mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.39.0
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| MC JC | 257,908 | Δ776 bp | insB9–[crl] | insB9, insA9, [crl] | |
| RA | 309,381 | C→T | D216N (GAT→AAT) | ecpB ← | putative fimbrial chaperone EcpB |
| RA | 309,985 | T→A | G14G (GGA→GGT) | ecpB ← | putative fimbrial chaperone EcpB |
| RA | 321,260 | A→T | intergenic (+179/‑348) | rclR → / → ykgE | DNA‑binding transcriptional activator RclR/putative lactate utilization oxidoreductase YkgE |
| MC JC | 1,978,503 | Δ776 bp | insB5–insA5 | insB5, insA5 | |
| JC JC | 1,995,620 | IS5 (–) +4 bp | intergenic (‑261/‑32) | uvrY ← / → yecU | DNA‑binding transcriptional activator UvrY/protein YecU |
| RA | 2,173,363 | Δ2 bp | intergenic (‑490/+918) | gatD ← / ← gatB | galactitol‑1‑phosphate 5‑dehydrogenase/galactitol‑specific PTS enzyme IIB component |
| RA | 3,560,455 | +G | intergenic (+589/+167) | rtcR → / ← glpG | DNA‑binding transcriptional activator RtcR/rhomboid protease GlpG |
| RA | 4,296,381 | +GC | intergenic (+587/+55) | gltP → / ← yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 354596 | 354659 | 64 | 117 [0] | [31] 32 | prpE/codB | propionyl‑CoA synthetase/cytosine transporter |
| * | * | ÷ | NC_000913 | 361657 | 362203 | 547 | 100 [0] | [0] 94 | [lacA]–[lacY] | [lacA],[lacY] |
| * | * | ÷ | NC_000913 | 3423891–3424232 | 3424452–3424238 | 7–562 | 32 [31] | [31] 32 | rrlD | 23S ribosomal RNA |
| * | * | ÷ | NC_000913 | 3883253 | 3883537 | 285 | 32 [31] | [31] 33 | dnaA | chromosomal replication initiator protein DnaA |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 19796 = | NA (NA) | 100 (1.080) | 61/584 | 0.2 | 100% | noncoding (768/768 nt) | IS1 | repeat region |
| ? | NC_000913 | = 361656 | 0 (0.000) | coding (205/612 nt) | lacA | galactoside O‑acetyltransferase | |||||
| * | ? | NC_000913 | 70062 = | 108 (1.170) | 95 (1.110) +22 bp |
57/542 | 0.2 | 52.3% | intergenic (‑14/‑325) | araB/araC | ribulokinase/DNA‑binding transcriptional dual regulator AraC |
| ? | NC_000913 | = 367520 | 79 (0.850) | intergenic (‑10/+67) | lacI/mhpR | DNA‑binding transcriptional repressor LacI/DNA‑binding transcriptional activator MhpR | |||||
| * | ? | NC_000913 | = 71265 | 87 (0.940) | 117 (1.260) | 60/586 | 0.2 | 72.9% | coding (879/879 nt) | araC | DNA‑binding transcriptional dual regulator AraC |
| ? | NC_000913 | = 354595 | 0 (0.000) | intergenic (+3/‑327) | prpE/codB | propionyl‑CoA synthetase/cytosine transporter | |||||
| * | ? | NC_000913 | = 258675 | NA (NA) | 93 (1.000) | 59/586 | 0.2 | 100% | noncoding (1/768 nt) | IS1 | repeat region |
| ? | NC_000913 | 362204 = | 0 (0.000) | coding (976/1254 nt) | lacY | lactose permease | |||||
| * | ? | NC_000913 | 1207790 = | 28 (0.300) | 73 (0.830) | 42/554 | 0.8 | 72.5% | coding (290/630 nt) | ycfK | protein StfP |
| ? | NC_000913 | 1209619 = | 29 (0.330) | intergenic (‑500/‑66) | tfaE/pinE | putative tail fiber assembly protein TfaE/site‑specific DNA recombinase | |||||
| * | ? | NC_000913 | = 1207805 | 25 (0.270) | 44 (0.500) | 33/554 | 1.4 | 62.6% | coding (305/630 nt) | ycfK | protein StfP |
| ? | NC_000913 | = 1209602 | 29 (0.330) | intergenic (‑483/‑83) | tfaE/pinE | putative tail fiber assembly protein TfaE/site‑specific DNA recombinase | |||||
| * | ? | NC_000913 | = 1299498 | 0 (0.000) | 149 (1.630) | 89/578 | 0.0 | 100% | intergenic (+253/‑69) | ychE/insH21 | MarC family putative inner membrane protein YchE/IS5 family transposase and trans‑activator |
| ? | NC_000913 | 1300698 = | 0 (0.000) | intergenic (+151/‑484) | insH21/oppA | IS5 family transposase and trans‑activator/oligopeptide ABC transporter periplasmic binding protein | |||||