breseq  version 0.39.0  
mutation predictions | marginal predictions | summary statistics | genome diff | command line log

Predicted mutations
evidence position mutation annotation gene description
MC JC 257,908 Δ776 bp insB9–[crl] insB9, insA9, [crl]
MC JC 1,299,499 Δ1,199 bp insH21 insH21
MC JC 1,978,503 Δ776 bp insB5–insA5 insB5, insA5
JC JC 1,995,620 IS5 (–) +4 bp intergenic (‑261/‑32) uvrY ← / → yecU DNA‑binding transcriptional activator UvrY/protein YecU
RA 2,173,363 Δ2 bp intergenic (‑490/+918) gatD ← / ← gatB galactitol‑1‑phosphate 5‑dehydrogenase/galactitol‑specific PTS enzyme IIB component
RA 3,089,711 C→T intergenic (+33/‑44) galP → / → yggI galactose:H(+) symporter/protein YggI
MC JC 4,583,432 Δ3,267 bp coding (64‑3330/3513 nt) hsdR ← type I restriction enzyme EcoKI endonuclease subunit

Unassigned missing coverage evidence
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 5165 5293 129 2 [1] [1] 2 [yaaX] [yaaX]
* * ÷ NC_000913 9977 9999 23 2 [1] [1] 2 satP acetate/succinate:H(+) symporter
* * ÷ NC_000913 11911 11987 77 2 [1] [1] 2 yaaI/dnaK DUF2541 domain‑containing protein YaaI/chaperone protein DnaK
* * ÷ NC_000913 17053 17133 81 2 [1] [1] 2 sokC/nhaA small regulatory RNA antitoxin SokC/Na(+):H(+) antiporter NhaA
* * ÷ NC_000913 60866 61002 137 2 [1] [1] 2 rapA RNA polymerase‑binding ATPase and RNAP recycling factor
* * ÷ NC_000913 131605 131819 215 2 [1] [1] 2 [acnB] [acnB]
* * ÷ NC_000913 133744 133830 87 2 [1] [1] 2 acnB AcnB
* * ÷ NC_000913 164440 164706 267 2 [1] [1] 2 [hrpB] [hrpB]
* * ÷ NC_000913 167992 168039 48 2 [1] [1] 2 fhuA ferrichrome outer membrane transporter/phage receptor
* * ÷ NC_000913 174487 174593 107 2 [1] [1] 2 hemL glutamate‑1‑semialdehyde 2,1‑aminomutase
* * ÷ NC_000913 242368 242456 89 2 [1] [1] 2 fadE acyl‑CoA dehydrogenase
* * ÷ NC_000913 288141 288239 99 2 [1] [1] 2 yagH putative xylosidase/arabinosidase
* * ÷ NC_000913 289184 289311 128 2 [1] [1] 2 [argF] [argF]
* * ÷ NC_000913 298124 298163 40 2 [1] [1] 2 paoD molybdenum cofactor insertion chaperone PaoD
* * ÷ NC_000913 319351 319418 68 2 [1] [1] 2 rclA cupric reductase RclA
* * ÷ NC_000913 345326 345420 95 2 [1] [1] 2 [yahM] [yahM]
* * ÷ NC_000913 357772 357937 166 2 [1] [1] 2 [cynR] [cynR]
* * ÷ NC_000913 359891 360080 190 2 [1] [1] 2 [cynS]–[cynX] [cynS],[cynX]
* * ÷ NC_000913 370891 370909 19 2 [1] [1] 2 mhpB 3‑carboxyethylcatechol 2,3‑dioxygenase
* * ÷ NC_000913 388639 388677 39 3 [1] [1] 2 [tauD] [tauD]
* * ÷ NC_000913 436406 436548 143 2 [1] [1] 2 thiL thiamine monophosphate kinase
* * ÷ NC_000913 452965 453040 76 2 [1] [1] 2 ampG muropeptide:H(+) symporter
