New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	2288919 =	NA (NA)	3 (0.070)	3/484	4.5	12.5%	noncoding (1195/1195 nt)	IS5	repeat region
	?	NC_000913	3131469 =	21 (0.490)					coding (940/1068 nt)	yghQ	putative transport protein YghQ
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

AGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAAATCAGGTCATACGCTTCGAGATACTTAACGCCAAACACCAGCGAAATGAGCGGCTTGCCGACGATCAACACCGCGAGCGCCACCAGAATACCGATTCCGCCCGCCAGTAAACCGGACTTCACACCTAACAACCACGGTCTGGTGGTGCGCGGATCTAAACGCATCACCTCTGGGTAAAAACTTTTACCCAGCAAACCCGCTGGCGTTCCGGCGGCGTCGAAGAATGTCATGGCGATTTTAAATAACCCGGCGGCAGCGGGTCCTAACACGATCCCCACCAACACTGTGCTGCACGAGTTACGCGCCGACCAGATGGAGTGGGCAATGTTGGTTGACCAGACAAAACTCCACGCGCCT  >  NC_000913/3131238‑3131701                                                                                                                                                                                                                                        |                                                                                                                                                                                                                                         aGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAAATCAGGTCATACGCTTCGAGATACTTAACGCCAAACACCAGCGAAATGAGCGGCTTGCCGACGATCAACACCGCGAGCGCCACCAGAATACCGATTCCGCCCGCCAGTAAACCGGACTTCACACCTAACAACCACGGTCtggtg                                                                                                                                                                                                                       >  1:138900/1‑251 (MQ=255)    cagagtaaaGGCATTTAGGGGAAAAAAAATCGACAAAAAAAGAAAAAAATAAAATGACGGGGTCGGCCGAAAAAAATCCCCCCTCTTATCCCCACCTCCCCAAAATCAGCTCATACGCTTGGAGATTCGAAACACCAACCACCGGAGAAAGGGGCGGCTGGCCGACGAACAACACCGCGAGCCCCCCCAGAAAACCAATCCCGCCCGCCAGTAAACCGGACTTCACACCTAACAACCACGGTCTGgtggtg                                                                                                                                                                                                                    <  1:311543/244‑1 (MQ=255)                                                                                                               aGGTCATACGCTTCGAGATACTTAACGCCAAACACCAGCGAAATGAGCGGCTTGCCGACGATCAACACCGCGAGCGCCACCAGAATACCGATTCCGCCCGCCAGTAAACCGGACTTCACACCTAACAACCACGGTCTGGTGGTGCGCGGATCTAAACGCATCACct                                                                                                                                                                                              >  1:379207/1‑166 (MQ=255)                                                                                                                      aCGCTTCGAGATACTTAACGCCAAACACCAGCGAAATGAGCGGCTTGCCGACGATCAACACCGCGAGCGCCACCAGAATACCGATTCCGCCCGCCAGTAAACCGGACTTCACACCTAACAACCACGGTCTGGTGGTGCGCGGATCTAAACGCATCACCTCTGGGTAAAACCTTTTACCCAGCAAACCCGCTGGCGTTCCGGCGGCGTCGAAGACTGTCATGGCGATTTTAAATAACCCGGAGGCAGCgggg                                                                                                  >  2:464046/1‑250 (MQ=255)                                                                                                                          ttCGAGATACTTAACGCCAAACACCAGCGAAATGAGCGGCTTGCCGACGATCAACACCGCGAGCGCCACCAGAATACCGATTCCGCCCGCCAGTAAACCGGACTTCACACCTAACAACCACGGTCTGGTGGTGCGCGGATCTAAACGCATCACCTCTGGGTAAAAACTTTTACCCAGCAAACCCGCTGGCGTTCCGGCGGCGTCGAAGAATGTCATGGCGATTTTAAATAACCCGGCGGCAGCGGGTCCt                                                                                               >  1:389366/1‑250 (MQ=255)                                                                                                                             gagaTCCTTAACGCCAACCACCAGCGAAATGAGCGGCTTGCCGACGATCAACACCGCGAGCGCCCCCAGAATACCGATTCCGCCCGCCAGTAAACCGGACTTCACACCTAACAACCACGGTCTGGAGGTGCGCGGATCTAAACGCATCACCTCTGGGTAAAAACTTTTACCCAGCAAACCCGCTGGCGTTCCGGCGGCGTCGAAGAAAGTCATGGCGGTTTTAAATAACCCGGCGGCAGCGGGGCCTAac                                                                                            >  2:191633/1‑250 (MQ=255)                                                                                                                             gagaTACATAACGCCAAACACCAGCGTAATTAGAGGCTCGCCGACGCTCAACACCGCGAACGCCACCAGAATACCCCTTCCGCACGCCAGTCAACCGGACCTCACACCTAACAACCACGGTCCGGTGCTGCGCGGCTATAAACGCATCACCTCTGGGTAAAAACTTTTACCCCGCAAACCACCTGGCGTTACTGCGGAGCCGAAAAATGTCCAGGAGATTTTATATAAACAGGCGGC‑GCggggtccga                                                                                             >  2:67282/1‑242 (MQ=255)                                                                                                                                                   aGCGAAATGAGCGGCTTGCCGACGATCAACACCGCGAGCGCCACCAGAATACCGACTCCGCCCGCCAGTAAACCGGACATCAAACCTAACAACCACGGTCTGGTGGTGCGCGGATCTAAACGCATCACCTCTGGGTAAAAACTTTTACCCAGCAAACCCGCTGGCGTTCCGGCGGCGTCGAAGAATGTCATGGCGATTTTAAATAAACCGGCGGCAGCGGGTCCTAACACGATCCCCACCAACACTGtgct                                                                     >  1:311082/1‑251 (MQ=255)                                                                                                                                                              cGGCTTGCCGACGATCAACACCGCGAGCGCCACCAGAATACCGATTCCGCCCGCCAGTAAACCGGACTTCACACCTAACAACCACGGTCTGGTGGTGCGCGGATCTAAACGCATCACCTCTGGGTAAAAACTTTTACCCAGCAAACCCGCTGGCGTTCCGGCGGCGTCGAAGAATGTCATGGCGATTTTAAATAACCCGGCGGCAGCGGGTCCTAACACGATCCCCACCAACACTGTGCTGCaagatcggg                                                          >  2:117352/1‑243 (MQ=255)                                                                                                                                                                         cgaTCAACACCGCGAGCGCCACCAGAATACCGATTCCGCCCGCCAGTAAACCGGACTTCCCACCTAACAACCACGGTCTGGTGGTgc                                                                                                                                                                                                                   >  2:398761/1‑87 (MQ=255)                                                                                                                                                                              aaCACCGCGCGCGCCACAAGAATCCCGCTTCCGCCCGCCCGTAAACCGGACTTCACAACTAACAAACACGGTCTGGTGGTGCGCGGATCTAAACGCATCACCTCTGGGTAAACACTTTTACCCCGCAAACCCGCTGGCGTTCAGGCGGCGTAGAAGAATGTCATGGAGATTTTAAATAACCCGGCGGCAACGGGTCCTACCACGATCCCCACCAACAATGTGCTGCAAGGGTAACGCGCCGAcaccatgt                                           >  2:297783/1‑243 (MQ=255)                                                                                                                                                                                  ccGCGAGCGCCACCAGAATACCGATTCCGCCCGCCAGTAAACCGGACTTCACACCTAACAACCACGGTCTGGTGGTGCGCGGATCTAAACGCATCACCTCTGGGTAAAAACTTTTACCCAGCAAACCCGCTGGCGTTCCGGCGGCGTCGAAGAATGTCATGGCGATTTTAAATAACCCGGCGGCAGCGGGTCCTAACACGATCCCCACCAACACTGTGCTGCACGAGTTACGCGCCGACCAGATGGAGTgg                                      >  1:72488/1‑251 (MQ=255)                                                                                                                                                                                       cccccaacataactcccctccccacccgccAGTAAACCGGACTTCACACCTAACAACCACGGTCTGGTGGTGCGCGGATCTAAACGCATCCCCTCTGGGTAAAAACTTTTACCCAGCAAACCCGCTGGCGTTCCGGCGGCGTCGAAGAATGTCATGGCGATTTTAAATAACCCGGCGGCAGCGGGTCCTAACACGATCCCCACCAACACTGTGCTGCACGAGTTACGCGCCGACCAGATGGAGTGGGCAAt                                 <  2:204485/227‑1 (MQ=255)                                                                                                                                                                                       aGCGCCACCAGAATACCGATTCCGCCCGCCAGTAAACCGGACTTCACACCTAACAACCACGGTCTGGTGGTGCGCGGATCTAAACGCATCACCTCTGGGTAAAAACTTTTACCCAGCAAACCCGCTGGCGTTCCGGCGGCGTCGAAGAATGTCATGGCGATTTTAAATAACCCGGCGGCAGCGGGTCCTAACACGATCCCCACCAACACTGTGCTGCACGAGTTACGCGCCGACCAGATGGAGTGGGCAAt                                 >  1:392735/1‑251 (MQ=255)                                                                                                                                                                                         