mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.39.0
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,825,056 | 0 | G | A | 45.5% | 13.3 / 12.3 | 22 | intergenic (‑119/+84) | ves/spy | HutD family protein Ves/ATP‑independent periplasmic chaperone |
| * | NC_000913 | 4,296,268 | 0 | T | C | 37.5% | 14.0 / 21.9 | 24 | intergenic (+474/+168) | gltP/yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| * | NC_000913 | 4,256,069 | 0 | G | C | 33.3% | 68.4 / 12.2 | 42 | P133R (CCG→CGG) | plsB | glycerol‑3‑phosphate 1‑O‑acyltransferase |
| * | NC_000913 | 803,869 | 0 | G | T | 32.5% | 60.3 / 12.9 | 40 | V123L (GTG→TTG) | ybhJ | putative hydratase YbhJ |
| * | NC_000913 | 4,161,142 | 0 | C | A | 31.8% | 71.0 / 13.0 | 44 | Q26K (CAA→AAA) | fabR | DNA‑binding transcriptional repressor FabR |
| * | NC_000913 | 4,336,901 | 0 | T | A | 30.3% | 38.0 / 11.9 | 34 | Y44F (TAT→TTT) | adiC | arginine:agmatine antiporter |
| * | NC_000913 | 2,370,266 | 0 | T | G | 27.5% | 127.3 / 14.2 | 69 | G83G (GGT→GGG) | arnD | putative 4‑deoxy‑4‑formamido‑L‑arabinose‑phosphoundecaprenol deformylase ArnD |
| * | NC_000913 | 4,161,148 | 0 | G | A | 27.3% | 76.6 / 15.2 | 44 | E28K (GAA→AAA) | fabR | DNA‑binding transcriptional repressor FabR |
| * | NC_000913 | 2,185,199 | 0 | T | G | 26.9% | 181.2 / 13.6 | 95 | T35P (ACC→CCC) | thiM | hydroxyethylthiazole kinase |
| * | NC_000913 | 1,036,927 | 0 | T | A | 25.9% | 107.6 / 11.8 | 55 | L60Q (CTA→CAA) | hyaF | protein HyaF |
| * | NC_000913 | 1,604,237 | 0 | C | T | 23.7% | 123.7 / 11.2 | 59 | S64L (TCG→TTG) | lsrD | Autoinducer‑2 ABC transporter membrane subunit LsrD |
| * | NC_000913 | 728,024 | 0 | T | A | 22.4% | 136.8 / 12.7 | 67 | N237Y (AAT→TAT) | kdpA | K(+) transporting P‑type ATPase subunit KdpA |
| * | NC_000913 | 941,713 | 0 | T | G | 21.7% | 110.4 / 13.6 | 46 | V252G (GTG→GGG) | dmsA | dimethyl sulfoxide reductase subunit A |
| * | NC_000913 | 2,185,238 | 0 | A | G | 21.4% | 248.6 / 11.0 | 103 | S22P (TCC→CCC) | thiM | hydroxyethylthiazole kinase |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 15911 | NA (NA) | 6 (0.100) +TTTTTTCAA |
6/476 | 3.2 | NA | noncoding (525/1345 nt) | IS186 | repeat region |
| ? | NC_000913 | 15922 = | NA (NA) | noncoding (536/1345 nt) | IS186 | repeat region | |||||