Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_000913	2559304	2559359	56	2 [1]	[1] 2	intZ	putative phage integrase IntZ

CAAAGAAGCACGCAGGCGCGCCACGGAGAGCAGATCCCTTATTGCCAATGGAATTAACCCAGTGGAACAAGCCCGCAAGGAAAAAGCCATTGATGCGCTCAACATGGCGGCAGGATTTAAGAAGGTGGCGGAAGACTGGTTTGCTACCAGGGTTGGAGGGTGGTCGGAATCCTATGCAAAACAGGTCAGATCGGCAC‑TAGAAAAAGACGTCTATCCGGTACTTGGCAAGCGGTCGATTGTCGATATAACCGCCCGTGACGTGCTGGCATTACTCC  >  NC_000913/2559055‑2559329                                                                                                                                                                                                                                                          |                           cAAATAAGCACGCAGGCGCGCCACGGAGAGCATATCCCTTATTGCCAATGGAAATAACCCAGTGGAACAAGCCCGCAAGGAAAAAGCCATTGATGCGCACAACATGGCGGCAGGATTTAAGAAGGTGGCGGAAGACTGTTTTGCTACCAGGGTTGGAGGGTGGTCCGAATCCGATGCAAAACTGGTCATAGCGGCAC‑TAGAAAAAGACTTCTATCCGGGACGTGGCGAGCTGTCGATTGTCGATATAAc                            <  1:134997/249‑1 (MQ=255)                          nagagCAGATCCCTTCTTGACAATGGAATTAACCCAGTGGACCAAGCCCGCAAGGCAAAAGACATTGCTGGGCTCAACATGACGGCAGGATTTAAGAAGGTTGCGGACGACTGGTTTGCTACCAGGGTTGGAGGGGGGTCGGAATCCTATGCAAAACAGGTCAGATCGG‑ACATAGAAAAAGAAGTCTATCCGGTACTTGGCAAGCGGTCGATTGTCGATATAACCGCCCGTGACGTGCGGGGATTACTcc  >  1:28510/2‑250 (MQ=255)                                                                                                                                                                                                                                                          |                           CAAAGAAGCACGCAGGCGCGCCACGGAGAGCAGATCCCTTATTGCCAATGGAATTAACCCAGTGGAACAAGCCCGCAAGGAAAAAGCCATTGATGCGCTCAACATGGCGGCAGGATTTAAGAAGGTGGCGGAAGACTGGTTTGCTACCAGGGTTGGAGGGTGGTCGGAATCCTATGCAAAACAGGTCAGATCGGCAC‑TAGAAAAAGACGTCTATCCGGTACTTGGCAAGCGGTCGATTGTCGATATAACCGCCCGTGACGTGCTGGCATTACTCC  >  NC_000913/2559055‑2559329

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