mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.39.0
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,396,772 | 0 | T | C | 76.9% | 66.3 / 14.7 | 40 | F236F (TTT→TTC) | amiB | N‑acetylmuramoyl‑L‑alanine amidase B |
| * | NC_000913 | 4,392,997 | 0 | G | A | 65.7% | 35.6 / 26.8 | 35 | V357V (GTC→GTT) | queG | epoxyqueuosine reductase |
| * | NC_000913 | 4,393,552 | 0 | G | A | 64.3% | 23.4 / 24.8 | 28 | F172F (TTC→TTT) | queG | epoxyqueuosine reductase |
| * | NC_000913 | 734,682 | 0 | A | G | 52.0% | 2.4 / 24.5 | 29 | intergenic (+580/‑968) | ybfB/ybfC | uncharacterized protein YbfB/uncharacterized protein YbfC |
| * | NC_000913 | 266,358 | 0 | T | G | 40.9% | 14.0 / 10.8 | 23 | T66P (ACC→CCC) | yafY | inner membrane lipoprotein YafY |
| * | NC_000913 | 734,636 | 0 | C | T | 38.5% | 11.4 / 18.9 | 27 | intergenic (+534/‑1014) | ybfB/ybfC | uncharacterized protein YbfB/uncharacterized protein YbfC |
| * | NC_000913 | 2,972,606 | 0 | T | C | 36.7% | 20.6 / 26.1 | 31 | V337A (GTG→GCG) | tas | putative NADP(H)‑dependent aldo‑keto reductase Tas |
| * | NC_000913 | 1,111,968 | 0 | C | T | 30.3% | 34.0 / 22.6 | 33 | A369V (GCC→GTC) | opgH | osmoregulated periplasmic glucans biosynthesis protein H |
| * | NC_000913 | 732,765 | 0 | C | T | 28.2% | 46.2 / 20.8 | 39 | T1061T (ACC→ACT) | rhsC | rhs element protein RhsC |
| * | NC_000913 | 4,405,552 | 0 | A | G | 27.6% | 41.7 / 14.8 | 29 | E289G (GAG→GGG) | purA | adenylosuccinate synthetase |
| * | NC_000913 | 2,980,792 | 0 | C | G | 25.8% | 57.4 / 21.1 | 31 | G464A (GGC→GCC) | araE | arabinose:H(+) symporter |
| * | NC_000913 | 4,421,835 | 0 | A | G | 25.0% | 75.3 / 15.7 | 40 | Y43C (TAC→TGC) | ulaC | L‑ascorbate specific PTS enzyme IIA component |
| * | NC_000913 | 4,424,864 | 0 | T | C | 25.0% | 56.6 / 20.8 | 36 | intergenic (‑73/‑254) | yjfY/rpsF | DUF1471 domain‑containing protein YjfY/30S ribosomal subunit protein S6 |
| * | NC_000913 | 3,717,771 | 0 | A | G | 24.0% | 30.3 / 11.2 | 25 | G154G (GGA→GGG) | ghrB | glyoxylate reductase |
| * | NC_000913 | 366,526 | 0 | T | G | 23.6% | 1427.7 / 87.4 | 651 | T329P (ACC→CCC) | lacI | DNA‑binding transcriptional repressor LacI |
| * | NC_000913 | 3,474,822 | 0 | A | G | 21.9% | 75.3 / 17.9 | 41 | R48R (CGT→CGC) | tusB | sulfurtransferase complex subunit TusB |
| * | NC_000913 | 3,358,120 | 0 | G | A | 21.1% | 75.4 / 15.5 | 38 | L1132L (CTG→CTA) | gltB | glutamate synthase subunit GltB |
| * | NC_000913 | 829,725 | 1 | . | G | 20.0% | 67.5 / 20.8 | 30 | coding (248/999 nt) | ybhG | HlyD_D23 family protein YbhG |
| * | NC_000913 | 4,606,094 | 1 | . | G | 20.0% | 42.1 / 15.1 | 20 | noncoding (72/87 nt) | leuV | tRNA‑Leu |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4456969 | 33 (1.270) | 5 (0.200) | 5/478 | 2.3 | 13.3% | coding (1185/1374 nt) | mpl | UDP‑N‑acetylmuramate‑‑L‑alanyl‑gamma‑D‑glutamyl‑ meso‑2,6‑diaminoheptanedioate ligase |
| ? | NC_000913 | 4456977 = | 33 (1.310) | coding (1193/1374 nt) | mpl | UDP‑N‑acetylmuramate‑‑L‑alanyl‑gamma‑D‑glutamyl‑ meso‑2,6‑diaminoheptanedioate ligase | |||||