mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.39.0
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 766,716 | 0 | G | T | 40.9% | ‑3.9 / 13.1 | 22 | A245S (GCG→TCG) | mngA | 2‑O‑alpha‑mannosyl‑D‑glycerate specific PTS enzyme II |
| * | NC_000913 | 2,296,764 | 0 | T | G | 33.7% | 148.7 / 13.4 | 88 | L87F (TTA→TTC) | ccmB | cytochrome c maturation protein B |
| * | NC_000913 | 4,171,557 | 0 | C | G | 32.0% | 62.6 / 55.3 | 51 | intergenic (+13/‑80) | rrlB/rrfB | 23S ribosomal RNA/5S ribosomal RNA |
| * | NC_000913 | 619,308 | 0 | T | G | 31.4% | 103.5 / 10.2 | 72 | V352G (GTG→GGG) | fepE | polysaccharide co‑polymerase family protein FepE |
| * | NC_000913 | 4,351,751 | 0 | A | G | 28.6% | 92.9 / 11.0 | 49 | intergenic (‑89/‑92) | dcuS/yjdI | sensor histidine kinase DcuS/PF06902 family protein YjdI |
| * | NC_000913 | 93,683 | 0 | T | G | 28.2% | 156.5 / 12.0 | 89 | V173G (GTG→GGG) | murE | UDP‑N‑acetylmuramoyl‑L‑alanyl‑D‑glutamate‑‑2, 6‑diaminopimelate ligase |
| * | NC_000913 | 3,813,272 | 0 | C | T | 28.1% | 32.1 / 11.7 | 32 | S181L (TCG→TTG) | dfp | fused 4'‑phosphopantothenoylcysteine decarboxylase and phosphopantothenoylcysteine synthetase |
| * | NC_000913 | 989,959 | 0 | A | C | 27.6% | 66.2 / 11.9 | 65 | V133G (GTA→GGA) | pncB | nicotinate phosphoribosyltransferase |
| * | NC_000913 | 815,840 | 0 | T | C | 26.6% | 116.5 / 10.3 | 66 | I270V (ATT→GTT) | ybhK | putative transferase YbhK |
| * | NC_000913 | 4,296,268 | 0 | T | C | 25.9% | 46.0 / 13.6 | 29 | intergenic (+474/+168) | gltP/yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| * | NC_000913 | 2,332,823 | 0 | A | G | 23.0% | 195.4 / 10.1 | 87 | intergenic (‑3026/+1513) | yfaQ/yfaT | tandem DUF2300 domain‑containing protein YfaQ/DUF1175 domain‑containing protein YfaT |
| * | NC_000913 | 119,396 | 0 | C | T | 20.3% | 121.8 / 11.3 | 59 | S39F (TCT→TTT) | ampE | protein AmpE |
| * | NC_000913 | 4,257,770 | 0 | C | T | 20.0% | 148.2 / 10.8 | 65 | S10L (TCA→TTA) | dinF | DNA damage‑inducible protein F |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1836317 = | 81 (1.110) | 3 (0.040) +C |
3/490 | 5.5 | 4.2% | coding (245/1167 nt) | ynjB | putative ABC transporter periplasmic binding protein YnjB |
| ? | NC_000913 | = 2508495 | 56 (0.770) | coding (932/966 nt) | glk | glucokinase | |||||
| * | ? | NC_000913 | = 1740750 | 85 (1.170) | 3 (0.040) | 3/490 | 5.5 | 4.2% | coding (840/1212 nt) | punC | purine nucleoside transporter PunC |
| ? | NC_000913 | = 4127302 | 51 (0.700) | coding (593/609 nt) | yiiX | putative lipid‑binding hydrolase YiiX | |||||