* * ÷ NC_000913 457110 457164 55 2 [1] [0] 2 clpP ATP‑dependent Clp protease proteolytic subunit
* * ÷ NC_000913 457414 457590 177 3 [1] [1] 2 [clpX] [clpX]
* * ÷ NC_000913 497786 497851 66 2 [0] [1] 2 [adk] [adk]
* * ÷ NC_000913 568631 568758 128 2 [1] [1] 2 [emrE]–[ylcJ] [emrE],[ylcJ]
* * ÷ NC_000913 589956 590114 159 2 [0] [1] 3 nfrA exopolysaccharide secretion system outer membrane protein NfrA
* * ÷ NC_000913 624484 624607 124 2 [1] [1] 2 [fepB] [fepB]
* * ÷ NC_000913 661373 661545 173 2 [1] [1] 2 [ybeF] [ybeF]
* * ÷ NC_000913 700129 700168 40 2 [0] [1] 2 umpH UMP phosphatase
* * ÷ NC_000913 719858 720207 350 2 [1] [1] 2 speF inducible ornithine decarboxylase
* * ÷ NC_000913 795030 795129 100 2 [1] [1] 2 [modA] [modA]
* * ÷ NC_000913 802024 802200 177 2 [1] [1] 2 ybhI putative tricarboxylate transporter
* * ÷ NC_000913 807196 807345 150 2 [1] [1] 2 [ybhC] [ybhC]
* * ÷ NC_000913 834570 834623 54 2 [1] [1] 2 dinG ATP‑dependent DNA helicase DinG
* * ÷ NC_000913 836470 836562 93 2 [1] [1] 2 hcxB hydroxycarboxylate dehydrogenase B
* * ÷ NC_000913 853020 853065 46 2 [0] [1] 2 [rybA] [rybA]
* * ÷ NC_000913 862615 862680 66 2 [1] [1] 2 ybiY putative pyruvate formate‑lyase activating enzyme YbiY
* * ÷ NC_000913 870174 870205 32 2 [1] [1] 3 gsiB glutathione ABC transporter periplasmic binding protein
* * ÷ NC_000913 882784 882832 49 2 [1] [1] 2 [ybjG] [ybjG]
* * ÷ NC_000913 886540 886581 42 2 [1] [1] 2 ybjJ inner membrane protein YbjJ
* * ÷ NC_000913 887611 887666 56 3 [1] [1] 2 rcdA RcdA
* * ÷ NC_000913 921349 921452 104 2 [1] [1] 2 macB ABC‑type tripartite efflux pump ATP binding/membrane subunit
* * ÷ NC_000913 948498 948614 117 2 [1] [1] 2 ycaM putative transporter YcaM
* * ÷ NC_000913 953529 953564 36 2 [1] [1] 2 [pflB] [pflB]
* * ÷ NC_000913 991914 991949 36 2 [1] [1] 2 pepN aminopeptidase N
* * ÷ NC_000913 993977 994019 43 2 [0] [1] 3 ssuB aliphatic sulfonate ABC transporter ATP binding subunit
* * ÷ NC_000913 1002575 1002700 126 2 [1] [1] 2 elfG putative fimbrial‑like adhesin protein
* * ÷ NC_000913 1017890 1017979 90 2 [1] [1] 2 ycbZ putative ATP‑dependent protease YcbZ
* * ÷ NC_000913 1019517 1019597 81 2 [1] [1] 2 ompA outer membrane protein A
* * ÷ NC_000913 1026971 1027124 154 2 [1] [1] 2 [mgsA]–[yccT] [mgsA],[yccT]
* * ÷ NC_000913 1060015 1060080 66 2 [1] [1] 2 torA trimethylamine N‑oxide reductase 1
* * ÷ NC_000913 1114166 1114313 148 2 [1] [1] 2 [msyB]–[mdtG] [msyB],[mdtG]
* * ÷ NC_000913 1208188 1208284 97 2 [0] [1] 3 tfaP putative tail fiber assembly protein TfaP
* * ÷ NC_000913 1211628 1211678 51 2 [1] [1] 2 mcrA/iraM Type IV methyl‑directed restriction enzyme EcoKMcrA/anti‑adaptor protein IraM
