Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_000913	2559304	2559359	56	2 [1]	[1] 2	intZ	putative phage integrase IntZ

GAAGAAAGAACGTACCGCACCGGAGCAGGCCCGCAAGCTACGCCGGCGCATCGGTGAGATCTTCAAGTTTGCCGTTATCACCGAACTGGTAACGAGGAATCCGGTTGCAGATCTTGATACGGCACTGAAGGCCCGCCGACCTGGTCACAACGCGTGGATACCGATTAGTGAAATTCCGGCCTTCTACAAAGCCCTTGAGAGGGCCGGGAGCGTCCAGATTCAGACGGCAATACGTTTGCTTATATTAACGGCATTAAGGACCGCAGAACTGCGTTTGTGC  >  NC_000913/2559331‑2559610                              |                                                                                                                                                                                                                                                           gaagaaAGAACGTACCGCACCGGAGCAGGCCCGCAAGCTACGCCGGCGCATCGGTGAGATCTTCAAGTTTGCCGTTCTCACCGACCTGGTAACGAGGAATCCGGTTGCAGATCTTGCTACGGCACTGAAGGCCCGCCGACCTGGTCACTACGCGTGGATACCGATTAGTGAAATTCCGGCCTTCTACAAAGCCCTTGAGAGGGCCGGGAGCGTCCAGATTCAGACGGCAATACGTTTGCTTATATTAACgg                               >  1:160408/1‑251 (MQ=255)                              cccGCACGCTACGCCGGCGCATCGGTGAGATCTTCAAGTTTGCCGTTATCACCGAACTGGTAACGAGGAATCCGGTTGCAGATCTTGATACGGCACTGAAGGCCCGCCGACCTGGTCACAACGCGTGGATACCGATTAGTGAAATTCCGGCCTTCTACAAAGCCCTTGAGAGGGCCGGGAGCGTCCAGATTCAGACGGCAATACGTTTGCTTATATTAACGGCATTAAGGACCGCAGAACTGCGTTTGTGc  >  1:34841/1‑251 (MQ=255)                              |                                                                                                                                                                                                                                                           GAAGAAAGAACGTACCGCACCGGAGCAGGCCCGCAAGCTACGCCGGCGCATCGGTGAGATCTTCAAGTTTGCCGTTATCACCGAACTGGTAACGAGGAATCCGGTTGCAGATCTTGATACGGCACTGAAGGCCCGCCGACCTGGTCACAACGCGTGGATACCGATTAGTGAAATTCCGGCCTTCTACAAAGCCCTTGAGAGGGCCGGGAGCGTCCAGATTCAGACGGCAATACGTTTGCTTATATTAACGGCATTAAGGACCGCAGAACTGCGTTTGTGC  >  NC_000913/2559331‑2559610

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