| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 119,396 | 0 | C | T | 24.1% | 105.7 / 15.1 | 59 | S39F (TCT→TTT) | ampE | protein AmpE |
| Reads supporting (aligned to +/- strand): ref base C (7/37); new base T (14/0); total (22/37) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.15e-08 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
GATTGATTGCTATCCGGATATCGCTAAAAACATGACGGGCCATTGTGATATTGCGCCGGATCGGAAAACCGATCCCGGTCCTGCATTTGATTGGGCACGGTTTCGTGTGCTGGTCAGCAAGGAGACAACATGACGCTATTTACAACCTTACTGGTGTTAATTTTCGAGCGCCTGTTTAAGTTGGGCGAGCACTGGCAGCTTGATCATCGTCTTGAAGCGTTCTTTCGGCGGGTG‑AAACATTTTTCTCTCGGGCGCACG‑TTAGGCATGACCATTATTGC‑GATGGGCGTGACTTTTTTACTGTTACGCGCATTGCAGGGAGTATT‑GTTCAACGTTCCCACGCTACTGGTGTGGCTGCTGATTGGTTTGCTGTGTATTGGCGCAGGTAAAGTTCGTCTTCATTATCATGCTTATCTGACAGCTGCTTCACGTAATGATAGCCATGCCCGTGCCACGATGGCTGGCGAACTCACCATGATTCACGGCGTCCCGGCA > NC_000913/119152‑119643 | gattgattGCTATCCGGATATCGCTAAAAACATGACGGGCCATTGTGATATTGCGCCGGATCGGAAAACCGATCCCGGTCCTGCATTTGATTGGGCACGGTTTCGTGTGCTGGTCAGCAAGGAGACAACATGACGCTATTTACAACCTTACTGGTGTTAATTTTCGAGCGCCTGTTTAAGTTGGGCGAGCACTGGCAGCTTGATCAGCGTCTTGAAGCGTTCTTTCGGCGGGTG‑AAACATTTTtctctc < 1:606739/249‑1 (MQ=255) cTATCCGGATATCGCTAAAAACATGACGGGCCATTGTGATATTGCGCCGGATCGGAAAACCGATCCCGGTCCTGCATTTGATTGGGCACGGTTTCGTGTGCTGGTCAGCAAGGAGACAACATGACGCTATTTACAACCTTACTGGTGTTAATTTTCGAGCGCCTGTTTAAGTTGGGCGAGCACTGGCAGCTTGATCATCGTCTTGAAGCGTTCTTTCGGCGGGGG‑AAACCTTTTTTTTTCgggggcccggt > 1:588195/1‑243 (MQ=255) aTCCGGATATCGCTAAAAACATGACGGGCCATTGTGATATTGCGCCGGATCGGAAAACCGATCCCGGTCCTGCATTTGATTGGGCACGGTTTCGTGTGCTGGTCAGCAAGGAGACAACATGACGCTATTTACAACCTTACTGGTGTTAATTTTCGAGCGCCTGTTTAAGTTGGGCGAGCACTGGCAGCTTGATCATCGTCTTGAAGCGTTCTTTCGGCGGGTG‑GAAAATTTTTTTCTCGGGCGCACG‑tt > 1:37099/1‑249 (MQ=255) tCCGGATATCGCTAAAAACATGACGGGCCATTGTGATATTGCGCCGGATCGGAAAACCGATCCCGGTCCTGCATTTGATTGGGCACGGTTTCGTGTGCTGGTCAGCAAGGAGACAACATGACGCTATTTACAACCTTACTGGTGTTAATTTTCGAGCGCCTGTTTAAGTTGGGCGAGCACTGGCAGCTTGATCATCGTCTTGAAGCGTTCTTTCGGCGGGGG‑AAAAATTTTTTTCTCGGGCGGACG‑TTAgg > 1:785953/1‑251 (MQ=255) ccGGATATCGCATAAAAGATGACGGGCCATTGTGATATTGCGCCGGATCGGAAAACCGATCCCGGTCCTGCATTTGATTGGGCACGGTTTCGTGTGCTGGTCAGCAAGGAGACAACATGACGCGATTTACAACCTTACTGGTGTTAATTTTCGAGCGCCTGTTTAAGTTGGGCGAGCACTGGCAGCGTGATCATCGTCTTGAAGCGTTCTTTCGGCGGGTG‑AAACATTTTTCTCTCGGGCGCACG‑TTAGGc < 2:6752/251‑1 (MQ=255) ggATATCGCTAAAAACATGACGGGCCATTGTGATATTGCGCCGGATCGGAAAACCGATCCCGGTCCTGCATTTGATTGGGCACGGTTTCGTGTGCTGGTCAGCAAGGAGACAACATGACGCTATTTACAACCTTACTGGTGTTAATTTTCGAGCGCCTGTTTAAGTTGGGCGAGCACTGGCAGCTTGATCATCGTCTTGAAGCGTTCTTTCGGCGGGTG‑AAACATTTTTCTCTCGGGCGCACG‑TTAGGCAt < 1:305840/251‑1 (MQ=255) accGCTAAAAACATGACAGGCCATTGTTATATTGCGCCGGATCGGAAAACCGATCCCGGTCCTGCATTTGATTGGGCACGGTTTCGTGTGCTGGTCAGCAAGGAGACAACATGACGCTATTTACAACCTTACTGGTGTTAATTTTCGAGCGCCTGTTTAAGTTGGGCGAGCACTGGCAGCTTGATCATCGTCTTGAAGCGTTCTTTCGGCGGGTG‑AAACATTTTTCTCTCGGGCGCACG‑TTAGGCATGAc < 2:786410/248‑1 (MQ=255) aaaCATGACGGGCCATTGTGATATTGCGCCGGATCGGAAAACCGATCCCGGTCCTGCATTTGATTGGGCACGGTTTCGTGTGCTGGTCAGCAAGGAGACAACATGACGCTATTTACAACCTTACTGGTGTTAATTTTCGAGCGCCTGTTTAAGTTGGGCGAGCACTGGCAGCTTGATCATCGTCTTGAAGCGTTCTTTCGGCGGGTG‑GAACATTTTTCTCTCGGGCGCACG‑GTAGGccataccactcttgc > 1:35127/1‑237 (MQ=255) aCGGGCCATTGTGATATTGCGCCGGATCGGAAAACCGATCCCGGTCCTGCATTTGATTGGGCACGGTTTCGTGTGCTGGTCAGCAAGGAGACAACATGACGCTATTTACAACCTTACTGGTGTTAATTTTCGAGCGCCTGTTTAAGTTGGGCGAGCACTGGCAGCTTGATCATCGTCTTGAAGCGTTCTTTCGGCGGGGG‑AAACATTTTTTTCTCGGGCGCAAG‑TTAGGCATGGACattatttgaatgggg > 1:549106/1‑242 (MQ=255) ccATTGTGATATTGCGCCGGATCGGAAAACCGATCCCGGTCCTGCATTTGATTGGGCACGGTTTCGTGTGCTGGTCAGCAAGGAGACAACATGACGCTATTTACAACCTTACTGGTGTTAATTTTCGAGCGCCTGTTTAAGTTGGGCGAGCACTGGCAGCTTGATCATCGTCTTGAAGCGTTCTTTCGGCGGGTG‑AAACATTTTTCTCTCGGGCGCACG‑TTAGGCATGACCATTATTGC‑GATGGGCGTGAc < 1:715219/251‑1 (MQ=255) ggcgtcGGATCGGAAAACCGATCCCGGTCCTGCATTTGATTGGGCACGGTTTCGTGTGCTGGTCAGCAAGGAGACAACATGACGCTATTTACAACCTTACTGGTGTTAATTGTCGAGCGCCTGTTTAAGTTGGGCGAGCACTGGCAGCTTGATCATCGTCTTGAAGCGTTCTTTCGGCGGGTG‑AAACATTTTTCTCTCGGGCGCACG‑TTAGGCATGACCAGTATTGC‑GATGGGCGTGACTTTTTTACTGtt < 2:117335/246‑1 (MQ=255) ggATCGGAAAACCGATCCCGGTCCTGCATTTGATTGGGCACGGTTTCGTGTGCTGGTCAGCAAGGAGACAACATGACGCTATTTACAACCTTACTGGTGTTAATTTTCGAGCGCCTGTTTAAGTTGGGCGAGCACTGGCAGCTTGATCATCGTCTTGCAGCGTTCTTTCGGCGGGGGCAAAC‑TTTTTTTCTCGGGGGCCCGGTTTGCCA‑GACCATTAATCC‑CATGGGCGGGACTTTTTTACtttttaccgc > 1:137475/1‑242 (MQ=255) gATCGGAAAACCGATCCCGGTCCTGCATTTGATTGGGCACGGTTTCGTGTGCTGGTCAGCAAGGAGACAACATGACGCTATTTACAACCTTACTGGTGTTAATTTTCGAGCGCCTGTTTAAGTTGGGCGAGCACTGGCAGCTTGATCATCGTCTTGAAGCGTTCTTTCGGCGGGTG‑AAACATTTTTCTCTCGGGCGCACG‑tt < 1:598588/202‑1 (MQ=255) cGGAAAACCGATCCCGGTCCTGCATTTGATTGGGCACGGTTTCGTGTGCTGGTCAGCAAGGAGACAACATGACGCTATTTACAACCTTACTGGTGTTAATTTTCGAGCGCCTGTTTAAGTTGGGCGAGCACTGGCAGCTTGATCATCGTCTTGAAGCGTTCTTTCGGCGGGTG‑AAACATTTTTCTCTCGGGCGCACG‑TTAGGCATGACCATTATTGC‑GATGGGCGTGACTTTTTTACTGTTACGCGCATTg < 1:693123/251‑1 (MQ=255) cGATCCCGGTCCTGCATTTGATTGGGCACGGTTTCGTGTGCTGGTCAGCAAGGCGACAACATGACGCTATTTACAACCTTACTGGTGTTAATTTTCGAGCGCCTGTTTAAGTTGGGCGAGCACTGGCAGCTTGATCATCGTCTTGAAGCGTTCTTTCGGCGGGTG‑AAACATTTTTTTCTCGGGCGCACG‑GTAGGCATGACCCTTATTTA‑GATGGGGGGGACTTTTTTTCTGTTAAgcgcctttaagggagg > 1:460992/1‑239 (MQ=255) cccGGTCCTGCATTTGATTGGGCACGGTTTCGTGTGCTGGTCAGCAAGGAGACAACATGACGCTATTTACAACCTTACTGGTGTTAATTTTCGAGCGCCTGTTTAAGTTGGGCGAGCACTGGCAGCTTGATCATCGTCTTGAAGCGTTCTTTCGGCGGGTG‑AAACATTTTTCTCTCGGGCGCACG‑TTAGGCATGACCATTATTGC‑GATGGGCGTGACTTTTTTACTGTTACGCGCATTGCAGGGAGTATT‑g < 1:470119/251‑1 (MQ=255) tGCATTTGATTGGGCACGGTTTCGTGTGCTGGTCAGCAAGGAGACCACATGACGCTATTTACAACCTTACTGGTGTTAATTTTCGAGCGCCTGTTTAAGTTGGGCGAGCACTGGCAGCTTGATCATCGTCTTGAAGCGTTCTTTCGGCGGGGG‑GAACATTTTTTTCTCGGGCGCCCG‑TTCGGCATTGCCATTATTTCAGTTGGG‑GGGACTTTTTTTCTGTTTCCCGCCTTGCCGGGAGGATT‑GTTTAACGt > 2:734024/1‑251 (MQ=255) aTTTGATTGGGCACGGTTTCGTTTGCTGGTCAGCAAGGAGACAACATGACGCTATTTACAACCTTACTGGTGTTAATTTTCGAGCGCCTGTTTAAGTTGGGCGAGCACTGGCAGCTTGATCATCGTCTTGAAGCGTTCTTTCGGCGGGTG‑AAACATTTTTCTCTCGGGCGCACG‑TTAGGCATGACCATTATTGC‑GATGGGCGTGACTTTTTTACTGTTACGCGCATTGCAGGGAGTATT‑GTTCAACGTTcc < 1:507280/251‑1 (MQ=255) cGTGTGTTTGTCAGCAAGGAGACAACATGACGCTATTTACAACCTTACTGGTGTTAATTTTCGAGCGCCTGTTTAAGTTGGGCGAGCACTGGCAGCTTGATCATCGTCTTGAAGCGTTCTTTCGGCGGGTG‑AAACATTTTTCTCTCGGGCGCACG‑TGAGGCATGACCATTATTGC‑GATGGGCGTGACTTTTTTACTGTTACGCGCATTGCAGGGAGTATT‑GTTCAACGTTCCCACGCTACTGGTGTGgct < 1:619958/250‑1 (MQ=255) gtgtGCTGGTCAGCAAGGAGACAACATGACGCTATTTACAACCTTACTGGTGTTAATTTTCGAGCGCCTGTTTAAGTTGGGCGAGCACTGGCAGCTTGATCATCGTCTTGAAGCGTTCTTTCGGCGGGGG‑AAACATTTTTTTCTCGGGCGCCCG‑TTAGGCATGACCATTATTTC‑GATGGGCGGGACTTTTTTACTTTTACGCGCATTGCAGGGGGTATT‑GTTCAAAGTTTCCACGCTACTGGTGTGggtgc > 1:484782/1‑251 (MQ=255) gtgtGCTGGTCAGCAAGGAGACAACATGACGCTATTTACAACCTTACTGGTGTTAATTTTCGAGCGCCTGTTTAAGTTGGGCGAGCACTGGCAGCTTGATCATCGTCTTGAAGCGTTCTTTCGGCGGGGG‑AAAAATTTTTTTCTCGGGCGCACG‑TTAGGCATGGCCCTTTTTGC‑GGTGGGGGGGGCTTTTTTTCTTTTACGCGCACTTCAGGGAGGATTTGTTCA‑CGTTCCCCCGCTACTTGTGGGgctgg > 2:250944/1‑250 (MQ=255) gtgCTGGTCAGCAAGGAGACAACATGACGCTATTTACAACCTTACTGGTGTTAATTTTCGAGCGCCTGTTTAAGTTGGGCGAGCACTGGCAGCTTGATCATCGTCTTGAAGCGTTCTTTCGGCGGGTG‑AAACATTTTTCTCTCGGGCGCACG‑TTAGGCATGACCATTATTGC‑GATGGGCGTGACTTTTTTACTGTTACGCGCATTGCAGGGAGTATT‑GTTCAACGTTCCCACGCTACTGGTGTGGctgctg < 1:192412/251‑1 (MQ=255) gCTGGTCAGCAAGGAGACAACATGACGCTATTTACAACCTTACTGGTGTTAATTTTCGAGCGCCTGTTTAAGTTGGGCGAGCACTGGCAGCTTGATCATCGTCTTGAAGCGTTCTTTCGGCGGGTG‑AAACATTTTTCTCTCGGGCGCACG‑TTAGGCATGACCATTATTGC‑GATGGGCGTGACTTTTTTACTGTTACGCGCATTGCAGGGAGTATT‑GTTCAACGTTCCCACGCTACTGGTGTGGCTGCTGa < 1:60620/250‑1 (MQ=255) gCTGGTCAGCAAGGAGACAACATGACGCTATTTACAACCTTACTGGTGTTAATTTTCGAGCGCCTGTTTAAGTTGGGCGAGCACTGGCAGCTTGATCATCGTCTTGAAGCGTTCTTTCGGCGGGTG‑AAACATTTTTCTCTCGGGCGCACG‑TTAGGCATGACCATTATTGC‑GATGGGCGTGACTTTTTTACTGTTACGCGCATTGCAGGGAGTATT‑GTTCAACGTTCCCACGCTACTGGTGTGGCTGCTGAt < 1:641233/251‑1 (MQ=255) cTGGTCAGCAAGGAGACAACATGACGCTATTTACAACCTTACTGGTGTTAATTTTCGAGCGCCTGTTTAAGTTGGGCGAGCACTGGCAGCTTGATCATCGTCTTGAAGCGTTCTTTCGGCGGGGG‑AAACATTTTTCTCTCGGGCGCACG‑TTAGGCATGACCACTATTGC‑GATGGGCGTGGCTTTTTTTCTGTTACGCGCATTGCAGGGGGGATT‑GTTCAACGTTCCCACGCTACTGGTGTGGctgctgttt > 1:241883/1‑248 (MQ=255) cAGCAAGGAGACAACATGACGCTATTTACAACCTTACTGGTGTTAATTTTCGAGCGCCTGTTTAAGTTGGGCGAGCACTGGCAGCTTGATCATCGTCTTGAAGCGTTCTTTCGGCGGGTG‑AAACATTTTTCTCTCGGGCGCACG‑TTAGGCATGACCATTATTGC‑GATGGGCGTGACTTTTTTACTGTTACGCGCATTGCAGGGAGTATT‑GTTCAACGTTCCCACGCTACTGGTGTGGCTGCTGATTGGtt < 1:784657/250‑1 (MQ=255) aaGGAGACAACATGACGCTATTTACAACCTTACTGGTGTTAATTTTCGAGCGCCTGTTTAAGTTGGGCGAGCACTGGCAGCTTGATCATCGTCTTGAAGCGTTCTTTCGGCGGGTG‑AAACATTTTTCTCTCGGGCGCACG‑TTAGGCATGACCATTATTGC‑GATGGGCGTGACTTTTTTACTGTTACGCGCATTGCAGGGAGTATT‑Gt < 1:587236/207‑1 (MQ=255) ggAGACAACATGACGCTATTTACACCCTTACTGGTGTTAATTTTCGAGCGCCTGTTTAAGTTGGGCGAGCACTGGCAGCTTGATCATCGTCTTGAAGCGTTCTTTCGGCGGGTG‑AAACATTTTTCTCTCGGGCGCACG‑TTAGGCATGACCATTATTGC‑GATGGGCGTGACTTTTTTACTGTTACGCGCATTGCAGGGAGTATT‑GTTCAACGTTCCCACGCTACTGGTGTGGCTGCTGATTGGTTTGCtgtg < 1:426350/251‑1 (MQ=255) caacaTGACGCTATTTACAACCTTACTGGTGTTAATTTTCGAGCGCCTGTTTAAGTTGGGCGAGCACTGGCAGCTTGATCATCGTCTTGAAGCGTTCTTTCGGCGGGTG‑AAACATTTTTCTCTCGGGCGCACG‑TTAGGCATGACCATTATTGC‑GATGGGCGTGACTTTTTTACTGTTACGCGCATTGCAGGGAGTATT‑GTTCAACGTTCCCACGCTACTGGTGTGGCTGCTGATTGGTTTGCTGTGTATTg < 1:629003/251‑1 (MQ=255) caacaTGACGCTATTTACAACCTTACTGGTGTTAATTTTCGAGCGCCTGTTTAAGTTGGGCGAGCACTGGCAGCTTGATCATCGTCTTGAAGCGTTCTTTCGGCGGGGG‑AAAAATTTTTTTCTCGGGCGCACG‑TTTGGCATGGCCATTATTTC‑GATGGGCGTGACTTTTTTACTGTTACGCGCATTGCAGGGAGGATT‑GTTTAAAGTTCCCACGCTACTGGTGTGGCTGCTGTTTTGTTTGCTgtgtgttt > 1:172547/1‑247 (MQ=255) acaTGACGCTAGTGACAACCTTACTGGTGTTAATTTTCGAGCGCCTGTTTAAGTTGGGCGAGCACTGGCAGCTTGATCATCGTCTTGAAGCGTTCTTTCGGCGGGTG‑AAACATTTTTCTCTCGGGCGCACG‑TTAGGCATGACCATTATTGC‑GATGGGCGTGACTTTTTTACTGTTACGCGCATTGCAGGGAGTATT‑GTTCAACGTTCCCACGCTACTGGTGTGGCTGCTGATTGGTTTGCTGTGTATTGgc < 1:798497/251‑1 (MQ=255) actcTATTTAGAACCTGACTGGTGTTAATTGTCGAGCTCCTGTTTAAGTTGGGCGAGCACTGGCAGCTTGATCATCGTCTTGAAGCGTTCTGTCGGCGGGTG‑AAACATTTTTCTCTCGGGCGCACG‑TTAGGCATGACCAATATTGC‑GATGGGCGTTACTTGTTCACTGTTACGCGCATTACAGGGAGTGTT‑GTTCAACGTTGCCACGCTACGGGTGTGGCTGCTGATTGTTTTGCTGTGTATTGGCGCAgg < 2:95283/248‑1 (MQ=255) aCGCTATTTACAACCTTACTGGTGTTAATTTTCGAGCGCCTGTTTAAGTTGGGCGAGCACTGGCAGCTTGATCATCGTCTTGAAGCGTTCTTTCGGCGGGTG‑AAACATTTTTCTCTCGGGCGCACG‑TTAGGCATGACCATTATTGC‑GATGGGCGTGACTTTTTTACTGTTACGCGCATTGCAGGGAGTATT‑GTTCAACGTTCCCACGCTACTGGTGTGGCTGCTGATTGGTTTGCTGTGTATTGGCGCAgg < 2:484782/251‑1 (MQ=255) cTATTTACAACCTTACTGGTGTTAATTTTCGAGCGCCTGTTTAAGTTGGGCGAGCACTGGCAGCTTGATCATCGTCTTGAAGCGTTCTTTCGGCGGGGG‑AAAAATTTTTTTCTCGGGGGCACG‑GTAGGCATGACCATTATTTC‑GATGGGGGGGGCTTTTTTACTGTTACGCGCATTTCCGGGGGTATT‑GTTTAACGTTTCCAAGCTACTGGGGGGGCTGCTGGTTGGTTTGCTGTGTATTTGCGCCGGTa > 1:568154/1‑250 (MQ=255) aatctcAACCTTACTGGTGTTAATTTTCGAGCGCCTGTTTAAGGTTGGCGAGCACTGGCAGCTTGATCATCGTCTTGAAGCGTTCTTTCGGCGGGTG‑AAACATTTTTCTCTCGGGCGCACG‑TTAGGCATGACCATTATTGC‑GATTGGCGTGACTTTTTTACTTTTACGCGCATTGCAGGGAGTATT‑GTGCAACGTTCCCACGCTACTGGTGTGGCTGCTGATTGGTTTGCTGTGTATTGGCGCAGGTaaa < 2:372323/245‑1 (MQ=255) aCCTTACTGGTGTTAATTTTCGAGCGCCTGTTTAAGTTGGGCGAGCACTGGCAGCTTGATCATCGTCTTGAAGCGTTCTTTCGGCGGGTG‑AAACATTTTTCTCTCGGGCGCACG‑TTAGGCATGACCATTATTGC‑GATGGGCGTGACTTTTTTACTGTTACGCGCATTGCAGGGAGTATT‑GTTCAACGTTCCCACGCTACTGGTGTGGCTGCTGATTGGTTTGCTGTGTATTGGCGCAGGTAAAGTTCGTCt < 2:613761/251‑1 (MQ=255) cTTACTGGTGTTAATTTTCGAGCGCCTGTTTAAGTTGTGCGAGCACTGGCAGCTTGATCATCGTCTTGAAGCGTTCTTTCGGCGGGTG‑AAACATTTTTCTCTCGGGCGCACG‑TTAGGCATTAACCTTATTTC‑GATGGGCGGGACTTTTTTACTGTTACGCGCCTTGCAGGGAGTATT‑TGTCAACGTTTCCCCTCTACTGGGGTGGCTGCTGATTGGTTTGCTGGGTATTGGGCCCGGTAAAGTTCGTCttt > 1:652362/1‑250 (MQ=255) cTGGTGTTAATTTTCGAGCGCCTGTTTAAGTTGGGCGAGCACTGGCAGCTTGATCATCGTCTTGAAGCGTTCTTTCGGCGGGTG‑AAACATTTTTTTCTCCGGCGCACG‑TTAGGCATGACCATTATTGC‑GATGGGCGGGACTTTTTTTCTGTTACGCGCCTTGCCGGGGGGATT‑TTTCAACGTTTCCACGCTAATGGGGTGGCCGCTGATTGGTTTGCTGTGTATTTGCGCAGGGAAAGTTCGTCTTCAttt > 1:468385/1‑250 (MQ=255) ggTGTTAATGTTCGAGCGCCTGTTTAAGTTGGGCGAGCTGTGGCAGCTTGATCATCGTTTTGAAGCGTTCTTTCGGCGGGTG‑AAACATTTTTCTCTCGGGCGCACG‑TTAGGCATGACCATTATTGC‑GATGGGCGTGACTTTTTTACTGTTACGCGCATTGCAGGGAGTATT‑GTTCAACGTTCCCACGCTACTGGTGTGGCTGCTGATTGGTTTGCTGTGTATTGGCGCAGGTAAAGTTCGTCTTCATTAt < 2:25106/250‑1 (MQ=255) gttgtAATTTTCGAGCGCCTGTTTAAGTTGGGCGGTCGCTTGTCGCGTGATCATCGTCCTGAAGCGTTCTTTCGGCGGGTG‑AAACATTTTTCTCTCGGGCGCACG‑TTAGGCATGACCATTATTGC‑GATGGGCGTGACTTTTTTACTGTTTCGCGCATTGCAGGGAGTATT‑GTTCAACGTTCCCACGCTACTGGTGTGGCTGCTGATTGGTTTGCTGTGTATTGGCGCAGGTAAAGTTCGTCTTCATTATCa < 2:501221/247‑1 (MQ=255) tgaaTTTTCGAGCGAGTGTTTAAGTTTGGCGAGCACTGGTAGCTTGATCATCGTCTTGAAGCGTTCTTTCGGCGGGTG‑AACCATTTTTCGCTCGGGCGCACG‑TTAGGCATGACCATTATGGC‑GATGGGCGTGACTTTTTTACTGTTACGCGCATTGCAGGGAGTATT‑GTTCAACGTTCACACGCTACTGGTGTGGCTGCTGATTGGTTTGCTGTGTATTGGCGCAGGTAAAGTTCGTCTTCATTATCATg < 2:137475/248‑1 (MQ=255) tAATTTTCGAGCGCCTGTTTAAGTTGGGCGAGCACTGGCAGCTTGATCATCGTCTTGAAGCGTTCTTTCGGCGGGTG‑AAACATTTTTCTCTCGGGCGCACG‑TTAGGCATGACCATTATTGC‑GATGGGCGTGACTTTTTTACTGTTACGCGCATTGCAGGGAGTATT‑GTTCAACGTTCCCACGCTACTGGTGTGGCTGCTGATTGGTTTGCTGTGTATTGGCGCAGGTAAAGTTCGTCTTCATTATCATGc < 1:255832/250‑1 (MQ=255) aTTTTCGAGCGCCTGTTTAAGTTGGGCGAGCACTGGCAGCTTGATCATCGTCTTGAAGCGTTCTTTCGGCGGGGG‑AAACATTTTTTTCTCGGGCGCACG‑TTTGGCATGACCCTTATTGC‑GATGGGCGGGACTTTTTTTCTTTTACGCGCATTGCAGGGAGGATT‑GTTCAACGTTCCCACGCTACTGGTGTGGCTGCTGGTTGGTTTTCTGTGTATTGGCGCAGGTAAAGTTCGTCTTTATTATCATTCttt > 1:196002/1‑250 (MQ=255) gcgcCTGTTTAAGTTGGGCGAGCACTGGCAGCTTGATCATCGTCTTGAAGCGTTCTTTCGGCGGGTG‑AAACATTTTTCTCTCGGGCGCACG‑TTAGGCATGACCATTATTGC‑GATGGGCGTGACTTTTTTACTGTTACGCGCATTGCAGGGAGTATT‑GTTCAACGTTCCCACGCTACTGGTGTGGCTGCTGATTGGTTTGCTGTGTATTGGCGCAGGTAAAGTTCGTCTTCATTATCATGCTTATCTGACAg < 2:234167/251‑1 (MQ=255) gcCTGTTTAAGTTGGGCGAGCACTGGCAGCTTGATCATCGTCTTGAAGCGTTCTTTCGGCGGGGG‑AAACATTTTTTTCTCGGGCGCACG‑TTAGGCATGACCATTATTGC‑GATGGGCGTGACTTTTTTTCTGTTACGCGCATTGCAGGGGGGATT‑GTTTAACGGTCCCACGCTTCTGGTGTGGCTGCTGGTTGGTTTTCTGTGGTTTGGGGCCGGTAAAGGTCGTCTTCCTTATCATggttttcttacaact > 1:137407/1‑237 (MQ=255) tAAGTTGGGCGAGCACTGGCAGCTTGATCATCGTCTTGAAGCGTTCTTTCGGCGGGTG‑AAACATTTTTCTCTCGGGCGCACG‑TTAGGCATGACCATTATTGC‑GATGGGCGTGACTTTTTTACTGTTACGCGCATTGCAGGGAGTATT‑GTTCAACGTTCCCACGCTACTGGTGTGGCTGCTGATTGGTTTGCTGTGTATTGGCGCAGGTAAAGTTCGTCTTCATTATCATGCTTATCTGACAGCTGCTTCa < 2:380670/250‑1 (MQ=255) tAAGTTGGGCGAGCACTGGCAGCTTGATCATCGTCTTGAAGCGTTCTTTCGGCGGGTG‑AAACATTTTTCTCTCGGGCGCACG‑TTAGGCATGACCATTATTGC‑GATGGGCGTGACTTTTTTACTGTTACGCGCATTGCAGGGAGTATT‑GTTCAACGTTCCCACGCTACTGGTGTGGCTGCTGATTGGTTTGCTGTGTATTGGCGCAGGTAAAGTTCGTCTTCATTATCATGCTTATCTGACAGCTGCTTCa < 1:367692/250‑1 (MQ=255) aaGTTGGGCGAGCACTGGCAGCTTGATCATCGTCTTGAAGCGTTCTTTCGGCGGGTG‑AAACATTTTTCTCTCGGGCGCACG‑TTAGGCATGACCATTATTGC‑GATGGGCGTGACTTTTTTACTGTTACGCGCATTGCAGGGAGTATT‑GTTCAACGTTCCCACGCTACTGGTGTGGCTGCTGATTGGTTTGCTGTGTATTGGCGCAGGTAAAGTTCGTCTTCATTATCATGCTTATCTGACAGCTGCTTCAc < 2:373727/250‑1 (MQ=255) gAGCACTGGCAGCTTGATCATCGTCTTGAAGCGTTCTTTCGGCGGGTG‑AAACATTTTTCTCTCGGGCGCACG‑TTAGGCATGACCATTATTGC‑GATGGGCGTGACTTTTTTACTGTTACGCGCATTGCAGGGAGTATT‑GTTCAACGTTCCCACGCTACTGGTGTGGCTGCTGATTGGTTTGCTGTGTATTGGCGCAGGTAAAGTTCGTCTTCATTATCATGCTTATCTGACAGCTGCTTCACGTAATGATAg < 2:37099/251‑1 (MQ=255) gAGCACTGGCAGCTTGATCATCGTCTTGAAGCGTTCTTTCGGCGGGTG‑AAAAATTTTTATCTCGGGCGCACG‑TTAGGCATGACCATTATTGC‑GATGGGCGTGACTTTTTTACTGTTACGCGCATTGCAGGGGGGATT‑TTTCCACGTTCCCACGCTACTGGGGTGGCTGCTGATTGGTTTTCTGTGTATTGGGGCAGGGAAAGTTCGTCTTCATTTTAATGCTTTTTTGACAGCTGCtttccggaattata > 1:349667/1‑238 (MQ=255) cACTGGCAGCTTGATCATCGTCTTGAAGCGTTCTTTCGGCGGGGG‑AAACATTTTTCTCTCGGGCGCACG‑TTAAGCATGACCATTATTGC‑GATGGGCGTGACTTTTTTTCTGTTACGCGCATTGCAGGGAGTATT‑GTTCAACGTTCCCACGCTACTGGTGTGGCTGCTGGTTGGTTTGCTGTGTATTGGCGCCGGGAAAAGTCGTCTTCATTATCATGCTTATCTGACAGCTGCTTCACGTAATGATAGccc > 1:799159/1‑250 (MQ=255) cgtattGAAGCGTTCTTTCGGCGGGTG‑AAACAGTTTTCTCGCGGGCGCACG‑TTAGGCATGACCATTATTGC‑GATGGGCGTGACTTTTTTACTGTTACGCGCATTGCAGGGAGTATT‑TTTCAACGTTCCCACGCTACTGGTGTGGCTGCTGATTGGTTTGCTGTGTATTGGCGCAGGTAAAGTTCGTCTTCATTATCATGCTTATCTGACAGCTGCTTCACGTAATGATAGCCATGCCCGTGCCACGAtgg < 2:453471/246‑1 (MQ=255) gTCTGGAAGCGTTCTTTCGGCGGGTG‑AAACATTTTTCTCTCGGGCGCACG‑TTAGGCATGACCATTATTGC‑GATGGGCGTGACTTTTTTACTGTTACGCGCATTGCAGGGAGTATT‑GTTCAACGTTCCCACGCTACTGGTGTGGCTGCTGATTGGTTTGCTGTGTATTGGCGCAGGTAAAGTTCGTCTTCATTATCATGCTTATCTGACAGCTGCTTCACGTAATGATAGCCATGCCCGTGCCACGAtggct < 2:785953/251‑1 (MQ=255) aagcggtttttCGGCGGTTT‑AAACATTTTTCTCTCGGTCGCACG‑TTAGGCATGACCATTAGTGC‑GATGGGCGTGACTTTTTTACTGTTACGCGCATTGCAGGGAGTATT‑GTTCAACGTTCCCACGCTACTGGTGTGGCTGCTGATTGGTTTGCTGTGTATTGGCGCAGGTAAAGTTCGTCTTCATTATCATGCTTATCTGACAGCTGCTTCACGTAATGATAGCCATGCCCGTGCCACGATTGCTGGCGaa < 2:519261/243‑1 (MQ=255) tCGGCGGGTG‑AAACATTTTTCTCTCGGGCGCACG‑TTAGGCATGACCATTATTGC‑GATGGGCGTGACTTTTTTACTGTTACGCGCATTGCAGGGAGTATT‑GTTCAACGTTCCCACGCTACTGGTGTGGCTGCTGATTGGTTTGCTGTGTATTGGCGCAGGTAAAGTTCGTCTTCATTATCATGCTTATCTGACAGCTGCTTCACGTAATGATAGCCATGCCCGTGCCACGATGGCTGGCGAACTCACCATg < 1:20502/250‑1 (MQ=255) g‑AAACATTTTTCTCTCGGGCGCACG‑TTAGGCATGACCATTATTGC‑GATGGGCGTGACTTTTTTACTGTTACGCGCATTGCAGGGAGTATT‑GTTCAACGTTCCCACGCTACTGGTGTGGCTGCTGATTGGTTTGCTGTGTATTGGCGCAGGTAAAGTTCGTCTTCATTATCATGCTTATCTGACAGCTGCTTCACGTAATGATAGCCATGCCCGTGCCACGATGGCTGGCGAACTCCCCATGATTCACGGcc > 2:364926/1‑250 (MQ=255) aaCATTTTTCTCTCGGGCGCACG‑TTAGGCATTACCATTATTGC‑GATGGGCGTGACTTTTTTACTGTTACGCGCATTGCAGGGAGTATT‑GTTCAACGTTCCCACGCTACTGGTGTGGCTGCTGATTGGTTTGCTGTGTATTGGCGCAGGTCAAGTTCGTCTTCATTATCATGCTTATCTGACAGCTGCTTCACGTAATGCAAGCCATGCCCGTGCCACGGTGTCTGGCGAACTCAACATGATTCCCGGCGTc > 2:277046/1‑251 (MQ=255) ttttCTCTCGGGCGCACG‑TTAGGCATGACCATTATTGC‑GATGGGCGTGACTTTTTTACTGTTACGCGCATTGCAGGGAGTATT‑GTTCAACGTTCCCACGCTACTGGTGTGGCTGCTGATTGGTTTGCTGTGTATTGGCGCAGGTAAAGTTCGTCTTCATTATCATGCTTATCTGACAGCTGCTTCACGTAATGATAGCCATGCCCGTGCCACGATGGCTGGCGAACTCACCATGATTCACGGCGTCCCgg < 1:177087/250‑1 (MQ=255) ttttCTCTCGGGCGCACG‑TTAGGCATGACCATTATTGC‑GATGGGCGTGACTTTTTTACTGTTACGCGCATTGCAGGGAGTATT‑GTTCAACGTTCCCACGCTACTGGTGTGGCTGCTGATTGGTTTGCTGTGTATTGGCGCAGGTAAAGTTCGTCTTCATTATCATGCTTATCTGACAGCTGCTTCACGTAATGATAGCCATGCCCGTGCCACGATGGCTGGCGAACTCACCATGATTCACGGCGTCCCGGc > 1:536120/1‑251 (MQ=255) ttCTCTCGGGCGCACG‑TTAGGCATGACCATTATTGC‑GATGGGCGTGACTTTTTTACTGTTACGCGCATTGCAGGGAGTATT‑GTTCAACGTTCCCACGCTACTGGTGTGGCTGCTGATTGGTTTGCTGTGTATTGGCGCAGGTAAAGTTCGTCTTCATTATCATGCTTATCTGACAGCTGCTTCACGTAATGATAGCCATGCCCGTGCCACGATGGCTGGCGAACTCACCATGATTCACGGCGTCCCGGCa < 2:309672/250‑1 (MQ=255) | GATTGATTGCTATCCGGATATCGCTAAAAACATGACGGGCCATTGTGATATTGCGCCGGATCGGAAAACCGATCCCGGTCCTGCATTTGATTGGGCACGGTTTCGTGTGCTGGTCAGCAAGGAGACAACATGACGCTATTTACAACCTTACTGGTGTTAATTTTCGAGCGCCTGTTTAAGTTGGGCGAGCACTGGCAGCTTGATCATCGTCTTGAAGCGTTCTTTCGGCGGGTG‑AAACATTTTTCTCTCGGGCGCACG‑TTAGGCATGACCATTATTGC‑GATGGGCGTGACTTTTTTACTGTTACGCGCATTGCAGGGAGTATT‑GTTCAACGTTCCCACGCTACTGGTGTGGCTGCTGATTGGTTTGCTGTGTATTGGCGCAGGTAAAGTTCGTCTTCATTATCATGCTTATCTGACAGCTGCTTCACGTAATGATAGCCATGCCCGTGCCACGATGGCTGGCGAACTCACCATGATTCACGGCGTCCCGGCA > NC_000913/119152‑119643 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |