New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 62378	56 (1.650)	4 (0.120)	4/486	2.6	8.3%	coding (887/2907 nt)	rapA	RNA polymerase‑binding ATPase and RNAP recycling factor
	?	NC_000913	88275 =	32 (0.940)					coding (248/1005 nt)	cra	DNA‑binding transcriptional dual regulator Cra
Rejected: Frequency below/above cutoff threshold.

GAAACTGGATGAAATCGCTCGGCTGGCGGGAGTGTCGCGGACCACTGCAAGCTATGTTATTAACGGCAAAGCGAAGCAATACCGTGTGAGCGACAAAACCGTTGAAAAAGTCATGGCTGTGGTGCGTGAGCACAATTACCACCCGAACGCCGTGGCAGCTGGGCTTCGTGCTGGACGCACACGTTCTATTGGTCTTGTGATCCCCGATCTGGAGAACACCAGCTATACCCGCATCGCTAACTATCTTGAACGCCAGGCGCGGCAACGGGGTTATCAACTGCTGATTGCCTGCTCAGAAGATCAGCCAGACAACGAAATGCGGTGCATTGAGCACCTTTTACAGCGTCAGGTTGATGCCATTATTGTTTCGACGTCGTTGCCTCCTGAGCATCCTTTTTATCAACGCTGGGCTAACGACCCGTTCCCGATTGTCGCGCTGGACCGCGCCCTCGATCGTGAACACTTCACCAGCGTGGTTGGTGCCGATCAGG  >  NC_000913/88030‑88520                                                                                                                                                                                                                                                      |                                                                                                                                                                                                                                                      gAAACTGGATGAAATCGCTCGGCTGGCGGGAGTGTCGCGGACCACTGCAAGCTATGTTATTAACGGCAAAGCGAAGCAATACCGTGTGAGCGACAAAACCGTTGAAAAAGTCATGGCTGTGGTGCGTGAGCACAATTACCACCCGAACGCCGTGGCAGCTGGGCTTCGTGCTGGACGCACACGTTCTATTGGTCTTGTGATCCCCGATCTGGAGAACACCAGCTATACCCGCATCGCTAACTATCTTGAAc                                                                                                                                                                                                                                                  >  1:232217/1‑251 (MQ=255)  aaaCTGGATGCAATCTCTCGGCTGGCTGGAGTGTCGCGGACCTCTGCAAGCTATGTTATTAACGGCAAAGCGAAGCAATTCCGTGTGAGCGACAAACCCGTTGAAAAAGTCATGGCTTTGGTGCGTGAGCACAATTACCCCCCGATCGCCGTGGCAGCTGGTCTTCGGTCGGGACGCACACGTTCTATTGGTCTTGTGATCCTCGATCTGGAGATCACCTGCTATACCCGCATCGCTAACTATCTTGAACg                                                                                                                                                                                                                                                 <  1:310847/251‑1 (MQ=255)      tGGATGAAATCGCTCGGCTGGCGGGAGTGTCGCGGACCACTGCAAGCTATGTTATTAACGGCAAAGCGAAGCAATACCGTGTGAGCGACAAAACCGTTGAAAAAGCCATGGCTGTGGTGCGTGAGCACAATTACCACCCGAACGCCGTGGCAGCTGGGCTTCGTGCTGGACGCACACGTTCTATTGGTCTTGTGATCCCCGATCTGGCGAACACCAGCTATACCCGCATCGCTAACTATCTTGAACGcc                                                                                                                                                                                                                                               >  1:331694/1‑249 (MQ=255)                 atgttcagttcgtcattgctcagtttgtttcctgccagcagcatggcaacggcgtccgcaaccggacgataatttttctgctcttcaacgaactgcgcaaaatcgtggaaacggttcgggtccagcagacgcagacgggcgaagtggctttccatccccagctgttccggggtcgcggtcagcagcagaacgcccggcacgggctctgccagttgttcaatggtctgatTTGAACGCCAGGGGCGGCTACg                                                                                                                                                                                                                                  <  2:170446‑M2/22‑1 (MQ=255)                             