* * ÷ NC_000913 1212794 1212897 104 2 [1] [1] 3 ycgX DUF1398 domain‑containing protein YcgX
* * ÷ NC_000913 1243043 1243058 16 2 [1] [1] 2 ldcA murein tetrapeptide carboxypeptidase
* * ÷ NC_000913 1255817 1255892 76 2 [1] [1] 2 ycgV putative autotransporter adhesin YcgV
* * ÷ NC_000913 1280547 1280605 59 2 [1] [1] 2 narG nitrate reductase A subunit alpha
* * ÷ NC_000913 1311111 1311207 97 3 [1] [1] 2 tonB Ton complex subunit TonB
* * ÷ NC_000913 1314302 1314481 180 2 [1] [1] 2 ompW outer membrane protein W
* * ÷ NC_000913 1343681 1343830 150 2 [1] [1] 2 yciT DNA‑binding transcriptional dual regulator YciT
* * ÷ NC_000913 1351208 1351321 114 2 [1] [1] 2 fabI/ycjD enoyl‑[acyl‑carrier‑protein] reductase/DUF559 domain‑containing protein YcjD
* * ÷ NC_000913 1383156 1383289 134 2 [1] [1] 2 ycjW DNA‑binding transcriptional repressor YcjW
* * ÷ NC_000913 1388162 1388364 203 2 [1] [1] 2 [tyrR]–[tpx] [tyrR],[tpx]
* * ÷ NC_000913 1401297 1401349 53 2 [1] [1] 2 abgT p‑aminobenzoyl glutamate:H(+) symporter
* * ÷ NC_000913 1445823 1445874 52 2 [1] [1] 2 [ynbE] [ynbE]
* * ÷ NC_000913 1462272 1462297 26 2 [1] [1] 2 paaK phenylacetate‑CoA ligase
* * ÷ NC_000913 1533185 1533194 10 2 [0] [1] 2 pptA tautomerase PptA
* * ÷ NC_000913 1590487 1590577 91 2 [1] [1] 2 ydeT/hipA fimbrial usher domain‑containing protein YdeT/serine/threonine‑protein kinase toxin HipA
* * ÷ NC_000913 1596422 1596506 85 2 [1] [1] 2 hipB/lsrK antitoxin/DNA‑binding transcriptional repressor HipB/autoinducer‑2 kinase
* * ÷ NC_000913 1613828 1613879 52 2 [1] [1] 2 sad succinate semialdehyde dehydrogenase (NAD(P)(+)) Sad
* * ÷ NC_000913 1613923 1614056 134 2 [1] [1] 2 sad succinate semialdehyde dehydrogenase (NAD(P)(+)) Sad
* * ÷ NC_000913 1623077 1623103 27 3 [1] [0] 2 dgcZ diguanylate cyclase DgcZ
* * ÷ NC_000913 1632402 1632490 89 2 [1] [1] 2 ydfJ/ynfT putative transporter YdfJ/protein YnfT
* * ÷ NC_000913 1647604 1647650 47 2 [1] [0] 2 [ydfX]–[dicC] [ydfX],[dicC]
* * ÷ NC_000913 1677186 1677236 51 2 [1] [0] 2 pntA pyridine nucleotide transhydrogenase subunit alpha
* * ÷ NC_000913 1694032 1694125 94 2 [1] [1] 2 uidB glucuronide:H(+) symporter
* * ÷ NC_000913 1694866 1695004 139 2 [1] [1] 2 uidA beta‑glucuronidase
* * ÷ NC_000913 1700504 1700559 56 2 [1] [1] 2 malX PTS enzyme IIBC component MalX
* * ÷ NC_000913 1721259 1721294 36 2 [1] [1] 2 [ydhI]–[ydhJ] [ydhI],[ydhJ]
* * ÷ NC_000913 1757183 1757193 11 2 [1] [1] 2 pykF/lpp pyruvate kinase 1/murein lipoprotein
* * ÷ NC_000913 1765127 1765163 37 2 [1] [1] 2 ydiH/menI uncharacterized protein YdiH/1,4‑dihydroxy‑2‑naphthoyl‑CoA hydrolase
