| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 579,811 | 0 | C | T | 59.1% | 5.2 / 13.5 | 22 | intergenic (‑217/‑69) | ybcV/ybcW | DUF1398 domain‑containing protein YbcV/uncharacterized protein YbcW |
| Reads supporting (aligned to +/- strand): ref base C (3/6); new base T (5/8); total (8/14) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.81e-01 | |||||||||||
| Rejected as consensus: E-value score below prediction cutoff. | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
TTCTTTAAAAATGGCAACCTGAGCCATTGGTAAAACCTTCCATGTGATACGAGGGCGCGTAGTTTGCATTATCGTTTTTATCGCTTCAATCTGGTCTGACCTCTTTGTGTTTTGTTGATGATTTATGTCAAATATTAGGAATGTTTTCAATTAATAGTATTGGTTGCGTAACAAAGTGCGGTCCTGCTGGCATTCTGGAGGGAAATACAACCGACAGATGTATGTAAGGCCAACGTGCTCAAAC‑CTTCATACAGAAAGATTTGAAGTAATATTTTAACCGCTAGATGAAGAGCAAGCGCATGGAGCGACAAAATGAATAAAGAACAATCTGCTGATGATCCCTCCGTGGATCTGATTCGTGTAAAAAATATGCTTAATAGCACCATTTCTATGAGTTACCCTGATGTT‑GTAATTGCATGTATAGAACATAAGGTGTCTCTGGAAGCATTCAGGGCAATTGAGGCAG > NC_000913/579568‑580033 | ttCTTTAAAAATGGCAACCTGAGCCATTGGTAAAACCTGCCATGTGATACGAGGGCGCGTAGTTTGCATTATCGTTTTTATCGCTTCAATCTGGTCTGACCTCTTTGTGTTTTGTTGATGATTTATGTCAAATATTAGGAATGTTTTCAATTAATAGTATTGGTTGCGTAACAAAGTGCGGTCCTGCTGGCATTCTGGAGGGAAATACAACCGACAGATGTATGTAAGGCCAACGTGCTCAAAC‑CTTCAt < 1:147127/250‑1 (MQ=255) atctgCCATTGGTAAAACCTTCCATGTGATACGAGGGCGCGTAGTTTGCATTATCGTTTTTATCGTTTCAATCTGGTCTGACCTCCTTGTGTTTTGTTGATGATTTATGTCAAATATTAGGAATGTTTTCTCTTAATAGTATTGGTTGCGTAACAAAGTGCGGTCCTGCTGGCATTCTGGAGGGAAATACAACCGACATATGTATGTAAGTCCAACGTGCTCAAAT‑CTTCATACAGAAAGATTTGAAgn < 1:50665/245‑2 (MQ=255) tGCATTATCGTTTTTATCGTTTCAATCTGGTCTGACCTCCTTGTGGTTTGTTGATGATTTACGTTAAATATTCGGAATGTTTTCGCTTCACAGTATTGGTTGCGTAACACATTGCGGTCCTGCTGGCATTCTCGAGGGAACTACAACCGAAAGCTGTATGTCCGAAAAACGAGCCCACAT‑CCTCCTACAGAAAGCTTTGAAGAAATCTTTTAACCGCTAGATGAAGAGCAAGCCCAAGGAGCGACAAAAt > 1:236165/1‑250 (MQ=255) aTTATCGTTTTTATCGTTTCAATCTGGACTGACCTCCTTGGGTTTTGTTAGTGATTTATGTAAAATATTAGGAATGTTTTCAATTAATAGTATTGGTTGCGTTACAAAGAGCGGTCCTGCTGGCCTTCTGGAGGGAAATACAACCGACAGATGTATGTAAGGCCAACGTGCTCAAAT‑ATTCATACAGAAAGATTTGAAGTAATATTTTAACCGCTAGATGAAGAGCAAACGCATGGAGAGACAAAATGAAt > 1:99972/1‑251 (MQ=255) gCTTCAATCTGGTCTGACCTCTTTGTGTTTTGTTGATGATTTATGTCAAATATTAGGAATTTTTTCAATTAATAGTATTGGTTGCGGAACAAAGTGCGGTCCTGCTGGCATTCTGGAGGGAAATACAACCGACAGATGTATGTAAGGCCAACGTGCTCAAAC‑CTTCATACAGAAAGATTTGAAGTAATATTTTAACCGCTAGATGAAGAGCAAGCGCATGGAGCGACAAAATGAATAAAGAACAATctgct < 1:236990/251‑1 (MQ=255) tGGTCTGACCTCTTTGTGTTTTGTTGATGATTTATGTCAAATATTAGGAATGTTTTCAATTAATAGTATGGGTTGCGTAACAAAGTGCGGTCCTGCTGGCATTCTGGAGGGAAATACAACCGACAGATGTATGTAAGGCCAACGTGCTCAAAC‑CTTCATACAGAAAGATTTGAAGTAATATTTTAACCGTTAGATGAAGAGCAAGCGCATGGAGc < 1:208456/215‑1 (MQ=255) ggTCTGACCTCTTTGTGTTTTGTTGATGATTTATGTCAAATATTAGGAATGTTTTCAATTAATAGTATGGGTAGCGTAACAAAGTGCGGTCCTGCTGGCATTCTGGAGGGAAATACAACCGACAGATGGATGTAAGGCCAACGTGCTCAAAC‑CTTCATACAGAAAGATTTGAAGTAATATTTTAACCGCGAGATGAATAGCAAGCGCATGAAGCGACAAAATGAATAAAGAACAATCTGCTgatgatn < 1:55345/248‑2 (MQ=255) ccttGTGTTTTGTTGATGATTTATGTCAAATATTAGGAATGTTTTCACTTAATAGTATTGGTTGCGTAACAAAGTGCGGTCCTGCTGGCATTCTGGAGGGAAATACAACCGACAGATGTATGTAAGGCCAACGTGCTCAAAT‑CTTCATACAGAAAGATTTGAAGTAATATTTTAACCGCTAGATGAAGAGCAAGCGCATGGAGCGACAAAATGAATAAAGAACAATCTGCTGATGATCCCTCCGTGGATc < 1:18547/248‑1 (MQ=255) ccttGTGTTTTGTTGATGATTTATGTCAAATATTAGGAATGTTTTCACTTAATAGTATTGGTTGCGTAACAAAGTGCGGTCCTGCTGGCATTCTGGAGGGAAATACAACCGACAGATGTATGTAAGGCCAACGTGCTCAAAT‑CTTCATACAGAAAGATTTGAAGTAATATTTTAACCGCTAGATGAAGAGCAAGCGCATGGAGCGACAAAATGAATAAAGAACAATCTGCTGATGATCCCTCCGTGGANc < 1:198421/248‑1 (MQ=255) tggtgatgaTTTATGTCAAATATTAGGAATGTTTTCACCTAATAGTATTGGGTGCGTAACAAAGTGAGGTTCTGCTGGCATTCTGGAGGGAAATACAAACGACAGATGTCTGTAAGGCCACAGTGCTCAAAT‑CTTCCTAc > 1:129154/4‑140 (MQ=255) ttATGTCAAATATTAGGAATGTTTTCACTTAATAGGATTGGTTGCGTAACAAAGGGCGGTCCTGCTGGCATTCTGGAGGGAAATACAACCGACAGATGTATGTAAGGCCAACGTGCTCAAAT‑CTTCAGACAGAAAGATTTGAAGTAATATTTTAACCGCTAGATGAAGAGCAAGCGCATGGAGCGACAAAATGAATAAAGAACAATCTGCTGATGATCCCTCCGTGGATCTGATTCGTGTAAAAAATATg < 1:194234/250‑1 (MQ=255) atTAGGAATGTTTTCACTTAATAGTATTGGTTGCGTAACAAAGTGCGGTCCTGCTGGCATTCTGGAGGGAAATACAACCGACAGATGTATGTAAGGCCAACGTGCTCAAAT‑CTTCATACAGAAAGATTTGAAGTAATATTTTAACCGCTAGATGAAGAGCAAGCGCATGGAGCGACAAAATGAATAAAGAACAATCTGCTGATGATCCCTCCGTGGATCTGATTCGTGTAAAAAATATGCTTAATAGCAcc < 1:122800/251‑1 (MQ=255) nggNATGNTNNCNNTTANTAGTATTGGTTGCGTAACAAANNGCGGTCCTGNTGGCATTCTGGAGGGAAATACAACCGACAGATGTATGTAAGGCCAACGTGCTCNAAT‑CTTCATNNAGNAAGAGNTNNNGNNNTANTTTAACCGCTAGATGAAGANCANNCGCATGNAGCGACAAAATGAATAAAGAACAATc < 2:62614/192‑1 (MQ=255) gTAACAAAGTGCGGTCCTGCTGGCCTTCTGGAGGGAAATACAACCGACAGATGTGTGTAAGGAAAACGAGAT‑AAACTCTTCATACAGAAAGATTTGAAGTAATATTTTCACCGCTAGATGAAGCGCAAGCGCATGGAGCGACAAAATGAAAAAAGAACAATCTGCTGCTGATCCCTCCGTGGATCTGATTCGTGTAAAAAATATGCTTAATACCACCATTTCCCTGAGTTACCCTGATGTT‑GTAATTGCAt > 1:43436/1‑251 (MQ=255) gTAACAAAGTGCGGTCCTGCTGGCATTCTGGAGGGAAATAAAACCGACAGATGTATGTAAGGCCAACGTGCTCAAAT‑CTTAATACAGAAAGATTTGAAGTAATATTTTAACCGCTAGATGAAGAGCAAGCGCATGGAGCGACAAAATGAATAAAGAACAATCTGCTGATGATCCCTCCGTGGATCTGATTCGTGTAAAAAATATGCTTAATAGCACCATTTCTATGAGTTACCCTGCTGTT‑GTAATTGCAt > 1:43439/1‑251 (MQ=255) ccTGCTGGCATTCTGGAGGGAAATACAACCGACAGATGTATGTAAGGCCAACGTGCTCAACC‑CTTCATACAGAAAGATTTGAAGTAATATTTTAACCGCTAGATGAAGAGCAAGCGCATGGAGCGACAAAATGAATAAAGAACAATCTGCTGATGATCCCTCCGTGGATCTGATTCg > 1:135875/1‑177 (MQ=255) ggCATTCTGGCGGGAAATACAACCGACAGATGTATGTAAGGCCAACGTGCTCCAAT‑CTTAATACAGAAAGATTTGAAGTAATATTTTAACCGCTAGATGAAGAGCAAGCGCATGGAGCGACAAAATGAATAAAGAACAATCTGCtgatg > 1:175146/1‑149 (MQ=255) ggCAGTCTGGAGGGAAATACAACCGACAGATGTATGTAAGGCCAACGTGCTCAAAT‑CTTCNTACNGAAANATNTGAAGTAATATGTTANCCGCTAGATGAAGAGCAAGCGCATGGAGCGACAAAATGAATAAANNANNNTNTGCtgatg < 2:175146/149‑1 (MQ=255) gACAGATGTATGTAAGGCCAACGTGCTCAAAC‑CTTCATACAGAAAGATTTGAAGTAATATTTTAACCGCTAGATGAAGAGCAAGCGCATGGAGCGACAAAATGAATAAAGAACAATCTGCtga > 1:132289/1‑123 (MQ=255) aGATGTATGTAAGGCCATCGTGCTCAAAC‑CGTCATACAGAAAGATGTGAAGTAATATTTTAACCGCTAGATGAAGAGCAAGCTCATGGAGCGACAAAATGAATAATGAACAATCTGCTGATGATCGCTCCGTGGATCTGATTCGTGTAAAAAATATGCTTAATAGCGCCATTGCTATGAGTTACCCTG‑TGTTTGTAATTGCATGTATAGAACATAAGGTGTCTCTGGAAGCATTCAGGGCAATTGAGGCAg < 1:235982/251‑1 (MQ=255) gtaAGGCCAACGTGCTCAAAC‑CTTCATACAGAAAGATTTGAAGTAATATTTTAACCGCTAGATGAAGAGCAAGCGCATGGAGCGACAAAATGAATAAAGAACAATCTGCTGATGATCCCTCCGTGGATCTGATTCGTGTAAAAAATATGCTTAATAGCACCATTTCTATGAGTTACCCTGATGTT‑GTAATTGCATGTATAGAACATAAGGTGTCTCTGGAAGCATTCAggn < 1:31472/231‑2 (MQ=255) gCTCAAAT‑CTTCATACAGAAAGATTTGAAGTAATATTTTAACCGCTAGATGAAGAGCAAGCGCATGGAGCGACAAAATGAATAAAGAACAATCTGCTGATGATCCCTCCGTGGATCTGATTCGTGTAAAAAATATGCTTAATAGCACCATTTCTATGAGTTACCCTGATGTT‑GTAATTGCATGTATAGAACATAAGGGGTCTCTGGAAg < 1:84554/209‑1 (MQ=255) | TTCTTTAAAAATGGCAACCTGAGCCATTGGTAAAACCTTCCATGTGATACGAGGGCGCGTAGTTTGCATTATCGTTTTTATCGCTTCAATCTGGTCTGACCTCTTTGTGTTTTGTTGATGATTTATGTCAAATATTAGGAATGTTTTCAATTAATAGTATTGGTTGCGTAACAAAGTGCGGTCCTGCTGGCATTCTGGAGGGAAATACAACCGACAGATGTATGTAAGGCCAACGTGCTCAAAC‑CTTCATACAGAAAGATTTGAAGTAATATTTTAACCGCTAGATGAAGAGCAAGCGCATGGAGCGACAAAATGAATAAAGAACAATCTGCTGATGATCCCTCCGTGGATCTGATTCGTGTAAAAAATATGCTTAATAGCACCATTTCTATGAGTTACCCTGATGTT‑GTAATTGCATGTATAGAACATAAGGTGTCTCTGGAAGCATTCAGGGCAATTGAGGCAG > NC_000913/579568‑580033 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |