mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.39.0
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,296,268 | 0 | T | C | 45.2% | 15.5 / 28.0 | 32 | intergenic (+474/+168) | gltP/yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| * | NC_000913 | 1,097,437 | 0 | A | G | 44.8% | ‑0.4 / 31.1 | 30 | intergenic (+608/+128) | ycdU/serX | uncharacterized protein YcdU/tRNA‑Ser |
| * | NC_000913 | 4,171,557 | 0 | C | G | 44.0% | 27.3 / 87.2 | 50 | intergenic (+13/‑80) | rrlB/rrfB | 23S ribosomal RNA/5S ribosomal RNA |
| * | NC_000913 | 2,326,450 | 0 | T | G | 42.1% | 49.2 / 11.9 | 38 | G114G (GGT→GGG) | atoB | acetyl‑CoA acetyltransferase |
| * | NC_000913 | 2,228,278 | 0 | G | C | 31.6% | 65.6 / 11.7 | 38 | intergenic (‑1008/‑704) | yohF/yohP | putative oxidoreductase YohF/putative membrane protein YohP |
| * | NC_000913 | 2,434,882 | 0 | T | G | 31.6% | 98.1 / 13.7 | 58 | Y252S (TAC→TCC) | truA | tRNA pseudouridine(38‑40) synthase |
| * | NC_000913 | 2,185,199 | 0 | T | G | 30.9% | 126.0 / 12.6 | 69 | T35P (ACC→CCC) | thiM | hydroxyethylthiazole kinase |
| * | NC_000913 | 4,622,250 | 0 | A | G | 30.0% | 70.4 / 10.0 | 40 | E161G (GAG→GGG) | yjjJ | toxin YjjJ |
| * | NC_000913 | 1,328,465 | 0 | T | G | 26.9% | 162.8 / 13.8 | 78 | T216T (ACA→ACC) | yciK | putative oxidoreductase |
| * | NC_000913 | 2,185,238 | 0 | A | G | 24.6% | 140.3 / 13.8 | 69 | S22P (TCC→CCC) | thiM | hydroxyethylthiazole kinase |
| * | NC_000913 | 803,869 | 0 | G | T | 23.8% | 80.3 / 17.7 | 42 | V123L (GTG→TTG) | ybhJ | putative hydratase YbhJ |
| * | NC_000913 | 119,396 | 0 | C | T | 23.1% | 122.0 / 13.9 | 65 | S39F (TCT→TTT) | ampE | protein AmpE |
| * | NC_000913 | 3,813,272 | 0 | C | T | 21.3% | 105.9 / 12.4 | 61 | S181L (TCG→TTG) | dfp | fused 4'‑phosphopantothenoylcysteine decarboxylase and phosphopantothenoylcysteine synthetase |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 781583 | 54 (0.830) | 3 (0.050) | 3/464 | 5.0 | 5.8% | noncoding (7/76 nt) | lysQ | tRNA‑Lys |
| ? | NC_000913 | = 781641 | 45 (0.710) | noncoding (65/76 nt) | lysQ | tRNA‑Lys | |||||
| * | ? | NC_000913 | = 781218 | 51 (0.780) | 3 (0.050) | 3/464 | 5.0 | 5.6% | noncoding (72/76 nt) | lysY | tRNA‑Lys |
| ? | NC_000913 | = 781576 | 52 (0.820) | intergenic (+132/‑1) | lysZ/lysQ | tRNA‑Lys/tRNA‑Lys | |||||