* * ÷ NC_000913 1777074 1777159 86 2 [1] [0] 2 ydiF putative acetate‑CoA transferase YdiF
* * ÷ NC_000913 1784840 1784937 98 2 [1] [1] 2 ppsA phosphoenolpyruvate synthetase
* * ÷ NC_000913 1785946 1785977 32 2 [1] [1] 2 ppsA phosphoenolpyruvate synthetase
* * ÷ NC_000913 1820604 1820675 72 3 [1] [1] 2 chbC N,N'‑diacetylchitobiose‑specific PTS enzyme IIC component
* * ÷ NC_000913 1838178 1838291 114 2 [1] [1] 2 ynjC putative ABC transporter membrane subunit YnjC
* * ÷ NC_000913 1842908 1843022 115 2 [1] [1] 2 gdhA glutamate dehydrogenase
* * ÷ NC_000913 1876183 1876276 94 2 [1] [1] 2 nimT 2‑nitroimidazole exporter
* * ÷ NC_000913 1877482 1877587 106 2 [1] [1] 2 [yoaF] [yoaF]
* * ÷ NC_000913 2031499 2031568 70 3 [1] [1] 2 dcm DNA‑cytosine methyltransferase
* * ÷ NC_000913 2109142 2109258 117 2 [1] [1] 2 rfbX polyisoprenol‑linked O16‑antigen repeat unit flippase
* * ÷ NC_000913 2119697 2119870 174 2 [1] [1] 2 wzxC colanic acid repeat unit flippase
* * ÷ NC_000913 2121257 2121345 89 2 [1] [1] 2 wcaJ UDP‑glucose:undecaprenyl‑phosphate glucose‑1‑phosphate transferase
* * ÷ NC_000913 2132664 2132686 23 2 [1] [1] 2 wcaA UDP‑glucuronate:2‑O‑Ac‑beta‑D‑Gal‑(1‑>3)‑alpha‑ L‑Fuc‑(1‑>4)‑2/3‑O‑Ac‑alpha‑L‑Fuc‑(1‑>3)‑beta‑D‑Glc‑PP‑Und beta‑(1,3)‑glucuronosyltransferase
* * ÷ NC_000913 2146429 2146457 29 2 [1] [1] 2 dgcE putative diguanylate cyclase DgcE
* * ÷ NC_000913 2176719 2176914 196 2 [1] [1] 2 gatY tagatose‑1,6‑bisphosphate aldolase 2
* * ÷ NC_000913 2190770 2190782 13 2 [1] [1] 2 yehB putative fimbrial usher protein YehB
* * ÷ NC_000913 2229284 2229557 274 2 [1] [1] 2 [dusC] [dusC]
* * ÷ NC_000913 2314360 2314477 118 2 [0] [1] 2 rcsD RcsD phosphotransferase
* * ÷ NC_000913 2320390 2320438 49 2 [1] [1] 2 atoS sensor histidine kinase AtoS
* * ÷ NC_000913 2328253 2328273 21 2 [1] [1] 2 yfaQ tandem DUF2300 domain‑containing protein YfaQ
* * ÷ NC_000913 2335491 2335523 33 2 [1] [1] 2 yfaA DUF2138 domain‑containing protein YfaA
* * ÷ NC_000913 2355552 2355580 29 2 [1] [0] 2 glpC anaerobic glycerol‑3‑phosphate dehydrogenase subunit C
* * ÷ NC_000913 2416452 2416554 103 2 [0] [1] 2 pta phosphate acetyltransferase
* * ÷ NC_000913 2423596 2423688 93 2 [1] [1] 2 rpnB/hisP recombination‑promoting nuclease RpnB/lysine/arginine/ornithine ABC transporter/histidine ABC transporter, ATP binding subunit
* * ÷ NC_000913 2434425 2434559 135 3 [1] [1] 2 dedA DedA family protein DedA
* * ÷ NC_000913 2434932 2434938 7 2 [1] [0] 2 truA tRNA pseudouridine(38‑40) synthase
* * ÷ NC_000913 2449251 2449280 30 2 [1] [1] 2 yfcO DUF2544 domain‑containing protein YfcO
* * ÷ NC_000913 2487107 2487185 79 3 [1] [1] 2 evgS sensor histidine kinase EvgS
