| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 2288919 = | NA (NA) | 3 (0.070) | 3/484 | 4.5 | 12.5% | noncoding (1195/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | 3131469 = | 21 (0.490) | coding (940/1068 nt) | yghQ | putative transport protein YghQ | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
ATTTGATAACCGTCATTTAATACTGAGTATTCTGCGGCGCCATTCATTTCAATGTACTGATACCCTCCGTTAATTTCAGTATTATTACTTACACCAAATTCTTTTATATGCTGTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCAT‑AAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATG‑CCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCCCCAGTTTTTAGTGAGATCTCTCCCACTGACGTATCATTTGGTCCGCCCGAAACAGGTTGGCCAGCGTGAATAACATCGCCAGTTGGTTATCGTTTTTC > NC_000913/2288677‑2289155 | aTTTGATAACCGTCATTTAATACTGAGTATTCTGCGGCGCCATTCATTTCAATGTACTGATACCCTCCGTTAATTTCAGTATTATTACTTACACCAAATTCTTTTATATGCTGTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCAT‑AAACCAGCTGGATATCTTTTTCCAGGACAAAAACCTCCAATGTCTCACCATACTCAACACTTGATT‑CCACAGTTATGGGAGAATATAAAGAAAGTgg > 2:378886/1‑250 (MQ=255) aaCCGTCATTTAATACTGAGTATTCTGCGGCGCCATTCATTTCAATGTACTGATACCCTCCGTTAATTTCAGTATTATTACTTACACCAAATTCTTTTATATGCTGTTCTCCGCCAGGATTGAGTTTCGTATTAGTGGCGGTCCCAT‑AAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATG‑CCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAg < 1:96566/251‑1 (MQ=255) tAATACTGAGTATTCTGCGGCGCCATTCATTTCAATGTACTGATACCCTCCGTTAATTTCAGTATTATTACTTACACCAACTTCTTTTATATGCTGTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTTCCCT‑AAACCACCTGGCGATCTTTTTCCACGGGAACACCCTCAACTGGCTCACCCTCATCAACAGTAGCTC‑CCACTGGTATGGGAGCAAATTAGGAAGGTGGGAATAAGCGGGGAGAtt > 1:440814/1‑251 (MQ=255) tagaatttagcggcgCCATTCATTTCAATGTACTGATACCCTCCGTTAATTTCAGTATTATTACTTACACCAAATTCTTTTATATGCTGTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCAT‑AAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATG‑CCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTtctc < 2:128220/241‑1 (MQ=255) cggcgACAATCAATTCAATGTTCTGAGACCCTCCGGTAATTTCAGTATTATTACGTGCCCCAAATTCTTTTATATTCTGTTCTCCGCCAGGATTGATTTTCGTATTAGTGGCGGTCCCAT‑AAACCAGCTGGATATCTTTTGCCAGGACAACACCAGCAACGGTCTCACCATACTCAACAGTTGATG‑CCAATGTTATGGGTGAATATAAGTAAGGTGCGAATAAGCGGGGAAGGTCTTCTCGGCTTACTCAg < 2:300404/251‑1 (MQ=255) gcCATTCATTTCAATGTACTGATACCCTCCGTTAATTTCAGTATTATTACTTACACCAAATTCTTTTATATGCTGTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCCC‑AAACCACCTGGGTATCTTTTTTCAGGACAAAACCATCAACTTTCTCACCCTACTCACAAGTTTATG‑CCCATGCTCTGGGTGAATATAAGGAAGGTGCGAGTAAACGGGGGAATTCTTTTCCGCTggcccggtcat > 2:109623/1‑241 (MQ=255) ttCAATGTACTGATACCCTCCGTTAATTTCAGTATTATTACTTACACCAAATTCTTTTATATGCTGTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCAT‑AAGCCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATG‑CCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCatttcatttc < 1:345351/250‑1 (MQ=255) ttacgtattcccTCCGTTAATTTCAGTATTATTCCTTACACCAATTTCGTTTATATGCTGTTCTCCGCCAGTATTGATTTTCGTATTATTGGCGGCCCCAT‑AATCCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATG‑CCAATGCTATGGGTGAATATAAGGAAGGTGCGAATACGCGGGGAAATTCTTCGCGGCTGACTCAGTCATTTCATTTCTTCATg < 2:123155/241‑1 (MQ=38) gtattaCTTCCCCCAAATACTTTTATATGCTGTTCTCCGCCAGGATTGAGTTTCGTATTATTGGCGGTCCCAT‑AAACCAGCTGGATATCGTTGTCCAGGACAACACCATCAGCTGTCCCACCATACTCAACTGTTTATG‑CCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTTATTTCATTTCTTCATGTTTGAGCCGATTTTTTATCCAGTAAATg < 2:412350/249‑1 (MQ=37) ttttATATGCTGTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCATCAAACC‑GCTGGCTATCTTTTTTCCGGACAAAACCATCCACCTTCTCCACATACTCAACCGTTGATGACCAA‑GCTATGGGGGAATTTAAAGCAGAAGCGTATAAGCGGGGGACATCTTTTCGGCTGACTCAGTCATTTCATTTCTTCTTGTTTGGGCGGCTTTTTTTTTCCCTAAATTCCTTTCATCAGCCTAtttttt > 2:395932/1‑248 (MQ=255) gattgattCTCCTATTACTGGCGGTCCCAT‑AAACCAGCTGGATATCTTTTTACAAGACAACACCATCAACTGTCTCACCATACTCACCAGTTTATG‑CCAATGCTATGGGTGAATATAAGGAAGGTTCGAATAAGCGGGGAAATTCTTCTCGGCTGCCTCAGTCATTTCATTGCTTCATGTGTTAGCCGATTTTTTCTACCTTAAAAGCCTTGAATCAGCCTATTTAGACCGTTACTTCGCCTTTTAAGGct < 2:63146/251‑2 (MQ=21) ttCGTATTATTGGCGGTCCCCT‑AAACCCGCTGGATATCTTTTTTCAAGACAACACCATCCACTGTCTCACCACACTCCACAGTTTATG‑CCCATGCTATGGGAGAATATAAGGAAGGGGCGCATAAGCGGGGGAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCCTGTTTTTGCCGCTTTTTTTTCCCGTAAATTCCTTGAATCAGCCTATTTAGCCCGTTTCTTCTCCATTTCAGGATTTATcccc > 2:178057/1‑251 (MQ=18) cGGTCCCAT‑AAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATG‑CCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATCTAGACCGTTTCTTCGCCATTTAAGGCGTTATCCCCAGTTTTTAGTg > 1:299490/1‑249 (MQ=255) cccAT‑AAACAAGCTGGATATCGATTACCAGGACAACACCATCCACTGTCTCACCATACTCAACAGTTGATG‑CCAATGCTATGGGTGAATATACGGAAGGAGAGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGTTTTTTTCTCCAGTAAATGCCTTGAATCAGCCTATTTAGCACGTTTCTTCGCCATTGAAGTCGTTATCCCCAGTTTTTAGTGGGAtct > 2:218634/1‑251 (MQ=18) aGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATG‑CCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCCCCAGTTTTTAGTGAGATCTCTCCCACTg > 1:325407/1‑250 (MQ=255) tGGATATCTGTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATG‑CCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGACATTCTTCTCGGCTGACACAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTAACGGCGTTATCCCCAGTTTTTAGTGAGATCTCTCCCACTGACGt > 2:294724/1‑251 (MQ=255) ttttCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATG‑CCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCCCCAGTTTTTAGTGAGATCTCTCCCACTGACGTATCAt < 1:391134/247‑1 (MQ=255) cAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATG‑CCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCCCCAGTTTTTAGTGAGATCTCTCCCACTGACGTATCATTTGGTCCGc > 1:431904/1‑251 (MQ=255) gtactacacCATCAACTGTCTCACCATACTCAACAGGTGATT‑CCAATGCTATGGGGGAATATAAGGAAGGTTCGAATAAGCGGGGAAATTCTTCTCGTCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTTTTTAGACCGTTTCTGCGCCATTTAAGGCGTTATCCCCAGTTTTTAGTGAGATCTCTCCCACTTACGTATCATTTGGTCCGcct < 2:274662/246‑2 (MQ=17) ccatcagatgactcACCATACTCAACAGTTGATG‑CCACTGCTATGGGTGAATATAAGGAAGGTGCGAATGAGCGGGGAACTTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGGTTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACAGTTTCTTCTACATTTCAGGCGTTATCCCCAGTTTTAAGTGAGTTATATCCCAATGACGTATCATTTGGTCCGCCCGAAACAgg > 2:341854/12‑251 (MQ=14) cAACTGTCTCACCATACTCAACAGTTGATG‑CCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCCCCAGTTTTTAGTGAGATCTCTCCCACTGACGTATCATTTGGTCCGCCCGAAACAGGTTgg > 1:42026/1‑251 (MQ=255) aaCTGTCTCACCATACTCAACAGTTGATG‑CCAATGCTATGGGTGTATATCCGAAAGGAGCGAATAAGCGGGGCAATTCTTCGCGGCTGAGTCAGTCATTTCATTTCTTCATGTTTGGGCTGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCCCCAGTTTTTAGGGAGATCTCTCCCATCGACGTATCATTTGGTCCGCCCGACACCGGTTGGc > 1:988/1‑251 (MQ=14) cTGTCTCACCATACTCAACAGTTGATG‑CCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTACTTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTATACCGTTTCTTCGCCATTTAAGGCGTTATCCCCAGTTTTTAGTGAGTTCTCTCCCCCTGACGTATCATTTGGTCCGCCCGAAACAGGTCGGcc > 2:278992/1‑250 (MQ=255) ctcACCGTACTCAAAAGTTGATG‑CCAATGCTATGGGGGAATATACGGAAGGTGAGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTACATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAACTGCCATGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCCCAAGTTTTACGAGAGATCTCTCCCACTGACGTATCATTTGGTCCGCCCGAAACAGGTTGGcaggggt > 2:425014/1‑245 (MQ=14) cAGTTGATG‑CCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCCCCAGTTTTTAGTGAGATCTCTCCCACTGACGTATCATTTGGTCCGCCCGAAACAGGTTGGCCAGCGTGAATAACATCGCCa < 2:42026/251‑1 (MQ=255) tGATG‑CCAATGCTATGGGTGAATATAAGGAAGGTGCGCATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCCCCAGTTTTTAGTGAGATCTCTCCCACTGACGTATCATTTGGTCCGCCCGAAACAGGTTGGCCAGCGTGAATAACATCGCCAGTTg > 1:277485/1‑251 (MQ=255) aTGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGACTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCCCCAGTTTTTAGTGAGATCTCTCCCACTGACGTATCATTTGGTCCGCCCGAAACAGGTTGGCCAGCGTGAATAACATCGCCAGTTGGTTATCGTTTTTc < 1:246169/251‑1 (MQ=21) | ATTTGATAACCGTCATTTAATACTGAGTATTCTGCGGCGCCATTCATTTCAATGTACTGATACCCTCCGTTAATTTCAGTATTATTACTTACACCAAATTCTTTTATATGCTGTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCAT‑AAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATG‑CCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCCCCAGTTTTTAGTGAGATCTCTCCCACTGACGTATCATTTGGTCCGCCCGAAACAGGTTGGCCAGCGTGAATAACATCGCCAGTTGGTTATCGTTTTTC > NC_000913/2288677‑2289155 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |