| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,351,751 | 0 | A | G | 28.6% | 92.9 / 11.0 | 49 | intergenic (‑89/‑92) | dcuS/yjdI | sensor histidine kinase DcuS/PF06902 family protein YjdI |
| Reads supporting (aligned to +/- strand): ref base A (4/31); new base G (14/0); total (18/31) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.53e-09 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
CGCGTCATATCACTGATTTGCGAGAAGTAAATCAGATGCACCACCAATAGCACCGAGAACAGTACCGCACTGACCATTAAGATCACTGTGGTACTCAATTTCATCGGACGTTTGCGTAACATGCGGTAGGGCAATGAATGTCTCATCAGCTTCCTTGTGTGACAAATTTCTTAAGCATTATCTCTGATGAGGCGGGTAA‑TTCAAA‑GGGAGTAAGAATGATTGGCTATAT‑AGGGGAAGAGA‑CT‑CTGGCAACGG‑AAACTGCCAGTGCTGTATGAAG‑ATTCC‑GGGG‑CTATGCTTATAGCGATAATCATACTGATGAGAGAGGGAAGGTCATGGATCAGGCGCTACTGGACGGGGG‑TTATCGCTGTTATACCGGCGAAAAGATCGATGTCTATTTCAACACTGCGATATGTCAGCATTCTGGCAATTGCGTACGTGGCAACGGCAAGTTATTTAATCTCAAACGAAAGCCGTGG > NC_000913/4351517‑4351986 | cgcgTCATATCACTGATTTGCGAGAAGTAAATCAGATGCACCACCAATAGCACCGAGAACAGTACCGCACTGACCATTAAGATCACTGTGGTACTCAATTTCATCGGACGTTTGCGTAACATGCGGTAGGGCAATGAATGTCTCATCAGCTTCCTTGTGTGACAAATTTCTTAAGCATTATCTCTGATGAGGCGGGTAA‑TTCAAA‑GGGAGTAAGAATGATTGGCTATAT‑AGGGGAAGAGA‑CT‑CTGGCAAc < 1:148107/250‑1 (MQ=255) cACTGATTTGCGAGAAGTAAATCAGATGCACCACCAATAGCACCGAGAACAGTACCGCACTGACCATTAAGATCACTGTGGTACTCAATTTCATCGGACGTTTGCGTAACATGCGGTAGGGCAATGAATGTCTCATCAGCTTCCTTGTGTGACAAATTTCTTAAGCATTATCTCTGATGAGGCGGGTAA‑TTCAAA‑GGGAGTAAGAATGATTGGCTATAT‑AGGGGAAGAGA‑CT‑CTGGCAACGG‑AAACTGCCa < 2:571246/251‑1 (MQ=255) gATTTGCGAGAAGTAAATCAGATGCACCACCAATAGCACCGAGAACAGTACCGCACTGACCATTAAGATCACTGTGGTACTCAATTTCATCGGACGTTTGCGTAACATGCGGTAGGGCAATGAATGTCTCATCAGCTTCCTTGTGTGACAAATTTCTTAAGCATTATCTCTGATGAGGCGGGTAAATTCAAG‑GGGGGAAAGA‑TGGTTTGCTTTTT‑AGGGGGAGAGAACT‑CTGGCAAGGG‑aaatggcagggc > 1:78044/1‑242 (MQ=255) gATTTGCGAGAAGTAAATCAGATGCACCACCAATAGCACCGAGAACAGTACCGCACTGACCATTAAGATCACTGTGGTACTCAATTTCATCGGACGTTTGCGTAACATGCGGTAGGGCAATGAATGTCTCATCAGCTTCCTTGTGTGACAAATTTCTTAAGCATTATCTCTGATGAGGCGGGTAA‑TTCAAA‑GGGAGTAAGAATGATTGGCTATAT‑AGGGGAAGAGA‑CT‑CTGGCAACGG‑AAACTGCCAGTGc < 2:132917/251‑1 (MQ=255) aaGTAAATCAGATGCACCACCAATAGCACCGAGAACAGTACCGCACTGACCATTAAGATCACTGTGGTACTCAATTTCATCGGACGTTTGCGTAACATGCGGTAGGGCAATGAATGTCTCATCAGCTTCCTTGTGTGACAAATTTCTTAAGCATTATCTCTGATGAGGCGGGGAA‑TTCAAA‑GGGAGTAAGAATGATTGGCTATAT‑AGGGGGAGAGA‑AT‑CTGGCAACGG‑AAAATGCCAGTGCTGTATGa > 1:524868/1‑248 (MQ=255) gTAAATCAGATGCACCACCAATAGCACCGAGAACAGTACCGCACTGACCATTAAGATCACTGTGTTACTCAAGATCATCGGACGTTTGCGTAACATGCGGTAGGGCAATGAATGTCTCATCAGCTTCCTTGTGTGACAAATTTCTTAAGCATTATCGCTGATGAGGCGGGTAA‑TTCAAA‑GGGAGTAAGAATGATTGGCTATAT‑AGGGGAAGAGA‑CT‑CTGGCAACGG‑AAACTGCCAGTGCTGTATGAAG‑Att < 2:548320/251‑1 (MQ=255) accaATAGCACCGAGAACAGTACCGCACTGACAATTAAGATCACTGTGGTACTCAATTTCATCGGACGTTTGCGTAACATGCGGTAGGGCAATGAATGTCTCATCAGCTTCCTTGTGTGACAAATTTCTTAAGCATTATCTCTGATGAGGCGGGTAA‑TTCAAA‑GGGAGTAAGAATGATTGGCTATAT‑AGGGGAAGAGA‑CT‑CTGGCAACGG‑AAACTGCCAGTGCTGTATGAAG‑ATTCC‑GGGG‑CTATGCTtat < 2:365403/251‑1 (MQ=255) aaTAGCACCGAGAACAGTACCGCACTGACCATTAAGATCACTGTGGTACTCAATTTCATCGGACGTTTGCGTAACATGCGGTAGGGCAATGAATGTCTCATCAGCTTCCTTGTGTGACAAATTTCTTAAGCATTATCTCTGATGAGGCGGGTAA‑TTCAAA‑GGGAGTAAGAATGATTGGCTATAT‑AGGGGAAGAGA‑CT‑CTGGCAACGG‑AAACTGCCAGTGCTGTATGAAG‑ATTCC‑GGGG‑CTATGCTTATAGc < 1:23217/251‑1 (MQ=255) gCACCGAGAACAGTACCGCACTGACCATTAAGATCACTGTGGTACTCAATTTCATCGGACGTTTGCGTAACATGCGGTAGGGCAATGAATGTCTCATCAGCTTCCTTGTGTGACAAATTTCTTAAGCATTATCTCTGATGAGGCGGGGAA‑TTCAAAAGGGGGTA‑GAATGGTTTGCGATAT‑ATGGGGAGGGA‑AC‑ATGGCAACGGGAAACT‑CCAGTGCCGTATGAAG‑ATTCCCGGGG‑C‑ACGCTTATAGCGAtt > 2:96656/1‑250 (MQ=255) aCCGAGAACAGTACCGCACTGACCATTAAGATCACTGTGGTACTCAATTTCATCGGACGTTTGCGTAACATGCGGTAGGGCAATGAATGTCTCATCAGCTTCCTTGTGTGACAAATTTCTTAAGCATTATCTCTGATGAGGCGGGTAA‑TTCAAA‑GGGAGTAAGAATGATTGGCTATAT‑AGGGGAAGAGA‑CT‑CTGGCAACGG‑AAACTGCCAGTGCTGTATGAAG‑ATTCC‑GGGG‑CTATGCTTATAGCGATAAt < 2:81548/251‑1 (MQ=255) aCCGAGAACAGTACCGCACTGACCATTAAGATCACTGTGGTACTCAATTTCATCGGACGTTTGCGTAACATGCGGTAGGGCAATGAATGTCTCATCAGCTTCCTTGTGTGACAAAGTTCTTAAGCATTATCTCTGATGAGGCGGGTAA‑TTCAAA‑GGGAGTAAGAATGATTGGCTATAT‑AGGGGAAGAGA‑CT‑CTGGCATCGG‑AAACTGCCAGTGCTGTATGAAG‑ATTCC‑GGGG‑CTATGCTTATAGCGATAAt < 2:188086/251‑1 (MQ=255) cgctcTGACCATTAAGATATCTGTTGTACTCAATGTCCACGGACGGTTTCGTAACATGCGGTAGGTCAATTAATGTCTCATCAGCGTCCTGGGGTGACAAATTTCTTAAGCGTTATCTCTGATGAGGCGGGTAA‑TTCAAA‑GGGAGTAAGAATGATTGGCTATAT‑AGGGGAAGAGA‑CT‑CTGGCAACGG‑AAACTGCCAGTGCTGTATGAAG‑AGTCC‑GGGG‑CTATGCTTATAGCTATAATCATACTGATgagag < 2:180196/247‑1 (MQ=255) cGCACTGACCATTAAGATCACTGTGGTACTCAATTTCAGCGGACGTTTGCGTAACATGCGGTAGGGCAATGAATGTCTCATCAGCTTCCTTGTGTGACAAATTTCTTAAGCATTATCTCTGATGAGGCGGGTAA‑TTCAAA‑GGGAGTAAGAATGATTGGCTATAT‑AGGGGAAGAGA‑CT‑CTGGCAACGG‑AAACTGCCAGTGCTGTATGAAG‑ATTCC‑GGGG‑CTAGGCTTATAGCGATAATCATACTGATgagag < 2:513859/251‑1 (MQ=255) gACCATTAAGATCACTGTGGTACTCAATTTCATCGGACGTTTGCGTAACATGAGGTAGGGCAATGAATGTCTCATCAGCTTCCTTGTGTGACAAATTTCTTAAGCATTATCTCTGATGAGGCGGGGAA‑ATCAAA‑GGGGGGAAGAATGATTTGGTATAT‑AGGGGGAGAAG‑CC‑CTGGCAAAGG‑GAAATGCCAGAGCTGTAAGCAG‑AATCC‑GGGGGTTATGCT‑ATAGGGAGAATTATACTGGTGGGAGAggg > 1:37290/1‑249 (MQ=255) aCCATTAAGATCACTGTGGTACTCAATTTCATCGGACGTTTGCGTAACATGCGGTAGGGCAATGAATGTCTCATCAGCTTCCTTGTGTGACAAATTTCTTAAGCATTATCTCTGATGAGGCGGGTAA‑TTCAAA‑AGGAGGAAGAATGATTGGCTATAT‑AGGGGGAGAGA‑CT‑CTGGGAACGG‑AAACATCCAGGGCTGGATGAAG‑GTTCC‑GGGG‑GTACGCTTATAGCGGTAATTCTAATGTTGAGAGAgggg > 2:49304/1‑248 (MQ=255) aTTAAGATCACTGTGGTACTCAATTTCATCGGACGTTTGCGTAACATGCGGTAGGGCAATGAATGTCTCATCAGCTTCCTTGTGTGACAAATTTCTTAAGCATTATCTCTGATGAGGCGGGTAA‑TTCAAA‑GGGAGTAAGAATGATTGGCTATAT‑AGGGGAAGAGA‑CT‑CTGGCAACGG‑AAACTGCCAGTGCTGTATGAAG‑ATTCC‑GGGG‑CTATGCTTATAGCGATAATCATACTGATGAGAGAGGGAAGGTc < 1:187012/251‑1 (MQ=255) aTTAAGATCACTGTGGTACTCAATTTCATCGGACGTTTGCGTAACATGCGGTAGGGCAATGAATGTCTCATCAGCTTCCTTGTGTGACAAATTTCTTAAGCATTATCTCTGATGAGGCGGGTAA‑TTCAAA‑GGGAGTAAGAATGATTGGCTATAT‑AGGGGAAGAGA‑CT‑CTGGCAACGG‑AAACTGCCAGTGCTGTATGAAG‑ATTCC‑GGGG‑CTATGCTTATAGCGATAATCATACTGATGAGAGAGGGAAGGTc < 1:578296/251‑1 (MQ=255) tgtgGTACTCAATTTCATCGGACGTTTGCGTAACATGCGGTAGGGCAATGAATGTCTCATCAGCTTCCTTGTGTGACAAATTTCTTAAGCATTATCTCTGATGAGGCGGGGAAGTTCAA‑‑GGGAGTAAGAATGATTTGGTTTAT‑AGGGGGAGGGA‑CC‑CTGGCAACGGGAAATTACCAG‑GCTGTATGGAG‑GTTCC‑AGGG‑CTATGGTTATAGCGATAAATATACTGGTGGGAGAGGGAAGGGGATGGATccggg > 2:438467/1‑247 (MQ=255) ttgggaCTCAATGTCATCGGACGTTTGCGTAACATGCGGTAGTGCAATGAATGTCTCAGCAGCTTCCTTGTGTGACAAATTTCTTAAGCATTATCTCTGATGAGGCGGGTAA‑TTCAAA‑GGGAGGAAGAATGATTGGCTATAT‑AGGGGAAGAGA‑CT‑CTGGCAACGG‑AAACTGCCAGTGCTGTATGAAG‑ATTCC‑GGGG‑CTATGCTTATAGCGATAATCATACTGATGAGAGAGGGAAGGTCATGGATCAGgc < 2:139748/245‑1 (MQ=255) tACTCAATTTCATCGGACGTTTGCGTAACATGCGGTAGGGCAATGAATGTCTCCTCAGCTTCCTTGTGTGACAAATTTCTTAAGCATTATCTCTGATGAGGCGGGTAA‑TTTTAA‑GGGAGTAAGAATGATTGTCTTTAT‑AGGGGGAGGGA‑CTACTG‑CACCGG‑AAAATGCCCGGGCTGTATGGAG‑AGTCC‑GCGG‑CTAAGCTTTTAACGATAATCATTCTTTTTAGAGAGGGGGGGTCATGGGTCTGGCGCtc > 2:78265/1‑249 (MQ=255) aaTTTCATCGGACGTTTGCGTAACATGCGGTAGGGCAATGAATGTCTCATCAGCTTCCTTGTGTGACAAATTTCTTAAGCATTATCTCTTATGAGGCGGGTAA‑TTCAAA‑GTGAGTAAGAATGTTTGGCTATAT‑AGGGGAAGAGT‑CT‑CTGTCAACGG‑AAACTTCCAGTGCTGTATGAAG‑ATTCC‑GGGG‑CTATGCTTAGAGCGATACGCATGCTGATGAGAGAGGGAAGGTCATGGATCAGGCGCTAATGGAc < 2:48825/251‑1 (MQ=255) aTTTCATCGGACGTTTGCGTAACATGCGGTAGGGCAATGAATGTCTCATCAGCTTCCTTGTGTGACAAATTTCTTAAGCATTATCTCTGATGAGGCGGGTAA‑TTTAAA‑GGGGGTAAGAAAGATTTGCTTTTT‑TGGGGGAGAGA‑CT‑CTGGCAACGG‑AAACTGCCCGTGCTGTATTAAG‑ATTTC‑GGGG‑GTTTGCTTTTATCGATAATCATACTTTTGAGAGAGGGAGGGTCATGGTTCAGGCGCTACt > 2:157377/1‑246 (MQ=255) aTTTCATCGGACGTTTGCGTAACATGCGGTAGGGCAATGAATGTCTCATCAGCTTCCTTGTGTGACAAATTTCTTAAGCATTATCTCTGATGAGGCGGGTAA‑TTCAAA‑GGGAGTAAGAATGATTGGCTATAT‑AGGGGAAGAGA‑CT‑CTGGCAACGG‑AAACTGCCAGTGCTGTATGAAG‑ATTCC‑GGGG‑CTATGCTTATAGCGATAATCATACTGATGAGAGAGGGAAGGTCATGGATCAGGCGCTACt < 1:157377/246‑1 (MQ=255) ggACGTTTGCGTAACATGCGGTAGGGCAATGAATGTCTCATCAGCTTCCTTGTGTGACAAATTTCTTAAGCATTATCTCTGATGAGGCGGGGAA‑ATTAAA‑GGGGGGAAGAATGATTGGGTTTAT‑AGGGGGAGAGA‑CT‑CCGGCAACGG‑GAAATGCCCGTGCTGTATTAAG‑ATTTC‑GGGG‑CTATGCTTTTAGAGGTAATCATACTGATGAGAGAGGGAAGGGCATTGGTCAGGGGCTACTGGACGGGGG‑TTAt > 1:287906/1‑251 (MQ=255) gACGTTTGCGTAACATGCGGTAGGGCAATGAATGTCTCATCAGCTTCCTTGTTGGACAAATTTCTTAAGCATTATCGCTGATGAGGCGGGTAA‑TTCAAA‑GGGAGTAAGAATGATTGGCTATAT‑AGGGGAAGAGA‑CT‑CTGGCAACGG‑AAGCTGCCAGTGCTGTATGAAG‑ATTCC‑GGGG‑CTATGCTTATAGCGATAATCATACTGATGAGAGAGGGAAGGTCATGGATCAGGCGCTACTGGACGGGTG‑TTATc < 2:419943/251‑1 (MQ=255) aCGTTTGCGTAACATGCGGTAGGGCAATGAATGTCTCATCAGCTTCCTTGTGTGACAAATTTCTTAAGCATTATCTCTGATGAGGCGGGTAA‑TTTAAA‑AGGGGGAAGAATGATTGGCTTTTT‑AGGGGGAGAGA‑AT‑TTGGCAACGG‑AAACTGCCCGGGCTGGTTGAAG‑ATTTC‑CGGG‑CCATGCTTATAACGGGAATTATTATGATGAGAGAGGGAAGGGCATGGGTAAGGGGCTCCTCGAGGGGGG‑GTATCg > 2:159706/1‑251 (MQ=255) gagTAACAGGCGGTAGGGCAATGAAGGACTCATCAGCTTCCTTTTGTGACAAATTGCTTAAGCATTATCTCTGATGAGGCGGGTAA‑TTCAAA‑GGGAGTAAGAATGATTGTCGATAT‑AGGGGAGGAGA‑CT‑CTGGCAACGG‑AAGCTGCCAGTGCTGTATGAAG‑AGTCT‑GGGG‑CTATGCTTATAGCGATAATCATACTGATGATAGAGGGAAGGTCATGGATCAGGCGCTACTGGACGGGGG‑TTATCGCTGTta < 2:310539/249‑1 (MQ=255) aTGCGGTCGGGCAATGACTGTCTCTACATCTTCCTTGTGTGACAAATTGCTTAAGCATTATCTCAGATGAGGCGGGTAA‑TTTAAA‑GGGATTAAGAATGATTGGTTATAT‑AGGGGAAGAGA‑CT‑CTGGCATCGG‑AAACTGCCAGTGCTGTATGAAG‑AGTCC‑GGGG‑CTATGCTTATAGCGATAATCATACTGATGAGATAGGTAAGGTCATGGATCAGGCGCTACTGGACGGGGG‑TTATCGCTGTTATAcctgc < 2:127488/251‑4 (MQ=255) gaatgTCTCATCAGCTTCCTTGTGTGACAAATTTCTTAAGCATTATCTCTGATGAGGCGGGTAA‑TTCCAC‑GGGAGTAAGAATGATTGGGTATATCAGGGGA‑GAGA‑CT‑CTTGTAACGG‑AAAATGCCCGAGGTGTATGAAGGATTC‑‑GGGG‑CTATGCTTATAGCGATAATAATACTGATGGGAGAGGGAAGGGCATGGATCAGGCGCTACTGGACGGGGG‑GTATCGCTGTTTTACCGGCGAAAAGATCGATGTc > 1:379443/1‑251 (MQ=255) gaatgTCTCATCAGCTTCCTTGTGTGACAAATTTCTTAAGCATTATCTCTGATGAGGCGGGTAA‑TTCAAA‑GGGAGTAAGAATGATTGGCTATAT‑AGGGGAAGAGA‑CT‑CTGGCAACGG‑AAACTGCCAGTGCTGTATGAAG‑ATTCC‑GGGG‑CTATGCTTATAGCGATAATCATACTGATGAGAGAGGGAAGGTCATGGATCAGGCGCTACTGGACGGGGG‑TTATCGCTGTTATACCGGCGAAAAGATCGATGt < 1:196603/250‑1 (MQ=255) catcaGCTTCCTTGTGTGACAAATTTCTTAAGCATTATCTCTGATGAGGCGGGTAA‑TTCAAA‑GGGAGTAAGAATGATTGGCTATAT‑AGGGGAAGAGA‑CT‑CTGGCAACGG‑AAACTGCCAGTGCTGTATGAAG‑ATTCC‑GGGG‑CTATGCTTATAGCGATAATCATACTGATGAGAGAGGGAAGGTCATGGATCAGGCGCTACTGGACGGGGG‑TTATCGCTGTTATACCGGCGAAAAGATCGATGTCTATTTc < 2:524868/249‑1 (MQ=255) tgtgtgACAAATTTCTTAAGCATTATCTCTGATGAGGCGGGTAA‑TTCAAA‑GGGAGTAAGAATGATTGGCTATAT‑AGGGGAAGAGA‑CT‑CTGGCAACGG‑AAACTGCCAGTGCTGTATGAAG‑ATTCC‑GGGG‑CTATGCTTATAGCGATAATCATACTGATGAGAGAGGGAAGGTCATGGATCAGGCGCTACTGGACGGGGG‑TTATCGCTGTTATACCGGCGAAAAGATCGATGTCTATTTCAACACTGCGatat < 1:98293/250‑1 (MQ=255) tgtgACAAATTTCTTAAGCATTATCTCTGATGAGGCGGGGAA‑TTCAAA‑AGGAGGAAGAATGGTTGGCTATCT‑AGGGGGAGGGA‑AT‑CTGGCCACCG‑AAAATGCCAGTGGTGTATGAAG‑ATTCC‑GGGG‑CTATGCTTTTAGCGGTAATCATACTGATGAGAGAGGGAAGGGCATGGGTCAGGCGCTACTGGACGGGGG‑GTATCGCTGTTATAACGGCGCAAAAATCGATGTCTATTTTAAACCTGCGATATGTc > 1:531309/1‑251 (MQ=255) gACAAATTTCTTAAGCATTATCTCTGATGAGGCGGGGAA‑ATTAAA‑GGGAGTAAGAATGGTTTGCTATAT‑AGGGGGAGAGA‑CT‑CTGGCAACGG‑AAAATGCCAGTGCTGTATGAAG‑AATCC‑CGGG‑CTATGCTTATAGCGATAATCATACTGATGGGAGAGGGGAGGGCATGGATCAGGCGCTACTTGACGGGGG‑GTATCGCTGTTATACCGGCGAAAAGATCGGTGTCTATTTCAACACTGCGATATGGCAGc > 1:1828/1‑251 (MQ=255) cAAATTTCTTAAGCATTATCTCTGATGAGGCGGGTAA‑TTTAAA‑GGGAGTAAAAATAATTTGCTATAT‑AGGGGGAGAGA‑CT‑CTGGCAACGG‑AAACTGCCCGTGCTGTCTGAAG‑ATTTC‑GGGG‑CTATGCTTATAGCGATAATCATACTGATGAGAGAGGGAAGGTCATGGATCAGGCGCTACTGGACGGGGGGTTA‑CGCTGTTTTTCCTGCGAAAAGAACGATGTCTATTTCAACCCCTCGATATGTCAGCAt > 1:336225/1‑251 (MQ=255) cAAATTTCTTAAGCATTATCTCTGATGAGGCGGGTAA‑TTCAAA‑GGGAGTAAGAATGATTGGCTATAT‑AGGGGAAGAGT‑CT‑CTGGCAACGG‑AAACTGCCAGTGCTGTATGAAG‑ATTCC‑GGGG‑CTATGCTTATATCGATAATCATACTGATGAGAGAGGGAAGGTCATGGATCAGGCGCTACTGGACGGGGG‑TTATCGCTGTTATACCGGCGAAAAGATCGATGTCTATGTCAACACGGCGATATGTCAGCAt < 1:449450/251‑1 (MQ=255) aaaaTTTCTTAAGCATTATCTCTGATGAGGCGGGTAA‑TTCAAA‑GGGAGTAAGAATGATTGGCTATAT‑AGGGGAAGAGA‑CT‑CTGGCAACGG‑AAACTGCCAGTGCTGTATGAAG‑ATTCC‑GGGG‑CTATGCTTATAGCGATAATCATACTGATGAGAGAGGGAAGGTCATGGATCAGGCGCTACTGGACGGGGG‑TTATCGCTGTTATACCGGCGAAAAGATCGATGTCTATTTCAACACTGCGATATGTCAGCAt < 2:200066/250‑1 (MQ=255) tAAGCATTATCTCTGATGAGGCGGGTAA‑TTCAAA‑GGGAGGAAGAATGATTGGCTATAT‑AGGGGGAGAGA‑CT‑CTGGCAACGG‑AAACTGCCCGTGCTGTATGAAG‑ATTCC‑GGGG‑CTATGCTTATAGCGATAATCATACTGATGAGAGAGGGAAGGTCATGGATCAGGCGCTACTGGACGGGGG‑GTATCGCTGTTATACCGGCGAAAAGATCGATGTCTATTTCAACACTGCGATATGTCAGCATTCTGGCAAt > 1:524901/1‑251 (MQ=255) cATTATCTCTGATGAGGCGGGTAA‑TTCAAA‑GGGAGTAAGAATGATTGGCTATAT‑AGGGGAAGAGA‑CT‑CTGGCAACGG‑AAACTGCCAGTGCTGTATGAAG‑ATTCC‑GGGG‑CTATGCTTATAGCGATAATCATACTGATGAGAGAGGGAAGGTCATGGATCAGGCGCTACTGGACGGGGG‑TTATCGCTGTTATACCGGCGAAAAGATCGATGTCTATTTCAACACTGCGATATGTCAGCATTCTGGCAATTGCg < 2:161579/251‑1 (MQ=255) gatgaGGCGGGTAA‑TTCAAA‑GGGAGTAAGAATGATTGGCTATAT‑AGGGGAAGAGA‑CT‑CTGGCAACGG‑AAACTTCCAGTGCTGTATGAAG‑AGTCC‑GGGG‑CGATGCTTATAGCGATAATCATACTGATGAGAGAGGGAAGGTCATGGATCAGGCGCTACTGGACGGGGG‑TTATCGCTGTTATACCGGCGAAAAGATCGATGTCTATTTCAACACTGCGATATGTCATCATTCTGTCAATTGCGTACGTGGc < 2:493048/249‑1 (MQ=255) ggggTAA‑GTCAAA‑GGGAGTAAGAATGATTGGCTATAT‑AGGGGAAGAGA‑CT‑CTGGCAACGG‑AAACTGCCAGTGCTGTATGAAG‑ATTCC‑GGGG‑CTATGCTTATAGCGATAATCATACTGATGAGAGAGGGAAGGTCATGGATCAGGCGCTACTGGACGGGGG‑TTATCGCTGTTATACCGGCGAAAAGATCGATGTCTATTTCAACACTGCGATATGTCAGCATTCTGGCAATTGCGTACGTGGCAACGGCAAg < 2:311225/250‑1 (MQ=255) ggTAA‑TTCAAA‑GGGAGTAAGAATGATTGGCTATAT‑AGGGGAAGAGA‑CT‑CTGGCAACGG‑AAACTGCCAGTGCTGTATGAAG‑ATTCC‑GGGG‑CTATGCTTATAGCGATAATCATACTGATGAGAGAGGGAAGGTCATGGATCAGGCGCTACTGGACGGGGG‑TTATCGCTGTTATACCGGCGAAAAGATCGATGTCTATTTCAACACTGCGATATGTCAGCATTCTGGCAATTGCGTACGTGGCAACGGCAAGtt < 1:143255/251‑1 (MQ=255) cAAA‑GGGAGTAAGAATGATTGGCTATAT‑AGGGGAAGAGG‑CT‑CTGGCAACGG‑AAGCTGCCAGTGCTGTATGAAG‑ATGCC‑GGGG‑CTATTCTTATAGCGATAATCATACTGATGAGAGAGGGAAGGTCATGGATCAGGCGCTACTGGACGGGGG‑TTATCGCTGTTATACCGGCGAAAAGATCGATGTCTATTTCAACACTGCGATATGTCAGCATTCTGGCAATTGCGTACGTGGCAACGGCAAGTTATTTAAt < 2:504787/251‑1 (MQ=255) cAAA‑GGGAGTAAGAATGATTGGCTATAT‑AGGGGAAGAGA‑CT‑CTGGCAACGG‑AAACTGCCAGTGCTGTATGAAG‑ATTCC‑GGGG‑CTATGCTTATAGCGATAATCATACTGATGAGAGAGGGAAGGTCATGGATCAGGCGCTACTGGACGGGGG‑TTATCGCTGTTATACCGGCGAAAAGATCGATGTCTATTTCAACACTGCGATATGTCAGCATTCTGGCAATTGCGTACGTGGCAACGGCAAGTTATTTAAt > 1:259327/1‑251 (MQ=255) cAAA‑GGGAGTAAGAATGATTGGCTATAG‑AGGGGACGAGA‑CT‑CTGGCAACGG‑AAACTGCCAGTGCTGTATGAAG‑ATTCC‑GGGG‑CTATGCTTATAGCGATAATCATACTGATGAGAGATGGAAGGTCATGGATCAGGCGCTACTGGACGGGGG‑GTATCGCTGTTATGCCGGCGAAAAGATCTATGTCTATTTCAACACTGCGATATGTCAGCATTCTGGCAATTGCGTACGTGGCAACGGCAAGTTATTTaa < 1:539354/250‑1 (MQ=255) tAAGAATGATTGGCTATAT‑AGGGGAAGAGA‑CT‑CTGGCAACGG‑AAACTGCCAGTGCTGTATGAAG‑ATTCC‑GGGG‑CTATGCTTATAGCGATAATCATACTGATGAGAGAGGGAAGGTCATGGATCAGGCGCTACTGGACGGGGG‑TTATCGCTGTTATACCGGCGAAAAGATCGATGTCTATTTCAACACTGCGATATGTCAGCATTCTGGCAATTGCGTACGTGGCAACGGCAAGTTATTTAATCTCAAACg > 1:36976/1‑250 (MQ=255) aaGAATGATTGGCTATAT‑AGGGGAAGAGA‑CT‑CTGGCAACGG‑AAACTGCCAGTGCTGTATGAAG‑ATTCC‑GGGG‑CTATGCTTATAGCGATAATCATACTGATGAGAGAGGGAAGGTCATGGATCAGGCGCTACTGGACGGGGG‑TTATCGCTGTTATACCGGCGAAAAGATCGATGTCTATTTCAACACTGCGATATGTCAGCATTCTGGCAATTGCGTACGTGGCAACGGCAAGTTATTTAATCTCAAACGa < 1:7254/250‑1 (MQ=255) aaTGATTGGCTATAT‑AGGGGAAGAGA‑CT‑CTGGCAACGG‑AAACTGCCAGTGCTGTATGAAG‑ATTCC‑GGGG‑CTATGCTTATAGCGATAATCATACTGATGAGAGAGGGAAGGTCATGGATCAGGCGCTACTGGACGGGGG‑TTATCGCTGTTATACCGGCGAAAAGATCGATGTCTATTTCAACACTGCGATATGTCAGCATTCTGGCAATTGCGTACGTGGCAACGGCAAGTTATTTAATCTCAAACGAAAGc > 1:305627/1‑251 (MQ=255) aggCTAGAT‑AAGGGAAGAGA‑CT‑CTGGCTACGT‑AAACTGCCAGTGCTGTATGAAG‑AATCC‑GGGG‑CGATGCTTATAGCGTTAATCATACTGGGGAGAGAGGGAAGGTCATGGATCAGGCGCTATTGGACGGGGG‑TTATCGCTGTTATACCGGCGAAACGATCGATGTCTATTTCAACACTGCGATATGTCATCATTCTGGCAATTGCTTGCTGGGCAACGGCAAGTTATTTAATCTCAAACGaaatcagtgc < 2:219250/249‑8 (MQ=255) | CGCGTCATATCACTGATTTGCGAGAAGTAAATCAGATGCACCACCAATAGCACCGAGAACAGTACCGCACTGACCATTAAGATCACTGTGGTACTCAATTTCATCGGACGTTTGCGTAACATGCGGTAGGGCAATGAATGTCTCATCAGCTTCCTTGTGTGACAAATTTCTTAAGCATTATCTCTGATGAGGCGGGTAA‑TTCAAA‑GGGAGTAAGAATGATTGGCTATAT‑AGGGGAAGAGA‑CT‑CTGGCAACGG‑AAACTGCCAGTGCTGTATGAAG‑ATTCC‑GGGG‑CTATGCTTATAGCGATAATCATACTGATGAGAGAGGGAAGGTCATGGATCAGGCGCTACTGGACGGGGG‑TTATCGCTGTTATACCGGCGAAAAGATCGATGTCTATTTCAACACTGCGATATGTCAGCATTCTGGCAATTGCGTACGTGGCAACGGCAAGTTATTTAATCTCAAACGAAAGCCGTGG > NC_000913/4351517‑4351986 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |