mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.39.0
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,296,060 | 0 | C | T | 50.0% | ‑5.4 / 15.0 | 16 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| * | NC_000913 | 2,331,664 | 1 | . | T | 30.8% | 11.3 / 11.5 | 13 | intergenic (‑1867/+2672) | yfaQ/yfaT | tandem DUF2300 domain‑containing protein YfaQ/DUF1175 domain‑containing protein YfaT |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3170294 | 30 (2.570) | 3 (0.260) | 3/298 | 0.9 | 9.0% | coding (467/660 nt) | qseB | DNA‑binding transcriptional activator QseB |
| ? | NC_000913 | = 3170402 | 31 (2.710) | coding (575/660 nt) | qseB | DNA‑binding transcriptional activator QseB | |||||
| * | ? | NC_000913 | = 302638 | 11 (0.940) | 3 (0.260) | 3/304 | 1.0 | 19.4% | intergenic (‑65/‑353) | paoA/yagU | aldehyde dehydrogenase, Fe‑S subunit/DUF1440 domain‑containing inner membrane protein YagU |
| ? | NC_000913 | = 1924823 | 14 (1.200) | coding (147/375 nt) | yobA | copper‑binding protein | |||||