mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.39.0
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,745,089 | 0 | A | C | 30.8% | 48.4 / 11.4 | 41 | V84G (GTG→GGG) | trmD | tRNA m(1)G37 methyltransferase |
| * | NC_000913 | 4,161,148 | 0 | G | A | 28.6% | 71.9 / 12.7 | 42 | E28K (GAA→AAA) | fabR | DNA‑binding transcriptional repressor FabR |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 15911 | NA (NA) | 8 (0.190) +TTTTTTCAA |
7/468 | 3.0 | NA | noncoding (525/1345 nt) | IS186 | repeat region |
| ? | NC_000913 | 15922 = | NA (NA) | noncoding (536/1345 nt) | IS186 | repeat region | |||||
| * | ? | NC_000913 | = 2558698 | 46 (1.070) | 5 (0.120) | 5/470 | 3.6 | 10.2% | intergenic (‑19/‑160) | eutB/intZ | ethanolamine ammonia‑lyase subunit alpha/putative phage integrase IntZ |
| ? | NC_000913 | 2565489 = | 44 (1.050) | coding (1396/1404 nt) | eutA | ethanolamine ammonia‑lyase reactivase EutA | |||||
| * | ? | NC_000913 | = 3337670 | 61 (1.410) | 3 (0.070) | 3/478 | 4.5 | 5.2% | coding (222/636 nt) | mlaC | intermembrane phospholipid transport system ‑ periplasmic binding protein |
| ? | NC_000913 | 3338046 = | 50 (1.180) | coding (416/552 nt) | mlaD | intermembrane phospholipid transport system, substrate binding protein MlaD | |||||
| * | ? | NC_000913 | 2288919 = | NA (NA) | 3 (0.070) | 3/484 | 4.5 | 12.5% | noncoding (1195/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | 3131469 = | 21 (0.490) | coding (940/1068 nt) | yghQ | putative transport protein YghQ | |||||
| * | ? | NC_000913 | = 1449807 | 39 (0.900) | 3 (0.070) | 3/478 | 4.5 | 7.8% | coding (1543/2274 nt) | tynA | copper‑containing amine oxidase |
| ? | NC_000913 | 1450108 = | 33 (0.780) | coding (1242/2274 nt) | tynA | copper‑containing amine oxidase | |||||
| * | ? | NC_000913 | 257908 = | NA (NA) | 3 (0.070) | 3/484 | 4.5 | 15.8% | noncoding (768/768 nt) | IS1 | repeat region |
| ? | NC_000913 | 771096 = | 16 (0.370) | intergenic (+485/‑362) | mngB/cydA | alpha‑mannosidase/cytochrome bd‑I subunit 1 | |||||