Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_000913	3461912	3461936	25	4 [1]	[1] 2	gspH	Type II secretion system protein GspH

CTCATGGCCCCTGGATCAAACGCTCGCCAGAGATACCCGCCCATGAACAAACAATCAGGGATGACACTGCTTGAAGTCTTACTGGCGATGAGTATTTTCACCGCTGTTGCTCTGACTTTAATGAGCAGTATGCAAGGGCAACGAAATGCCATCGAGCGAATGCGTAACGAGACGCTGGCATTGTGGATAGCGGATAACCAGCTTCAGTCACAAGATTCATTCGGCGAGGAAAACA  >  NC_000913/3461932‑3462166      |                                                                                                                                                                                                                                      cTCATGGCCCCTGGATCAAACGCTCGCCAGAGATACCCGCCCATGAACAAACAATCAGGGATGACACTGCTTGAAGTCTTACTGGCGATGAGTATTTTCACCGCTGTTGCTCTGACTTTAATGAGCAGTATGCAAGGGCAACGAAATGCCATCGAGCGAATGCGTAACGAGACGCTGGCATTGTGGATAGCGGATAACCAGCTTCAGTCACAAGATTCATTCGGCGAGGAAAaca  >  1:104846/1‑235 (MQ=255)      ggCCCCTGGATCAAACGCTCGCCAGAGATGCCCGCCCATGAACAAACAATCAGGGATGACACTGCTTGAAGTCTTACTGGCGATGAg                                                                                                                                                 <  1:86841/87‑1 (MQ=255)      |                                                                                                                                                                                                                                      CTCATGGCCCCTGGATCAAACGCTCGCCAGAGATACCCGCCCATGAACAAACAATCAGGGATGACACTGCTTGAAGTCTTACTGGCGATGAGTATTTTCACCGCTGTTGCTCTGACTTTAATGAGCAGTATGCAAGGGCAACGAAATGCCATCGAGCGAATGCGTAACGAGACGCTGGCATTGTGGATAGCGGATAACCAGCTTCAGTCACAAGATTCATTCGGCGAGGAAAACA  >  NC_000913/3461932‑3462166

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