* * ÷ NC_000913 2511743 2511816 74 2 [1] [1] 2 mntH Mn(2(+))/Fe(2(+)): H(+) symporter MntH
* * ÷ NC_000913 2559304 2559359 56 2 [1] [1] 2 intZ putative phage integrase IntZ
* * ÷ NC_000913 2594805 2594872 68 2 [1] [1] 2 tmcA tRNA(Met) cytidine acetyltransferase
* * ÷ NC_000913 2620715 2620774 60 2 [1] [1] 2 upp uracil phosphoribosyltransferase
* * ÷ NC_000913 2628598 2628684 87 2 [1] [1] 2 pdeF cyclic di‑GMP phosphodiesterase PdeF
* * ÷ NC_000913 2704206 2704250 45 2 [1] [1] 3 rnc/lepB RNase III/signal peptidase I
* * ÷ NC_000913 2707600 2707659 60 2 [1] [1] 2 rseC protein RseC
* * ÷ NC_000913 2716080 2716102 23 2 [1] [1] 2 grcA stress‑induced alternate pyruvate formate‑lyase subunit
* * ÷ NC_000913 2734356 2734422 67 2 [1] [1] 2 yfiH purine nucleoside phosphorylase YfiH
* * ÷ NC_000913 2739542 2739646 105 2 [1] [1] 2 tyrA fused chorismate mutase/prephenate dehydrogenase
* * ÷ NC_000913 2759937–2760083 2760128 46–192 3 [1] [1] 2 yfjI DUF3987 domain‑containing protein YfjI
* * ÷ NC_000913 2767947 2767992 46 2 [1] [1] 2 yfjP putative GTP‑binding protein YfjP
* * ÷ NC_000913 2838867 2838906 40 3 [1] [1] 2 ascG DNA‑binding transcriptional repressor AscG
* * ÷ NC_000913 2870034 2870123 90 2 [1] [1] 2 umpG broad specificity 5'(3')‑nucleotidase and polyphosphatase
* * ÷ NC_000913 2878652 2878718 67 2 [0] [1] 2 cas2 CRISPR‑associated endoribonuclease Cas2
* * ÷ NC_000913 2886134 2886244 111 2 [1] [1] 2 cas3 CRISPR‑associated endonuclease/helicase Cas3
* * ÷ NC_000913 2891989 2892017 29 2 [1] [1] 2 cysJ/queD sulfite reductase, flavoprotein subunit/6‑carboxy‑5,6,7,8‑tetrahydropterin synthase
* * ÷ NC_000913 2897596 2897671 76 2 [1] [1] 2 ygcS putative transporter YgcS
* * ÷ NC_000913 2925787 2925847 61 2 [1] [1] 2 queF 7‑cyano‑7‑deazaguanine reductase
* * ÷ NC_000913 2936498 2936582 85 2 [1] [1] 3 fucI L‑fucose isomerase
* * ÷ NC_000913 2952608 2952749 142 3 [1] [1] 2 recB exodeoxyribonuclease V subunit RecB
* * ÷ NC_000913 2973968 2974116 149 2 [1] [1] 2 aas fused 2‑acylglycerophospho‑ethanolamine acyltransferase/acyl‑acyl carrier protein synthetase
* * ÷ NC_000913 2984560 2984566 7 2 [1] [1] 2 yqeF putative acyltransferase
* * ÷ NC_000913 3040327 3040481 155 2 [1] [1] 2 [fldB]–[ygfX] [fldB],[ygfX]
* * ÷ NC_000913 3045995 3046197 203 2 [1] [1] 2 [gcvP] [gcvP]
* * ÷ NC_000913 3090278 3091051 774 2 [1] [1] 3 [endA] [endA]
* * ÷ NC_000913 3095252 3095300 49 2 [1] [1] 2 yggS PLP homeostasis protein
* * ÷ NC_000913 3120153 3120183 31 2 [1] [0] 2 glcA glycolate/lactate:H(+) symporter GlcA
* * ÷ NC_000913 3121020 3121221 202 2 [1] [1] 2 glcA glycolate/lactate:H(+) symporter GlcA
* * ÷ NC_000913 3182669 3182822 154 2 [0] [1] 2 zupT divalent metal ion transporter ZupT
* * ÷ NC_000913 3195971 3196065 95 2 [1] [1] 2 hldE fused heptose 7‑phosphate kinase/heptose 1‑phosphate adenyltransferase
* * ÷ NC_000913 3206447 3206469 23 2 [1] [1] 3 [ttdA] [ttdA]
* * ÷ NC_000913 3219650 3219675 26 2 [0] [1] 3 patA putrescine aminotransferase
* * ÷ NC_000913 3225844 3225948 105 2 [1] [1] 2 ebgC DUF386 domain‑containing evolved beta‑D‑galactosidase subunit beta
* * ÷ NC_000913 3239591 3239643 53 2 [1] [0] 2 alx/sstT putative membrane‑bound redox modulator Alx/serine/threonine:Na(+) symporter
* * ÷ NC_000913 3270452 3270520 69 2 [1] [1] 2 rnpB RNase P catalytic RNA component
* * ÷ NC_000913 3277115 3277294 180 3 [1] [1] 2 prlF antitoxin PrlF
* * ÷ NC_000913 3292560 3292619 60 2 [1] [1] 2 rsmI 16S rRNA 2'‑O‑ribose C1402 methyltransferase
* * ÷ NC_000913 3301022 3301055 34 2 [1] [1] 2 ubiT anaerobic ubiquinone biosynthesis accessory factor UbiT
* * ÷ NC_000913 3328573 3328686 114 2 [1] [1] 2 greA transcription elongation factor GreA
* * ÷ NC_000913 3350776 3350915 140 2 [1] [1] 2 arcB sensor histidine kinase ArcB
* * ÷ NC_000913 3358915 3359014 100 2 [1] [1] 2 gltB glutamate synthase subunit GltB
* * ÷ NC_000913 3371248 3371486 239 3 [1] [1] 2 nanT N‑acetylneuraminate:H(+) symporter
* * ÷ NC_000913 3419474 3419539 66 2 [1] [1] 2 yhdV/yhdX lipoprotein YhdV/putative ABC transporter membrane subunit YhdX
* * ÷ NC_000913 3423895–3424233 3424462–3424239 7–568 2 [1] [1] 2 rrlD 23S ribosomal RNA
* * ÷ NC_000913 3459867 3459965 99 2 [0] [1] 2 gspF Type II secretion system protein GspF
* * ÷ NC_000913 3461912 3461936 25 4 [1] [1] 2 gspH Type II secretion system protein GspH
* * ÷ NC_000913 3530105 3530182 78 2 [1] [1] 2 hslO molecular chaperone Hsp33
* * ÷ NC_000913 3539361 3539435 75 2 [1] [1] 2 yhgF putative RNA‑binding protein YhgF
* * ÷ NC_000913 3547676 3547825 150 2 [1] [1] 2 gntT high‑affinity gluconate transporter
* * ÷ NC_000913 3570362 3570474 113 2 [1] [1] 2 glgX limit dextrin alpha‑1,6‑glucohydrolase
* * ÷ NC_000913 3582437 3582473 37 2 [1] [1] 2 yhhZ putative endonuclease YhhZ
* * ÷ NC_000913 3594237 3594287 51 2 [1] [1] 2 livM branched chain amino acid/phenylalanine ABC transporter membrane subunit LivM
* * ÷ NC_000913 3626307 3626550 244 2 [1] [1] 2 yhhJ ABC transporter family protein YhhJ
* * ÷ NC_000913 3638990 3639175 186 2 [1] [1] 2 [pitA] [pitA]
* * ÷ NC_000913 3730147 3730341 195 2 [1] [1] 2 xylA xylose isomerase
* * ÷ NC_000913 3732255 3732363 109 2 [1] [1] 2 xylG xylose ABC transporter ATP binding subunit
* * ÷ NC_000913 3780973 3781183 211 2 [1] [1] 2 [lldD] [lldD]