ggAGTGTCGCGGACCACTGCAAGCTATGTTATTAACGGCAAAGCGAAGCAATACCGAGTGAGCGACAAAACCGTTGAAAAAGTCATGGCTGTGGGGCGTGAGCACAATTACCACCCGAACGCCGTGGCAGCTGGGCTTCGTGCTGGACGCACACGTTCTATTGGTCTTGTGATCCCCGATCTGGAGAACACCAGCTATACCCGCATCGCTAACTATCTTGATCGCCAGGAGCGGCAACGGGGGTATCAAct                                                                                                                                                                                                                      >  1:346428/1‑251 (MQ=255)                                    cgcgGACCACTGCAAGCTATGTTATTAACGGCAAAGCGAAGCAATACCGTGTGAGCGACAAAACCGTTGAAAAAGTCATGGCTGTGGTGCGTGAGCACAATTACCACCCGAACGCCGTGGCAGCTGGGCTTCGTGCTGGACGCACACGTTCTATTGGTCTTGTGATCCCCGATCTGGAGAACACCAGCTATACCCGCATCGCTAACTATCTTGAACGCCAGGCGCGGCAACGGGGTTATCAACTGCTGAtt                                                                                                                                                                                                               <  1:13817/251‑1 (MQ=255)                                     gcgGACCACTGCAAGCTATGTTATTAACGGCAAAGCGAAGCAATACCGTGTGAGCGACAAAACCGTTGAAAAAGTCATGGCTGTGGTGCGTGAGCACAATTACCACCCGAACGCCGTGGCAGCTGGGCTTCGTGCTGGACGCACACGTTCTATTGGTCTTGTGATCCCCGATCTGGAGAACACCAGCTATACCCGCATCGCTAACTAGCTTGAACGCCAGGCGCGGCAACGGGGTTATCAACTGCTGATTg                                                                                                                                                                                                              <  1:318475/251‑1 (MQ=255)                                       ggACCACTGCAAGCTATGTTATTGCCGGCAAGGCGAAGCACTACCGTGTGACCGACAACACCGTTGAAAAAGTCATGGATGTGGCGCGGGGGCACAATTACCACCCGAACGCCGTGGCAGCTGGGCTTCGTGCTGGACGCACACGTTCTATTGGTATTGTGATCCCCGATCTGGAGAAAACCAGATATACCGGCGTCGCTAACTATCTTGAACCCCGGGCGCGGCAACGGGGTTATCACCTGCTGATTGcc                                                                                                                                                                                                            >  2:28932/1‑251 (MQ=255)                                            aCTGCAAGCTATGTTATTAACGGCAAAGCGAAGCAATACCGTGTGAGAGACAAAACCGGTGAAAAAGAAATGGCTGTGGTGCGTGAGAACAATTACCACCCGAAAGCCGTGGCAGCTGGGCTTCGTGCTGGACGCAAACGTTCTATTGATCTTGTGATCCCCGATCTGGAGAACACCAGCTATACCCGCATCGCTAACTATCTTGAGAGCAAGGCGCGGCTACGGGGTTATCAACTGCTGATTGACTgatc                                                                                                                                                                                                       >  1:313870/1‑248 (MQ=255)                                                              aaCGGCAAAGCGAAGCAATACCGTGTGAGCGACAAAACCGTTGAAAAAGTCATGGCTGTGGTGCGTGAGCACAATTACCACCCGAACGCCGTGGCAGCTGGGCTTCGTGCTGGACGCACACGTTCTATTGGTCTTGTGATCCCCGATCTGGAGAACACCAGCTATACCCGCATCGCTAACTATCTTGAACGCCAGGCGCGGCAACGGGGTTATCAACTGCTGATTGCCTGCTCAGAAGATCAGCCAGACa                                                                                                                                                                                      >  1:80499/1‑250 (MQ=255)                                                                                 aCCGTGTGAGCGACAAAACCGTTGAAAAAGTCATGGCTGTGGTGCGTGAGCACAATTACCACCCGAACGCCGTGGCAGCTGGGCTTCGTGCTGGACGCACACGTTCTATTGGTCTTGTGATCCCCGATCTGGAGAACACCAGCTATACCCGCATCGCTAACTATCTTGAACGCCAGGCGCGGCAACGGGGTTATCAACTGCTGATTGCCTGCTCAGAAGATCAGCCAGACAACGAAATGCGGTGCATTGAg                                                                                                                                                                  <  