mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.39.0
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 181 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 579,271 | 0 | G | A | 63.2% | 13.7 / 14.6 | 19 | H108H (CAC→CAT) | ybcV | DUF1398 domain‑containing protein YbcV |
| * | NC_000913 | 579,385 | 0 | A | G | 63.2% | 7.6 / 16.8 | 19 | N70N (AAT→AAC) | ybcV | DUF1398 domain‑containing protein YbcV |
| * | NC_000913 | 1,423,338 | 0 | G | C | 60.6% | 10.6 / 42.5 | 33 | intergenic (+26/‑62) | ydaW/rzoR | putative uncharacterized protein YdaW/putative prophage outer membrane lipoprotein RzoR |
| * | NC_000913 | 579,099 | 0 | A | . | 59.5% | 7.0 / 71.3 | 37 | intergenic (‑206/+85) | borD/ybcV | prophage lipoprotein BorD/DUF1398 domain‑containing protein YbcV |
| * | NC_000913 | 579,285 | 0 | T | C | 58.8% | 9.3 / 10.5 | 17 | I104V (ATT→GTT) | ybcV | DUF1398 domain‑containing protein YbcV |
| * | NC_000913 | 581,042 | 0 | T | G | 57.1% | ‑3.0 / 27.1 | 28 | L70R (CTG→CGG) | nohD | putative DNA‑packaging protein NohD |
| * | NC_000913 | 581,056 | 0 | A | G | 56.0% | ‑5.2 / 28.3 | 25 | T75A (ACA→GCA) | nohD | putative DNA‑packaging protein NohD |
| * | NC_000913 | 580,020 | 0 | G | A | 55.9% | 7.3 / 36.5 | 34 | R47R (AGG→AGA) | ybcW | uncharacterized protein YbcW |
| * | NC_000913 | 580,115 | 0 | C | T | 55.9% | 15.3 / 35.3 | 34 | intergenic (+29/+136) | ybcW/ylcI | uncharacterized protein YbcW/DUF3950 domain‑containing protein YlcI |
| * | NC_000913 | 580,119 | 0 | A | G | 55.9% | 12.2 / 42.2 | 34 | intergenic (+33/+132) | ybcW/ylcI | uncharacterized protein YbcW/DUF3950 domain‑containing protein YlcI |
| * | NC_000913 | 580,120 | 0 | C | T | 55.9% | 3.3 / 43.0 | 34 | intergenic (+34/+131) | ybcW/ylcI | uncharacterized protein YbcW/DUF3950 domain‑containing protein YlcI |
| * | NC_000913 | 579,134 | 0 | T | C | 55.2% | 0.6 / 36.0 | 30 | intergenic (‑241/+50) | borD/ybcV | prophage lipoprotein BorD/DUF1398 domain‑containing protein YbcV |
| * | NC_000913 | 580,830 | 0 | T | A | 54.5% | 1.3 / 24.5 | 22 | intergenic (‑385/‑4) | ylcI/nohD | DUF3950 domain‑containing protein YlcI/putative DNA‑packaging protein NohD |
| * | NC_000913 | 580,831 | 0 | G | A | 54.5% | 5.1 / 28.2 | 22 | intergenic (‑386/‑3) | ylcI/nohD | DUF3950 domain‑containing protein YlcI/putative DNA‑packaging protein NohD |
| * | NC_000913 | 581,073 | 0 | G | A | 54.5% | ‑4.8 / 26.8 | 23 | G80G (GGG→GGA) | nohD | putative DNA‑packaging protein NohD |
| * | NC_000913 | 1,423,404 | 0 | G | T | 54.0% | 16.5 / 45.1 | 37 | R2L (CGA→CTA) | rzoR | putative prophage outer membrane lipoprotein RzoR |
| * | NC_000913 | 1,423,284 | 0 | A | C | 53.6% | 13.7 / 33.5 | 28 | N178T (AAC→ACC) ‡ | ydaW | putative uncharacterized protein YdaW |
| * | NC_000913 | 579,127 | 0 | T | C | 53.3% | 3.4 / 34.7 | 30 | intergenic (‑234/+57) | borD/ybcV | prophage lipoprotein BorD/DUF1398 domain‑containing protein YbcV |
| * | NC_000913 | 579,146 | 0 | A | G | 53.3% | 10.8 / 26.2 | 30 | intergenic (‑253/+38) | borD/ybcV | prophage lipoprotein BorD/DUF1398 domain‑containing protein YbcV |
| * | NC_000913 | 1,423,283 | 0 | A | C | 50.0% | 18.0 / 33.9 | 28 | N178H (AAC→CAC) ‡ | ydaW | putative uncharacterized protein YdaW |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 62378 | 56 (1.650) | 4 (0.120) | 4/486 | 2.6 | 8.3% | coding (887/2907 nt) | rapA | RNA polymerase‑binding ATPase and RNAP recycling factor |
| ? | NC_000913 | 88275 = | 32 (0.940) | coding (248/1005 nt) | cra | DNA‑binding transcriptional dual regulator Cra | |||||