cccccaacgtctacctattacccccgccAGGAAACCGGACTTCACCCCTAACAACCACGGTCTGGGGGTGCGCTGATCTAAACGCATCACCACTGGGTAAAAACTTTTACCCAGCAAACCCGCTGGCGTTCCGGCGGCGTCGAAGAATGTCATGGCGATTTTAAATAACCCGGCGGCAGCGGGTCCTAACACGATCCCCACCAACACTGTGCTGCACGAGTTACGCGCCGACCAGATGGAGTGTGCAATgt                               <  2:46042/229‑1 (MQ=255)                                                                                                                                                                                          gcCACCAGAATACCGATTCCGCCCGCCAGTAAACCGGACTTCACACCTAACAACCACGGTCTGGTGGTGCGCGGATCTAAACGCATCACCTCTGGGTAAAAACTTTTACCCAGCAAACCCGCTGGCGTTCCGGCGGCGTCGAAGAATGTCATGGCGATTTTAAATAACCCGGCGGCAGCGGGTCCTAACACGATCCCCACCAACACTGTGCTTCACGAGTTACGCGCCGACCAGCTGGAGTGGGCAATgtt                              >  1:226873/1‑251 (MQ=255)                                                                                                                                                                                                   acactgcccccgcccgcCAGTAAACCGGACTTCACACCTAACAACCACGGTCTGGTGGTGCGCGGATCTAAACGCATCACCTCTGGGTAAAAACTTTTACCCAGCAAACCCGCTGGCGTTCCGGCGGCGTCGAAGAATGTCATGGCGATTTTAAATAACCCGGCGGCAGCGGGTCCTAACACGATCCCCACCAACACTGTGCTGCACGAGTTACGCGCCGACCAGATGGAGTGGGCAATGTTGGTTGACCa                     <  1:207148/242‑1 (MQ=255)                                                                                                                                                                                                   aTACCGATTCCGCCCGCCAGTAAACCGGACTTCACACCTAACAACCACGGTCTGGTGGTGCGCGGATCTAACCGCATCACCTCTGGGTAAAAACTTTTACCCAGCAAACCCGCTGGCGTTCCGGCGGCGTCGAAGAATGTCATGGCGATTTTAAATAACCCGGCGGCAGCGGGTCCTAACACGATCCCCACCCACACTGTGCTGCACGAGTTACGCGCAGACCAGAGGGAGTGGGCCATGATGGGTGAcc                      >  2:162462/1‑250 (MQ=255)                                                                                                                                                                                                              gcccgccAGTAAACCGGACTTCACACCTAACAACCACGGTCTGGTGGTGCGCGGATCTAAACGCATCACCTCTGGGTAAAAACTTTTACCCAGCAAACCCGCTGGCGTTCCGGCGGCGTCGAAGAATGTCATGGCGCTTTTACATAACCCGGCGGCAGCGGGTCCTAACACAATCCCCACCAACACTGTGCTGCACGAGTTACGCGCCGACCAGATGGAGTGGGCAAGGTTGGATGACCAGACAAAACTcc          >  1:78910/1‑251 (MQ=255)                                                                                                                                                                                                                ccgccAGTAAACCGGACTTCACACCTAACCACCACGGTCTGGTGGTGCGCGGATCTAAACGCCTCACCTCTGGGTAAAAACTTTTACCCAGCAAACCCGCTGGCGTGCCGGCGGCGTCGAAGAATGTCATGGCGATTTTAAATAACCCGGCGGCAGCGGGTCCTAACACGATCCCCACCAACACTGTGATGCACGAGTTACGCGCCGACCAGATGGAGTGGGCAATGTTGGTTGACCAGACAAAACTCCAc        >  1:343532/1‑251 (MQ=255)                                                                                                                                                                                                                      gTAAACCGGACTTCACACCTAACAACCACGGTCTGGTGGTGCGCGGATCTAAACGCATCACCTCTGGGTAAAAACTTTTACCCAGCAAACCCGCTGGCGTTCCGGCGGCGTCGAAGAATGTCATGGCGATTTTAAATAACCCGGCGGCAGCGGGTCCTAACACGATCCCCACCAACACTGTGCTGCACGAGTTACGCGCCGACCAGATGGAGTGGGCAATGTTGGTTGACCAGACAAAACTCCACGCGCCt  <  1:464046/251‑1 (MQ=255)                                                                                                                                                                                                                                        |                                                                                                                                                                                                                                         AGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAAATCAGGTCATACGCTTCGAGATACTTAACGCCAAACACCAGCGAAATGAGCGGCTTGCCGACGATCAACACCGCGAGCGCCACCAGAATACCGATTCCGCCCGCCAGTAAACCGGACTTCACACCTAACAACCACGGTCTGGTGGTGCGCGGATCTAAACGCATCACCTCTGGGTAAAAACTTTTACCCAGCAAACCCGCTGGCGTTCCGGCGGCGTCGAAGAATGTCATGGCGATTTTAAATAACCCGGCGGCAGCGGGTCCTAACACGATCCCCACCAACACTGTGCTGCACGAGTTACGCGCCGACCAGATGGAGTGGGCAATGTTGGTTGACCAGACAAAACTCCACGCGCCT  >  NC_000913/3131238‑3131701

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.