2:266992/251‑1 (MQ=255)                                                                                    gtgggAGCGACAAAACCGTTGAAAAAGTCATGGCTGTGGTGCGTGAGCACAATTACCACCCGAACGCCGTGGCAGCTGGGCTTCGTGCTGGACGCACACGTTCTATTGGTCTTGTGATCCCCGATCTGGAGAACACCAGCTATACCCGCATCGCTAACTATCTTGAACGCCAGGAGCGGCAACGGGGTTATCAACTGCTGATTGCCTGCTCAGAAGATCAGCCAGACAACGAAATGCGGTGCATTGAGCAc                                                                                                                                                               <  1:73330/247‑1 (MQ=255)                                                                                             aCAAAACCGTTGAAAAAGTCATGGCTGTGGTGCGTGAGCACAATTACCACCCGAACGCCGTGGCAGCTGGGCTTCGTGCTTGACGCACACGTTCTATTGGTCTTGTGATCCCCGATCTGGAGAACACCAGCTATACCCGCATCGCTAACTATCTTGAACGCCAGGCGCGTCAACGGGGTTATCAACTGCTGATTGCCTGCTCAGAAGAGCAGCCAGACAACGAAATGCGGTGCATTGAGCACCTTTTACAg                                                                                                                                                      <  1:159754/251‑1 (MQ=255)                                                                                               tgctcttaaacgcactgaggcaaatcgtggaaccggctcgggtccagaagacgcagacgggcgccgtggctttccatcccccgctgttccggggtcgcggtcagcagcagaacgccaggcacgtgctctgccagttgttcactggcctgatTTGAACGCCAGGCGCGGCAACGGGCTTATCAACTGCTGCTTGCCTGCTCAGAAGATCAGCCAGACAACGAAATGCGGTGCATTGCGCACCTTTTCCAGCg                                                                                                                                                    >  2:175450‑M2/152‑251 (MQ=255)                                                                                                       tGAAAAAGTCATGGCTGTGGTGCGTGAGCACAATTACCACCCGAACGCCGTGGCAGCTGGGCTTCGTGCTGGACGCACACGTTCTATTGGTCTTGTGATCCCCGATCTGGAGAACACCAGCTATACCCGCATCGCTAACTATCTTGAACGCCAGGCGCGGCAACGGGGTTATCAACTGCTGATTGCCTGCTCAGAAGATCAGCCAGACAACGAAATGCGGTGCATTGAGCACCTTTTACAGCGTCAGGTTg                                                                                                                                            >  1:363213/1‑251 (MQ=255)                                                                                                                            gCGTGAGCACAATTACCACCCGAACGCCGTGGCAGCTGGGCTTCGTGCTGGACGCACACGTTCTATTGGTCTTGTGATCCCCGATCTGGAGAACACCAGCTATACCCGCATCGCTAACTATCTTGAACGCCAGGCGCGGCAACGGGGTTATCAACTGCTGATTGCCTGCTCAGAAGATCTGCCAGACAACGAAATTCGGTGCATTGATCAGCTTTTACAGCGTCAGGTTGATGCCATTATTGTTTCGAcgt                                                                                                                       <  1:358521/251‑1 (MQ=255)                                                                                                                              gTGAGCACAATTACCACCCGAACGCCGTGGCAGCTGGGCTTCGTGCTGGACGCACACGTTCTATTGGTCTTGTGATCCCCGATCTGGAGAACACCAGCTATACCCGCATCGCTAACTATCTTGAACGCCAGGCGCGGCAACGGGGTTATCAACTGCTGATTGCCTGCTCAGAAGATCAGCCAGACAACGAAATGCGGTGCATTGAGCACCTTTTACAGCGTCAGGTTGATGCCATTATTGTTTCGCcgtcg                                                                                                                     >  2:169262/1‑251 (MQ=255)                                                                                                                               tGAGCACAATTACCACCCGAACGCCGTGGCAGCTGGGCTTCGTGCTGGACGCACACGTTCTATTGGTCTTGTGATCCCCGATCTGGAGAACACCAGCTATACCCGCATCGCTAACTATCTTGAACGCCAGGCGCGGCAACGGGGTTATCAACTGCTGATTGCCTGCTCAGAAGATCAGCCAGACAACGAAATGCGGTGCATTGAGCACCTTTTACAGCGTCAGGTTGATGCCATTATTGTTTCGAcgtcgt                                                                                                                    >  2:326556/1‑251 (MQ=255)                                                                                                                                      gggtccagcagacgccgacgggcgacgtggctttccatccccagctgttccggggtcgcggtcagaagccgaacgcccggcacgtgctctgccagttgatcaatggcctgatTTGAACGCCAGGCGCGGCAACGGGGTTATCAACTGCTGATTGCCTGCTCAGAAGATCAGCCAGACAACGAAATGCGGTGCATTGAGCACCTTTTACAGCGTCAGGTTGATGCCATTCTTGTTTCGACGTCGTTGcctcc                                                                                                             >  2:225749‑M2/113‑251 (MQ=255)                                                                                                                                                    cGCCGTGGCAGCTGGGCTTCGTGCTGGACGCACACGTTCTATTGGTCTTGTGATCCCCGATCTGGAGAACACCAGCTATACCCGCATCGCTAACTATCTTGAACGCCAGGCGCGGCAACGGGGTTATCAACTGCTGATTGCCTGCTCAGAAGATCAGCCAGACAACGAAATGCGGTGCATTGAGCACCTTTTACAGCGTCAGGTTGATGCCATTATTGTTTCGACGTCGTTGCCTCCTGAGCATCCttttt                                                                                               >  2:277863/1‑251 (MQ=255)                                                                                                                                                    cGCCGTGGCAGCTGGGCTTCGTGCTGGACGCACACGTTCTATTGGTCTTGTGATCCCCGATCTGGAGAACACCAGCTATACCCGCATCGCTAACTATCTTGAACGCCAGGCGCGGCAACGGGGTTATCAACTGCTGATTGCCTGCTCAGAAGATCAGCCAGACAACGAAATGCGGTGCATTGAGCACCTTTTACAGCGTCAGGTTGATGCCATTATTGTTTCGACGTCGTTGCCTCCTGAGCATCCttttt                                                                                               <  1:255095/251‑1 (MQ=255)                                                                                                                                                    cGCCGTGGCAGCTGGGCTTCGGGCTGGACCCACACGTACTATTGGTCTTGTGATCCCCGATCTGGAGAACCCCAGCTATACCCGCATCGCTAACTTTCTTGAACGCCAGGCGCGGCAACGGGGTTATCAACGGCTGATTGCCTGCTCAGAAGATCAGCCAGACAACGAAATGCGGTGGAGTGAGCACCTTTTACAGCGGCAGGTTGATGCCATTATTGTTTCGACGTCGTTGCCTCCTTAGCATCCttttt                                                                                               <  2:23004/251‑1 (MQ=255)                                                                                                                                                     gCCGTGGCAGCTGGGCTTCGTGCTGGACGCACACGTTCTATTGGTCTTGTGATCCCCGATCTGGAGAACACCAGCTATACCCGCATCGCTAACTATCTTGAACGCCAGGCGCGGCAACGGGGTTATCAACTGCTGATTGCCTGCTCAGAAGATCAGCCAGACAACGAAATGCGGTGCATTGAGCACCTTTTACAGCGTCAGGTTGATGCCATTATTGTTGCGACGTCGTTGCCTCCTGAGCATCCTTTTTa                                                                                              <  1:153006/251‑1 (MQ=255)                                                                                                                                                                tGGGCTTCGTGCTGGACGCACACGATCTATTGGTCTTGTGATCCCCGATCTGGAGAACACCAGCTATACCCGCATCGCTAACTATCTTGAACGCCAGGCGCGGCAACGGGGTTATCAACTGCTGATTGCCTGCTCAGAAGATCAGCCAGACAACGAAATGCGGTGCATTGAGCACCTTTTACAGCGTCAGGTTGATGCCATTATTGTTTCGACGTCGTTGCCTCCTGAGCATCCTTTTTATCAACGCTggg                                                                                   >  2:361304/1‑251 (MQ=255)                                                                                                                                                                         