* * ÷ NC_000913 3782869 3782956 88 2 [1] [1] 2 gpsA glycerol‑3‑phosphate dehydrogenase
* * ÷ NC_000913 3797070 3797136 67 2 [1] [1] 2 waaL O‑antigen ligase
* * ÷ NC_000913 3819437 3819514 78 2 [1] [1] 2 [yicG]–[ligB] [yicG],[ligB]
* * ÷ NC_000913 3826516 3826607 92 2 [1] [1] 2 recG ATP‑dependent DNA helicase RecG
* * ÷ NC_000913 3874578 3874685 108 2 [1] [1] 2 dgoR DNA‑binding transcriptional regulator DgoR
* * ÷ NC_000913 3908422 3908554 133 2 [1] [1] 2 [pstA] [pstA]
* * ÷ NC_000913 3931491 3931635 145 2 [1] [1] 2 kup K(+):H(+) symporter Kup
* * ÷ NC_000913 3986516 3986656 141 2 [1] [1] 2 [glmZ] [glmZ]
* * ÷ NC_000913 4065278 4065335 58 2 [1] [1] 2 yihO putative sulfoquinovose transporter
* * ÷ NC_000913 4070486 4070558 73 2 [1] [1] 2 [yihS] [yihS]
* * ÷ NC_000913 4085885 4085921 37 2 [0] [1] 2 fdoG/fdhD formate dehydrogenase O subunit alpha/sulfurtransferase for molybdenum cofactor sulfuration
* * ÷ NC_000913 4218372 4218389 18 2 [1] [1] 2 aceA isocitrate lyase
* * ÷ NC_000913 4235110 4235176 67 2 [1] [1] 2 pgi glucose‑6‑phosphate isomerase
* * ÷ NC_000913 4270967 4271085 119 2 [1] [1] 2 [yjbR]–[uvrA] [yjbR],[uvrA]
* * ÷ NC_000913 4314244 4314329 86 2 [1] [1] 2 yjdP/phnP protein YjdP/5‑phospho‑alpha‑D‑ribosyl 1,2‑cyclic phosphate phosphodiesterase
* * ÷ NC_000913 4327824 4327906 83 2 [1] [1] 2 rdcA regulator of diguanylate cyclase RdcA
* * ÷ NC_000913 4354744 4354887 144 2 [1] [1] 2 lysU/dtpC lysine‑‑tRNA ligase/Ap4A synthetase/Ap3A synthetase/dipeptide/tripeptide:H(+) symporter DtpC
* * ÷ NC_000913 4379635 4379721 87 2 [1] [1] 2 frdC fumarate reductase membrane protein FrdC
* * ÷ NC_000913 4413352 4413376 25 2 [1] [1] 3 yjfC putative acid‑‑amine ligase YjfC
* * ÷ NC_000913 4492257 4492318 62 2 [1] [1] 2 idnT L‑idonate/5‑ketogluconate/gluconate transporter
* * ÷ NC_000913 4493065 4493191 127 2 [1] [1] 2 idnO 5‑keto‑D‑gluconate 5‑reductase
* * ÷ NC_000913 4523934 4523983 50 2 [0] [1] 2 yjhG D‑xylonate dehydratase
* * ÷ NC_000913 4530460 4530609 150 2 [0] [1] 2 [sgcB]–[sgcX] [sgcB],[sgcX]
* * ÷ NC_000913 4533482 4533506 25 2 [0] [1] 2 yjhQ putative acetyltransferase TopAI antitoxin YjhQ
* * ÷ NC_000913 4533663 4533717 55 2 [1] [1] 2 yjhQ putative acetyltransferase TopAI antitoxin YjhQ
* * ÷ NC_000913 4562923 4562966 44 2 [1] [1] 2 yjiK PF06977 family protein YjiK

Unassigned new junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 12078052 (0.270)4 (0.600) 4/296 0.3 67.8% coding (305/630 nt) ycfK protein StfP
?NC_000913 = 1209602 2 (0.300)intergenic (‑483/‑83) tfaE/pinE putative tail fiber assembly protein TfaE/site‑specific DNA recombinase