New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	257908 =	NA (NA)	3 (0.070)	3/484	4.5	15.8%	noncoding (768/768 nt)	IS1	repeat region
	?	NC_000913	771096 =	16 (0.370)					intergenic (+485/‑362)	mngB/cydA	alpha‑mannosidase/cytochrome bd‑I subunit 1
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

ATAATATAATTATAAGTTAACTAAATGTTAATATTGGCGGGGTGGATTTATGCCTTTATTAGTAATCCTGAAACTCTGCGTCGTATTAGCCAGTGACCAAAAAAAGAATTAAGGTCAACCGTGCTGTTTTTGCTTCGTCTCTTTTTATCTTTAATTGCCAACCGAAACTAATTTCAGCCTTATAACTCACACATTTTAAACATAAATGTCACTAAAGTTACCTTATTGAAACATGATTAACATAATTTGTAGGAATTGATATTTATCAATGTATAAGTCTTGGAAATGGGCATCAAAAAGAGATAAATTGTTCTCGATCAAATTGGCTGAAAGGCGGTAATTTAGCTATAAATTGATCACCGTCGAAAAATGCAAATTTGCTTCAACAAAAACCTGTTTATTGTAAGGATTTTGCGGCGTAATATATACGTGGGATCAATTTGAGTTTTTATTAACATGTTTGCAACCTTTCTTTACGCCGTTTTTGTGTGC  >  NC_000913/770855‑771346                                                                                                                                                                                                                                                  |                                                                                                                                                                                                                                                           ataatataatTATAAGTTAACTAAATGTTAATATTGGCGGGGTGGATTTATGCCTTTATTAGTAATCCTGAAACTCTGCGTCGTATTAGCCAGTGACCAAAAAAAGAATTAAGGTCAACCGTGCTGTTTTTGCTTCGTCTCTTTTTATCTTTAATTGCCAACCGAAACTAATTTCAGCCTTATAACTCACACATTTTAAACATAAATGTCACTAAAGTTACCTTATTGAAACATGATTAACATAATTTGTa                                                                                                                                                                                                                                                   <  1:258590/251‑1 (MQ=255)        aatTATAAGTTAACTAAATGTTAATATTGGCGGGGTGGATTTATTCCTTTTTTATTAATCCTGAAACTCTGCGGCGTATTAGCCAGTGACCCAAAAAAAAATTAAAGGCAACCGCGCTGTTTTTTCTTCGTCTCTTTTTATCTTTTATTTCCCACCGAAACTAATTTCCTCCTTTTAAATCCCCCATTTTTAACCAAAATAGCACTAAAATTACCTTATTTAAACATTATTAAAATAAtttttatgacttt                                                                                                                                                                                                                                            >  1:358882/1‑241 (MQ=255)               aGTTAACTAAATGTTAATATTGGCGGGGTGGATTTATGCCTTTATTAGTAATCCTGAAACTCTGCGTCGTATTAGCCAGTGACCAAAAAAAGAATTAAGGTCAACCGTGCTGTTTTTGCTTCGTCTCTTTTTATCTTTAATTGCCAACCGAAACTAATTTCAGCCTTATAACTCACACATTTTAAACATAAATGTCACTAAAGTTACCTTATTGAAACATGATTAACATAATTTGTAGGAATTGATATTTa                                                                                                                                                                                                                                     <  1:285102/251‑1 (MQ=255)                    aCTAAATGTTAATATTGGCGGGGTGGATTTTAGCCTTTTTTAATAAAACTGAAACTCTTCGTCGTATTAGCCAGTGACCAAAAAAAGAATTAAAGTCAACCGTGCTGTTTTTTCTTCGTCTCTTTTTATCTTTAATTTCCCACCGAAACTAATTTCAGCCTTTTAACTCACCCATTTTAAACATAAATGTCACTAAAGTTACCTTATTGTAACATGATTTACCTAATTTTTTGGAATTTATATTTATctat                                                                                                                                                                                                                                >  1:136223/1‑248 (MQ=255)                                 atTGGCGGGGTGGATTTATGCTTTTATTAGTAATACTGAAACTCTGCGTCGTATTAGCCAGTGACCAAAAAAAGAATTAAGGTCAACCGTGCTGTTTTTGCTTCGTCTCTTTTTATATTTAATTGCCAACCGAAACTAATTTCAGCCTTATAACTCACACATTTTAAACATAAATGTCACTAAAGTTACCTTAGTGAAACATGATTAACATAATTTGTAGGAATTGATATTTATCAATGTATAAGTCTTgg                                                                                                                                                                                                                   <  2:358882/251‑1 (MQ=255)                                                                                                                             tGTTTTTGCTTCGTCTCTTTTTATCTTTAATTGCCAACCGAAACTAATTTCAGCCTTATAACTCACACATTTTAAACATAAATGTCACTAAAGTTACCTTATTGAAACATGATTAACATAATTTGTAGGAATTGATATTTATCAATGTATAAGTCTTGGAAATGGGCATCAAAAGGAGATAAATTGTTCTCGATCAAATTGGCTGAAAGGCGGTAATTTAGCTATAAATTGATCACCGTCGAAAACTGCa                                                                                                                        >  1:435835/1‑250 (MQ=255)                                                                                                                              gTTTTTGCTTCGTCTCTTTTTATCTTTAATTGCCAACCGAAACTAATTTCAGCCTTATAACTAACACATTTTAAACATAAATGTCACTAAAGTTACCTTATTGAAACATGATTAACATAATTTGTAGGAATTGATATTTATCAATGTATAAGTCTTGGAAATGGGCATCAAAAAGAGATAAATTGTTCTCGATCAAATTGGCTGAAAGGCGGTAATTTAGCTATAAATTGATCACCGTCGAAAAATGCaaa                                                                                                                      <  1:442075/251‑1 (MQ=255)                                                                                                                                                    tCTTTAATTGCCAACCGAAACTAATTTCAGCCTTATAACTCACACATTTTAAACATAAATGTCACTAAAGTTACCTTATTGAAACATGATTAACATAATTTGTAGGAATTGATATTTATCAATGTATAAGTCTTGGAAATGGGCATCAAAACGAGATAAATTGTTCTCGATCAAATTGGCTGAAAGGCGGTAATTTAGCTATAAATTGATCACCGTCGAAAAATGCAAATTTGCTTCAACaaaacactgtt                                                                                                >  2:143691/1‑244 (MQ=255)                                                                                                                                                            tGCCAACCGAAACTAATTTCAGCCTTATAACTCACACATTTTAAACATAAATGTCACTAAAGTTACCTTATTGAAACATGATTAACATAATTTGTAGGAATTGATATTTATCAATGTATAAGTCTTGGAAATGGGCATCAAAAAGAGATAAATTGTTCTCGATCAAATTGGCTGAAAGGCGGTAATTTAGCTATAAATTGATCACCGTCGAAAAATGCAAATTTGCTTCAACAAAAACCTGTTTATTGTa                                                                                         >  1:407548/1‑250 (MQ=255)                                                                                                                                                                aaCCGAAACTAAATTCAGCCTTATAACTCACACATTTTAAACATAAATGTCACTAAAGTTACCTTATTGAAACATGATTAACATAAATTGTAGGAATTGATATTTATCAATGTATAAGTCTTGGAAATGGGCATCAAAAAGAGATAAATTGTTCTCGATCAAATTGGCTGAAAGGCGGTAATTTAGCTATAAATTGATCACCGTCGAAAAATGCAAATTTGCTTCAACAAAAACCTGTGTATTGTAAGGAt                                                                                    <  2:459958/251‑1 (MQ=255)                                                                                                                                                                        ataaattCAGCCTTATAACTCACACATTTTAAACATAAATGTCACTAAAGTTACCTTATTGAAACATGATTAACATAATTTGTAGGAATTGATATTTATCAATGTATAAGTCTTGGAAATGGGCATCAAAAAGAGATAAATTGTTCTCGATCAAATTGGCTGAAAGGCGGTAATTTAGCTATAAATTGATCACCGTCGAAAAATGCAAATTTGCTTCAACAAAAACCTGTTTATTGTAAGGATTTTgcggc                                                                            <  2:204564/246‑1 (MQ=255)                                                                                                                                                                               cAGCCTTATAACTCACACATTTTAAACATAAATGTCACTAAAGCTACCTTATTGAAACATGATTAACATAATTTGTAGGAATTGATATTTATCAATGTATAAGTCTTGGAAATGGGCATCAAAAAGAGATAAATTGTTCTCGATCAAATTGGCTGAAAGGCGGTAATTTAGCTATAAATTGATCACCGTCGAAAAATGCCAATTTGCTTCAACAAAAACCTGTTTATTGTAAGGATTTTGCAGCGTAatat                                                                     >  2:55446/1‑251 (MQ=255)                                                                                                                                                                                                 aTTTTAAACATAAATGTCACTAAAGTTACCTTATTTAAACATGATTAACATAATTTGTAGGAATTGATATTTATCAATGTATAAGTCTTGGAAATGGGCATCAAAAAGAGATAAATTGTTCTCGATCAAATTGGCTGAAAGGCGGTAATTTAGCTATAAATTGATCACCGTCGAAAAATGCAAATTTGCTTCAACAAAAGCCTGTTTATTGTAAGGATTTTGCGGCGTAATACATACGTGGGATCAATTTg                                                   <  2:175202/251‑1 (MQ=255)                                                                                                                                                                                                         cATAAATGTCACTAAAGTTACCTTATTGAAACATGATTAACATAATTTGTAGGAATTGATATTTATCAATGTATAAGTCTTGGAAATGGGCATCAAAAAGAGATAAATTGTTCTCGATCAAATTGGCTGAAAGGCGGTAATTTAGCTATAAATTGATCACCGTCGAAAAATGCAAATTTGCTTCAACAAAAACCTGTTTATTGTAAGGATTTTGCGGCGTAATATATACGTGGGATCAATTTGAGtttttt                                           >  1:319617/1‑250 (MQ=255)                                                                                                                                                                                                            aaaTGTAACTAAAGAAACCTGAATGAAACATGATTAACATAATTTGTAGGAATTGTTATTTATCAATGTAAAAGTCTTGGAAATGGGCATCACAAAGAGATAAATTGTTCTCGATCAAATGGGCTGGAAGGCGGAAATATAGATATAAATTGATCACCGTCGAAAAATGCAACTTTGCTTCAACAAAAACCTGTTAATTGTAAGGATTTTGCGGCGTAATATATACGTGGGATCAATTTGAGTTTttatt                                         >  2:37536/1‑250 (MQ=255)                                                                                                                                                                                                                      aaaGTTACCTTATTGAAACATGATTAACATAATTTGTAGGAATTGATATTTATCAATGTATAAGTCTTGGAAATGGGCATCAAAAAGAGATAAATTGTTCTCGATCAAATTGGCTGAAAGGCGGTAATTTAGCTATAAATTGATCACCGTCGAAAAATGCAAATTTGCTTCAACAAAAACCTGTTTATTGTAAGGATTTTGCGGCGTAATATATACGTGGGATCAATTTGAGTTTTTATTAACATGTTTg                               <  1:306872/250‑1 (MQ=255)                                                                                                                                                                                                                                                  aTAATTTGTAGGAATTGATATTTATCAATGTATAAGTCTTGGAAATGGGCCTCAAAAAGAGATAAATTGTTCTCGATCAAATTGGCTGAAAGGCGGTAATTTAGCTATAAATTGATCACCGTCGAAAAATGCAAATTTGCTTCACCAAAAACCTGTTTATTGTAAGGATTTTGCGGCGTAATATATACGTGGGATCAATTTGAGTTTTTATTAACATGTTTGCAACCTTTCTTTACGCCGTTTTTGTGTGc  >  2:146772/1‑251 (MQ=255)                                                                                                                                                                                                                                                  |                                                                                                                                                                                                                                                           ATAATATAATTATAAGTTAACTAAATGTTAATATTGGCGGGGTGGATTTATGCCTTTATTAGTAATCCTGAAACTCTGCGTCGTATTAGCCAGTGACCAAAAAAAGAATTAAGGTCAACCGTGCTGTTTTTGCTTCGTCTCTTTTTATCTTTAATTGCCAACCGAAACTAATTTCAGCCTTATAACTCACACATTTTAAACATAAATGTCACTAAAGTTACCTTATTGAAACATGATTAACATAATTTGTAGGAATTGATATTTATCAATGTATAAGTCTTGGAAATGGGCATCAAAAAGAGATAAATTGTTCTCGATCAAATTGGCTGAAAGGCGGTAATTTAGCTATAAATTGATCACCGTCGAAAAATGCAAATTTGCTTCAACAAAAACCTGTTTATTGTAAGGATTTTGCGGCGTAATATATACGTGGGATCAATTTGAGTTTTTATTAACATGTTTGCAACCTTTCTTTACGCCGTTTTTGTGTGC  >  NC_000913/770855‑771346

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.