCTCAGAAACTCCGGCTGAAGCAGGGCGTTACAGCATGGACGTTGAGTACGGACAGTACAGCGTTATTCGGTTGGTGTAAGGATTCCCGCCGTCACATGCCGGGACCATTCCCg                                               >  2:456643/5‑251 (MQ=255)                                                                                                                                                                                               gggtttttttGTGGGGTGAATATGGCAGTAAAGATTTCAGGTGTACTGAAAGAGGGCATAGGAAAACCGTGACAGAACTGAACAACCCAGCTGAAAGCAAAACTTAGCAGCTCCGGGGTGGTGGTGAGCACGCTGGCCTCAGAAAATCCGGATGAAGCGGGGTGTTACATCTTGGACTTTGGGTACGGTAAGGGTAGGGTTATTCTGTTGTGGGAAGTGTTTCCGCCGTCACATGCCGGGAGCATTACCgt                                              <  2:251722/247‑1 (MQ=255)                                                                                                                                                                                                   ttttttGTGGGGTGAATATGGCAGTAAAGATTTCAGGAGTCCTGAAAGACGGCACAGGAAAACCGGTACAGAACTGCACCATTCAGCTGAAAGCCAGACGTAACAGCACCACGGTGGTGGTGAACACGGTGGGCTCAGAGAATCCGGATGAAGCCGGGCGTTACAGCATGGATGTGGAGTACGGTCAGTACAGTGTCATCCTGCAGGTTGACGGTTTTCCACCATCGCACGCCGGGACCATCACCGTGTAt                                          >  1:12564/1‑251 (MQ=255)                                                                                                                                                                                                    ttgtgggggggTGAATAGGGCAGTAAAAATTTCAGGTGTACTAAAAGACGGCCCAGGAAAACCGGTACAAAACTGCACAATCCAGCTAAAAGCAAAACGTAACGGCACCACGGGGGTGGTGAACACGCGGGCCTCAGAAAATCCGGAGGAAGCCGGGTGTTACAGCATGGACGTTGAGTCCGGTCAGTACAGCGTTATTCTTTTGGTGTAAGGATTCCCGCCGTCACATGCCGGGACCATTACCGTGTa                                           <  2:377348/242‑1 (MQ=255)                                                                                                                                                                                                           ggggAGAATATGGCAGTAAAGATTTCAGGTGTACTGAAAGACGGCACAGAAAAACCGGTACAGACCTGCACACTCCAACTGAAAGCAAAACGTAACAGCACCACGGTGGAGGTGAACACGCTGGCCTAAGAAAATCCGGATGAAGCCGGGCGTTACAGCATGGCCGTTGCGTACGGTCAGTACAGCGTTATTCTGTTGGTGGAAGGATTCCCGCCGTCACATGCCGGGACCATTACCGTGTATGAAGATtc                                  >  2:297954/1‑251 (MQ=255)                                                                                                                                                                                                                  atatGGCAGTAATGATTTCAGGAGTCCTGAAAGACGGCACAGGAAAACCGGTACAGAACTGCACCATTCAGCTGAAAGCCAGACGTAACAGCACCACGGTGGTGGTGAACACGGTGGGCTCAGAGAATCCGGATGAAGCCGGGCGTTACAGCATGGATGTGGAGTACGGTCAGTACAGTGTCATCCTGCAGGTTGACGGTTTTCCACCATCGCACGCCGGGACCATCACCGAGTATGAAGATTCACAAccg                           >  1:228729/1‑250 (MQ=255)                                                                                                                                                                                                                  atatGGCAGTAAAGATTTCAGGTGTACTGAAAGACGGCACAGGAAAACCGGTACAGAACTGCACAATCCAGCTGAAAGCAAAACGTAACAGCACCACGGTGGTGGTGAACACGCTGGCCTCAGAAAATCCGGATGAAGCCGGGCGTTACAGCATGGACGTTGAGTACGGTCAGTACAGCGTTATTCTGTTGGTGGAAGGATTCCCGCCGTCACATGCCGGGACCATTACCGTGTATGAAGATTCTCAAccc                           >  1:200756/1‑251 (MQ=255)                                                                                                                                                                                                                  atatGGCAGTAAAGATTTCAGGAGTCCTGAAAGACGGCACAGGAAAACCGGTACAGAACTGCACCATTCAGCTGAAAGCCAGACGTAACAGCACCACGGTGGTGGTGAACACGGTGGGCTCAGAGAATCCGGATGAAGCCGGGCGTTACAGCATGGATGTGGAGTACGGTCAGTACAGTGTCATCCAGCAGGTTGACGGTTTTCCACCATCGCACGCCGGGACCATCACCGTGTATGAAGATTCACAAccg                           >  1:216607/1‑250 (MQ=255)                                                                                                                                                                                                                    atGGCAGTAAAGATTTCAGGAGTTCTGAAAGACGGCACAGGAAAACCGGTACAGAACTGCACCATTCAGCTGAAAGCCAGACGTAACAGCACCACGGTGGTGGTGAACACGGTGGGCTCAGAGAATCCGGATGAAGCCGGGCGTTACAGCATGGATGTGGAGTACGGTCAGTACAGTGTCATCCTGCAGGTTGACGGTTTTCCACCATCGCACGCCGGGACCATCACCGTGTATGAAGATTCACAAccgg                          <  2:336621/250‑3 (MQ=255)                                                                                                                                                                                                                      ggCAGTAAAGATTTCAGGAGTCCTGAAAGACGGCACAGGAAAACCGGTACAGAACTGCACCATTCAGCTGAAAGCCAGACGTAACAGCACCACGGTGGTGGTGAACACGGTGGGCTCAGAGAATCCGGATGAAGCCGGGCGTTACAGCATGGATGTGGAGTACGGTCAGTACAGTGTCATCCTGCAGGTTGACGGTTTTCCACCATCGCACGCCGGGACCATCACCGTGTATGAAGATTCACAAccgggg                        <  2:107834/250‑5 (MQ=255)                                                                                                                                                                                                                       gCAGTAAAGATTTCAGGAGTCCTGAAAGACGGCACAGGAAAACCGGTACAGAACTGCACCATTCAGCTGAAAGCCAGACGTAACAGCACCACGGTGGTGGTGAACACGGTGGGCTCAGAGAATCCGGATGAAGCCGGGCGTTACAGCATGGATGTGGAGTACGGTCAGTACAGTGTCATCCTGCAGGTTGACGGTTTTCCACCATCGCACGCCGGGACCATCACCGTGTATGAAGATTCACAAccggggac                      <  2:271516/251‑7 (MQ=255)                                                                                                                                                                                                                          gTAAAGATTTCAGGAGTCCTGAAAGACGGCACAGGAAAACCGGTACAGAACTGCACCATTCAGCTGAAAGCCAGACGTAACAGCACCACGGTGGTGGTGAACACGGTGGGCTCAGAGAATCCGGATGAAGCCGGGCGTTACAGCATGGATGTGGAGTACGGTCAGTACAGTGTCATCCTGCAGGTTGACGGTTTTCCACCATCGCACGCCGGGACCATCACCGTGTATGAAGATTCACAACCGGGGACGCt                   >  1:50414/1‑251 (MQ=255)                                                                                                                                                                                                                              aGATTTCAGGAGTTCTGAAAGACGGCACAGGAAAACCGGTACAGAACTGCACCATTCAGCTGAAAGCCAGACGTAACAGCACCACGGTGGTGGTGAACACGGTGGGCTCAGAGAATCTGGATTAAGCCGGGCGTTACAGCATGGATGTGGAGTACGGTCAGGACAGTGTCATCCTGCAGGTTGACGGTTTTCCACCATCTCACGCCGGGACCATCACCGTGTATGAAGATTCACAACCGGGGACGCTGAAt               <  1:444898/251‑1 (MQ=255)                                                                                                                                                                                                                              aGATTTCAGGAGTCCTGAAAGACGGCACAGTAAAACCGGTACAGAACTGCACCATTCAGCTGAAAGCCAGACGTAACAGCACCACGGTGGTGGTGAACACGGTGGGCTCAGAGAATCCGGATGAAGCCGGGCGTTACAGCATGGATGGGGAGAACGGTCAGTACAGTGTCATCCTGCAGGTTGACGGTTTTCCACCATCGCACGCCGGGACCATCACCGTGTATGAAGATTCACAACCGGGGACGCTGAAt               >  2:107083/1‑251 (MQ=255)                                                                                                                                                                                                                                 tttCAGGTGTACTGAAAGACGGCACAGGAAAACCGGTACAGACCTGCACAATCCAGCTGAAAGCAAAACGTAACAGCACCACGGTGGTGGAGAACACGCTGGCCTCAGAAAATCCGGATGAAGCCGGGCGTTACAGCATGGACGTTGAGTACGGTCAGTACAGCGTTATTCTGTTGGTGGAAGGATTCCCGCCGTCACATGCCGGGACCATTACCGTGTATGAAGATTCTCAACCCGGTACGCTGAATGAt            >  1:194147/1‑251 (MQ=255)                                                                                                                                                                                                                                   tCAGGAGTCCTGAAAGACGGCACAGGAAAACCGGTACAGAACTGCACCATTCAGCTGAAAGCCAGACGTAACAGCACCACGGTGGTGGTGAACACGGTGGGCTCAGAGAATCCGGATGAAGCCGGGCGTTACAGCATGGATGTGGAGTACGGTCAGTACAGTGTCATCCTGCAGGTTGACGGTTTTCCACCATCGCACGCCGGGACCATCACCGTGTATGAAGATTCACAACCGGGGACGCTGAATGAttt          >  1:204163/1‑251 (MQ=255)                                                                                                                                                                                                                                           aCTGAAAGACGGCACAGGAAAACCGGTACAGAACTGCACAATCCAGCTGAAAGCAAAACGTAACAGCACCACGGTGGTGGTGAACACGCTGGCCTCAGAAAATCCGGATGAAGCCGGGCGTTACAGCATGGACGTTGAGTACGGTCAGTACAGCGTTATTCTGTTGGTGGAAGGATTCCCGCCGTCACATGCCGGGACCATTACCGTGTATGAAGATTCTCAACCCGGTACGCTGAATGATTTTCTCGGTg  >  1:251064/1‑251 (MQ=255)                                                                                                                                                                                                                                           |                                                                                                                                                                                                                                                           CGCCACAGCAACACGTCTCTGGCGTGGGGAGCTGGCGTGCAGTTTAACCCGACCGAATCCGTGGCCATTGATATTGCTTATGAAGGCCCCGGCAGTGGCGACTGGCGCACTGACGGTTTCATCGTGGGTGTCGGTTATAAGTTCTGATTAGCCAGGTAACACAGTGTTATGACAGCCCGCCGGTTCAGGCGGGCTTTTTTGTGGGGTGAATATGGCAGTAAAGATTTCAGGTGTACTGAAAGACGGCACAGGAAAACCGGTACAGAACTGCACAATCCAGCTGAAAGCAAAACGTAACAGCACCACGGTGGTGGTGAACACGCTGGCCTCAGAAAATCCGGATGAAGCCGGGCGTTACAGCATGGACGTTGAGTACGGTCAGTACAGCGTTATTCTGTTGGTGGAAGGATTCCCGCCGTCACATGCCGGGACCATTACCGTGTATGAAGATTCTCAACCCGGTACGCTGAATGATTTTCTCGGTG  >  NC_000913/1428838‑1429322

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