mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.39.0
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 38 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 367,573 | 0 | G | A | 69.6% | 343.5 / 191.2 | 254 | intergenic (‑63/+14) | lacI/mhpR | DNA‑binding transcriptional repressor LacI/DNA‑binding transcriptional activator MhpR |
| * | NC_000913 | 3,862,668 | 0 | A | G | 46.9% | 20.7 / 13.3 | 32 | I312I (ATT→ATC) | glvC | putative PTS enzyme II component GlvC |
| * | NC_000913 | 4,037,496 | 0 | A | T | 46.1% | 34.5 / 121.4 | 77 | intergenic (+161/‑23) | alaT/rrlA | tRNA‑Ala/23S ribosomal RNA |
| * | NC_000913 | 288,382 | 0 | A | C | 37.6% | 115.9 / 34.0 | 111 | T532P (ACC→CCC) | yagH | putative xylosidase/arabinosidase |
| * | NC_000913 | 4,213,765 | 0 | A | C | 37.2% | 56.7 / 11.0 | 43 | V120G (GTG→GGG) | yjaB | peptidyl‑lysine N‑acetyltransferase YjaB |
| * | NC_000913 | 811,721 | 0 | T | G | 36.7% | 90.0 / 10.9 | 82 | V67G (GTG→GGG) | bioC | malonyl‑acyl carrier protein methyltransferase |
| * | NC_000913 | 2,185,199 | 0 | T | G | 32.1% | 125.7 / 18.3 | 82 | T35P (ACC→CCC) | thiM | hydroxyethylthiazole kinase |
| * | NC_000913 | 2,392,753 | 0 | G | A | 31.8% | 65.6 / 59.0 | 66 | L97F (CTC→TTC) | nuoM | NADH:quinone oxidoreductase subunit M |
| * | NC_000913 | 1,455,940 | 0 | A | C | 31.5% | 69.3 / 10.9 | 57 | T6P (ACC→CCC) | paaD | phenylacetate degradation protein |
| * | NC_000913 | 3,531,440 | 0 | A | C | 30.1% | 189.4 / 13.9 | 103 | Y334D (TAT→GAT) | yhgE | putative transport protein YhgE |
| * | NC_000913 | 312,169 | 0 | T | G | 29.9% | 127.1 / 12.4 | 77 | L20V (TTG→GTG) | ykgL | uncharacterized protein YkgL |
| * | NC_000913 | 4,256,069 | 0 | G | C | 29.3% | 79.2 / 11.6 | 42 | P133R (CCG→CGG) | plsB | glycerol‑3‑phosphate 1‑O‑acyltransferase |
| * | NC_000913 | 4,065,598 | 0 | G | A | 28.6% | 68.1 / 10.2 | 42 | L57L (CTG→TTG) | yihO | putative sulfoquinovose transporter |
| * | NC_000913 | 581,381 | 0 | A | G | 26.8% | 128.7 / 61.8 | 98 | intergenic (+2/‑153) | nohD/tfaD | putative DNA‑packaging protein NohD/putative tail fiber assembly protein TfaD |
| * | NC_000913 | 288,377 | 0 | A | C | 25.0% | 159.9 / 12.6 | 105 | Y530S (TAC→TCC) | yagH | putative xylosidase/arabinosidase |
| * | NC_000913 | 3,350,658 | 0 | G | T | 25.0% | 100.5 / 28.1 | 56 | noncoding (82/121 nt) | arcZ | small regulatory RNA ArcZ |
| * | NC_000913 | 4,296,268 | 0 | T | C | 25.0% | 60.1 / 25.5 | 44 | intergenic (+474/+168) | gltP/yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| * | NC_000913 | 354,288 | 0 | T | G | 24.3% | 298.9 / 18.9 | 141 | V528G (GTG→GGG) | prpE | propionyl‑CoA synthetase |
| * | NC_000913 | 119,396 | 0 | C | T | 24.1% | 105.7 / 15.1 | 59 | S39F (TCT→TTT) | ampE | protein AmpE |
| * | NC_000913 | 581,380 | 0 | C | G | 24.0% | 180.0 / 81.8 | 100 | intergenic (+1/‑154) | nohD/tfaD | putative DNA‑packaging protein NohD/putative tail fiber assembly protein TfaD |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3350563 | 54 (0.720) | 4 (0.050) | 4/486 | 5.1 | 6.9% | intergenic (‑104/‑14) | elbB/arcZ | low activity glyoxalase ElbB/small regulatory RNA ArcZ |
| ? | NC_000913 | = 3584195 | NA (NA) | noncoding (768/768 nt) | IS1 | repeat region | |||||
| * | ? | NC_000913 | = 4271640 | 109 (1.450) | 3 (0.040) | 3/482 | 5.5 | 2.7% | coding (2232/2823 nt) | uvrA | UvrABC excision nuclease subunit A |
| ? | NC_000913 | 4272288 = | 106 (1.420) | coding (1584/2823 nt) | uvrA | UvrABC excision nuclease subunit A | |||||
| * | ? | NC_000913 | 3560843 = | 63 (0.840) | 3 (0.040) | 3/474 | 5.5 | 4.2% | coding (610/831 nt) | glpG | rhomboid protease GlpG |
| ? | NC_000913 | 3561034 = | 76 (1.030) | coding (419/831 nt) | glpG | rhomboid protease GlpG | |||||
| * | ? | NC_000913 | = 3349820 | 85 (1.130) | 3 (0.040) +A |
3/484 | 5.5 | 3.3% | coding (640/654 nt) | elbB | low activity glyoxalase ElbB |
| ? | NC_000913 | = 4228171 | 90 (1.190) | coding (441/1632 nt) | yjbB | putative inorganic phosphate export protein YjbB | |||||
| * | ? | NC_000913 | = 2754655 | 41 (0.540) | 3 (0.040) | 3/476 | 5.5 | 4.0% | coding (110/477 nt) | ratA | ribosome association toxin RatA |
| ? | NC_000913 | = 3440772 | 105 (1.420) | coding (258/990 nt) | rpoA | RNA polymerase subunit alpha | |||||
| * | ? | NC_000913 | = 1050545 | NA (NA) | 3 (0.040) | 3/486 | 5.5 | 5.3% | noncoding (768/768 nt) | IS1 | repeat region |
| ? | NC_000913 | = 3350563 | 54 (0.720) | intergenic (‑104/‑14) | elbB/arcZ | low activity glyoxalase ElbB/small regulatory RNA ArcZ | |||||