tGCTGGACGCACACGTTCTATTGGTCTTGTGATCCCCGATCTGGAGAACACCAGCTATACCCGCATCGCTAACTATCTTGAACGCCAGGCGCGGCAACGGGGTTATCAACTGCTGATTGCCTGCTCAGAAGATCAGCCAGACAACGAAATGCGGTGCATTGAGCACCTTTTACAGCGTCAGGTTGATGCCATTATTGTTTCGACGTCGTTGCCTCCTGAGCATCCTTTTTATCAACGCTGGGCTAACGAcc                                                                          >  2:8756/1‑251 (MQ=255)                                                                                                                                                                           tccccagctgttccggggtcgcggtctgcagcagtacgcccgccacccgctctgccagttgttcaatggcctgatTTGAACGCCAGGCGCCGCAACGGGGGTATCAACTGCTGATTGCCTGCTCAGAAGATCAGACAGACAACGAAATGCGGTGCATTGCGCACCTTTTACAGCGTCAGATTGGTGCCATTATTGTTTCGACGTCGTTTCCTCCTGAGCATCCTTTTTATCAACGCTGGGCTAACGACCCg                                                                        >  2:147075‑M2/76‑251 (MQ=255)                                                                                                                                                                                                     gtgATCCCCGATCTGGAGAACACCAGCTATACCCGCATCGCTAACTATCTTGAACGCCAGGCGCGGCAACGGGGTTATCAACTGCTGATTGCCTGCTCAGAAGATCAGCCAGACAACGAAATGCGGTGCATTGAGCACCTTTTACAGCGTCAGGTTGATGCCATTATTGTTTCGACGTCGTTGCCTCCTGAGCATCCTTTTTATCAACGCTGGGCTAACGACCCGTTCCCGATTGTCGCGCTGGACCgcgc                                              >  1:349446/1‑251 (MQ=255)                                                                                                                                                                                                     gtgATCCCCGATCTGGAGAACACCAGCTATACCCGCATCGCTAACTATCTTGAACGCCAGGCGCGGCAACGGGGTTATCAACTGCTGATTGCCTGCTCAGAAGATCAGCCAGACAACGAAATGCGGTGCATTGAGCACCTTTTACAGCGTCAGGTTGATGCCATTATTGTTTCGACGTCGTTGCCTCCTGAGCATCCTTTTTATCAACGCTGGGCTAACGACCCGTTCCCGATTGTCGCGCTGGACCgcgc                                              >  1:184563/1‑251 (MQ=255)                                                                                                                                                                                                       gATCCCCGATCTGGAGAACACCAGCTATACCCGCATCGCTAACTATCTTGAACGCCAGGCGCGGCAACGGGGTTATCAACTGCTGATTGCCTGCTCAGAAGATCAGCCAGACAACGAAATGCGGTGCATTGAGCACCTTTTACAGCGTCAGGTTGATGCCATTATTGTTTCGACGTCGTTGCCTCCTGCGCATCCTTTTTATCAACGCTGGGCTAACGACCCGTTCCCGCTTGTCGCGCTGGACCGCGccc                                            >  2:192915/1‑251 (MQ=255)                                                                                                                                                                                                           cccGATCTGGAGAACACCAGCTATACCCGCATCGCTAACTATCTTGAACGCCAGGCGCGGCAACGGGGTTATCAACTGCTGATTGCCTGCTCAGAAGATCAGCCAGACAACGAAATGCGGTGCATTGAGCACCTTTTACAGCGTCAGGTTGATGCCATTATTGTTTCGACGTCGTTGCCTCCTGAGCATCCTTTTTATCAACGCTGGGCTAACGACCCGTTCCCGATTGTCGCGCTGGACCGCGCCCTCg                                         >  2:225653/1‑250 (MQ=255)                                                                                                                                                                                                                   ggAGAACACCAGCTATACCCGCATCGCTAACTATCGTGAACGCCAGGCGCGGCAACGGGGTTATCAACTGCTGATTGCCTGCTCAGAAGATCAGCCAGACAACGAAATGCGGTGCATTGAGCACCTTTTACAGCGTCAGGTTGATGCCATTATTGTTTCGACGTCGTTGCCTCCTGAGCATCCTTTTTATCAACGCTGGGCTAACGACCCGTTCCCGATTGTCGCGCTGGACCGCGCCCTCGATCGTGAac                                <  2:22247/251‑1 (MQ=255)                                                                                                                                                                                                                               cTATACCCGCATCGCTAACTATCTTGAACGCCAGGCGCGGCACCGGGGTTATCAACTGCTGATTGCCTGCTCAGAAGATCAGCCAGACAACGAAATGCGGTGCATTGAGCACCTTTTACAGCGTCAGGTTGATGCCATTATTGTTTCGACGTCGTTGCCTCCTGAGCATCCTTTTTATCAACGCTGGGCTAACGACCCGTTCCCGATTGTCGCGCTGGACCGCGCCCTCGATCGTGAACACTTCACCAGCg                    >  1:53007/1‑251 (MQ=255)                                                                                                                                                                                                                               cTATACCCGCATCGCTAACTATCTTGAACGCCAGGCGCGGCAACGGGGTTATCAACTGCTGATTGCCTGCTCAGAAGATCAGCCAGACAACGAAATGCGGTGCATTGAGCACCTTTTACAGCGTCAGGTTGATGCCATTATTGTTTCGACGTCGTTGCCTCCTGAGCATCCTTTTTATCAACGCTGGGCTAACGACCCGTTCCCGCTTGTCGCGCTGGACCGCGCCCTCGATCGTGAACACTTCACCAGCg                    >  2:17751/1‑251 (MQ=255)                                                                                                                                                                                                                                               aaCTATCTTGAACGCCAGGCGCGGCAACGGGGTTATCAACTGCTGATTGCCTGCTCAGAAGATCAGCCAGACAACGAAATGCGGTGCATTGAGCACCTTTTACAGCGTCAGGTTGATGCCATTATTGTTTCGACGTCGTTGCCTCCTGAGCATCCTTTTTATCAACGCTGGGCTAACGACCCGTTCCCGATTGTCGCGCTGGACCGCGCCCTCGATCGTGAACACTTCACCAGCGTGGTTGGTGCCGATc     >  1:306973/1‑250 (MQ=255)                                                                                                                                                                                                                                               aaCTATCTTGAACGCCAGGCGCGGAAACGGGGTTATCAACTGCTGATTGCCTGCTCAGAAGATCAGCCAGACAACGAAATGCGGTGCATTGAGCACCTTTTACAGCGTCAGGTTGATGCCATTATTGTTTCGACGTCGTTGCCTCCTGAGCATCCTTTTTATCAACGCTGGGCTAACGACCCGTTCCCGATTGTCGCGCTGGTCCGCGCCCTCGATCGTGAACACTTCACCAGCGTGGTTGGTGCCGATc     <  1:361693/250‑1 (MQ=255)                                                                                                                                                                                                                                                 cTATCTTGAACGCCAGGCGCGGCAACGGGGTTATCAACTGCTGATTGCCTGCTCAGAAGATCAGCCAGACAACGAAATGCGGTGCATTGAGCACCTTTTACAGCGTCAGGTTGATGCCATTATTGTTTCGACGTCGTTGCCTCCTGAGCATCCTTTTTATCAACGCTGGGCTAACGACCCGTTCCCGATTGTCGCGCTGGACCGCGCCCTCGATCGTGAACACTTCACCAGCGGGGTTGGTGCCGATCAgg  >  2:228454/1‑251 (MQ=255)                                                                                                                                                                                                                                                      |                                                                                                                                                                                                                                                      GAAACTGGATGAAATCGCTCGGCTGGCGGGAGTGTCGCGGACCACTGCAAGCTATGTTATTAACGGCAAAGCGAAGCAATACCGTGTGAGCGACAAAACCGTTGAAAAAGTCATGGCTGTGGTGCGTGAGCACAATTACCACCCGAACGCCGTGGCAGCTGGGCTTCGTGCTGGACGCACACGTTCTATTGGTCTTGTGATCCCCGATCTGGAGAACACCAGCTATACCCGCATCGCTAACTATCTTGAACGCCAGGCGCGGCAACGGGGTTATCAACTGCTGATTGCCTGCTCAGAAGATCAGCCAGACAACGAAATGCGGTGCATTGAGCACCTTTTACAGCGTCAGGTTGATGCCATTATTGTTTCGACGTCGTTGCCTCCTGAGCATCCTTTTTATCAACGCTGGGCTAACGACCCGTTCCCGATTGTCGCGCTGGACCGCGCCCTCGATCGTGAACACTTCACCAGCGTGGTTGGTGCCGATCAGG  >  NC_000913/88030‑88520

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.