mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.39.0
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,636,074 | 0 | C | T | 47.1% | 2.2 / 17.3 | 17 | E98E (GAG→GAA) | nohA | putative prophage DNA‑packaging protein NohA |
| * | NC_000913 | 1,636,068 | 0 | T | C | 46.7% | ‑2.1 / 17.2 | 15 | K100K (AAA→AAG) | nohA | putative prophage DNA‑packaging protein NohA |
| * | NC_000913 | 566,173 | 0 | C | G | 45.5% | ‑2.1 / 14.6 | 11 | intergenic (‑195/‑511) | intD/renD | putative integrase/protein RenD |
| * | NC_000913 | 566,205 | 0 | T | C | 45.5% | ‑4.7 / 10.3 | 11 | intergenic (‑227/‑479) | intD/renD | putative integrase/protein RenD |
| * | NC_000913 | 1,429,702 | 0 | A | C | 30.0% | 8.6 / 14.0 | 20 | A218A (GCA→GCC) | stfR | putative prophage side tail fiber protein StfR |
| * | NC_000913 | 1,429,714 | 0 | A | C | 30.0% | 11.0 / 13.8 | 20 | A222A (GCA→GCC) | stfR | putative prophage side tail fiber protein StfR |
| * | NC_000913 | 1,429,682 | 0 | T | G | 28.6% | 17.0 / 10.1 | 21 | S212A (TCA→GCA) | stfR | putative prophage side tail fiber protein StfR |
| * | NC_000913 | 1,429,692 | 0 | T | A | 28.6% | 21.1 / 10.4 | 21 | L215Q (CTA→CAA) | stfR | putative prophage side tail fiber protein StfR |