| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,331,664 | 1 | . | T | 30.8% | 11.3 / 11.5 | 13 | intergenic (‑1867/+2672) | yfaQ/yfaT | tandem DUF2300 domain‑containing protein YfaQ/DUF1175 domain‑containing protein YfaT |
| Reads supporting (aligned to +/- strand): ref base . (4/5); new base T (2/2); total (6/7) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.11e-01 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
TGCTGAATATTCTGCGTCAGCGAAATATAATTCGCCCCTTTGTGCAGCGTCAGCGTCTGGCGCATCTCAGCGCCTGCAAATTTAGTCACCAGCGCCACCGGTTCGTTATCCTGCTGACTGAAGATAAACAGTCCTGCCGCCGGTTTGTCGCCCACGCGATACACCGTTGGCATACTCCACTTCATGTAGAGATTTTTTTCCGAACGCAGATAAGCACGCCCCTGC‑CCGACCAGCCCGTCGCCGTTCATCCCACGCGCGGTGATACGCCAGCGGGTTAACGAATCAGGCATCAGGAACGTGAAATACGCTTTGCCTTGTTTATCGGTTGTGAGTGACGGCATCCATGCCGCGGTATCCACCTCTTCACGCCGTGGACGTTCAAGCATTTTTACTCGCCGCTCGCTGCGGTTAGTTGCGCCAGGCGCAACCGGCTCGCTGGAGAGCGCCTGGTCGTAGCTGATAAACGACAG > NC_000913/2331440‑2331909 | tGCTGAATATGCTGCGTCAGCGAAATAGAATGCGCCCCTTTGTGCAGCTTCAGCGTCTGGCGCATACCAGCGCCTGCAAATTGAGTCACCAGCGCCACCGGTTCCTTATCCTGCGGACTGAAGATAAACAGTCCTACCGCCGTTTTTTCGCCTACGCGATACACCGTTGGCATACTCCCCTTCATGTAAATATTTTTTTCCGAACTCCTATAGCCACGCCCCTGC‑CCGACCAGCCCTTCGTCGTCCATcc < 1:207350/250‑1 (MQ=255) cGAAATATAATTCGCCCCTTTGTGCAGCGTCAGCGTCTGGCGCATCTCAGCGCCTGCAAATTTCGTCACCAGCGCCACCGGTTCGTTATCCTGCTGACTGAAGATAAACAGTCCTGCCGCCGGTTTGTCGCCCACGCGATACACCGTTGGCATACTCCACTTCATGTAGAGATTTTTTTCCGAACGCAGATAAGCACGCCCCTGCTCCGACCAGCCCGTCGcc > 1:58394/1‑223 (MQ=255) cGAAATATAATTCGCCCCTTTGTGCAGCGTCAGCGTCTGGCGCATCTCAGCGCCTGCAAATTTAGTCACCAGCGCCACCGGTTCGTTATCCTGCTGACTGAAGATAAACAGTCCTGCCGCCGGTTTGTCGCCCACGCGATACACCGTTGGCATACTCCACTTAATGTAGAGATTTTTTTCCGAACGCAGATAAGCACGCCCCTGCTCCGACCAGCCCGTCGcc > 1:58390/1‑223 (MQ=255) nggntttngnncnntccnaGCGCCTGCAAATTTAGTCACNNGCGCCACCGNTTCTTTATCCTGCTGACTGAAGATAAACAGTCCTGCCGCCGTTTTGTCGCCCCNCCGCTACCCNNTTNATATTNTNNNCNNNATNTAGAGATTTTTTTCCGAACNCANNTAAGCANGCCCCTGCTCCGACCAGCCCGTCGcc < 2:58390/175‑1 (MQ=255) nggnttcNGNNGNNTCTNAGCGCCTGCAAATTTAGTCACNNGCGCCACCGNTTCGTTATCCTGCTGACTGAAGATAAACAGTCCTGCCGCCGGTTTGTCGCCCANGCGATACCCNNTTNGCATTNTNNNCNNNATNTAGAGATTTTTTTCCGAACNCANNTAAGCANGCCCCTGCTCCGACCAGCCCGACGcc < 2:58394/188‑1 (MQ=255) gTTATCCTGCTGACTGAAGATAAACAGTCCTGCCGCCGGTTTGTCGCCCACGCGATACACCGTTGGCATAATCAACTTCATGTAGAGATTTTTTTCCGAACACAGATAAGCACGCCCATGC‑CCGACCAGCCCGTCGCCGTTCATCCCAcgcg > 1:244752/1‑152 (MQ=255) tGTCGCCCACGCGAGACACCGTTGGCATACTCCACTGCATGTAGAGATTTTTTTCCGAACGCAGATAAGCACGCCCCTGC‑CCGACCAGCCCGTCGCCGTTCATCCCACGCGCGGTGATACGCCAGCGGGTTAACGAATCAGGCATCAGGAACGTGAAATACGCTTTGCCTTGTTTATCGGTTGTGAGTGACGGCATCCATGCCGCGGTATCCACCTCTTCACGCCGTGGACGTTCAAGCATTTGTACTng < 1:215265/250‑1 (MQ=255) gTCGCCCACGCGATACACCGTTGGCATACTCCACTTCATGTAGAGATTTTTTTCCGAACGCAGATAAGCACGCCCCTGC‑CCGACCAGCCCGTCGCCGTTCATCCCACGCGCGGTGATACGCCAGCGGGTTAACGAATCAGGCATCAGGAACGTGAAATACGCTTTGCCTTGTTTATCGGTTGTGAGTGACGGCATCCATGCCGCGGTATCCACCTCTTCACGCCGTGGACGTTCAAGCATTTTTACTcgc < 1:5638/250‑1 (MQ=255) gCATACTCCACTTCATGTAGAGATTTTTTTCCGAACGCAGATAAGCACGCCCCTGC‑CCGACCAGCACGTCGCCGTTCATCCCACGCGCGGTGATACGCCAGCGGGTTAACGAATCCGGCATCAGGAACGTGAANTACNNNNNGcnn > 2:173304/1‑144 (MQ=255) ataccccccTTCATTTAGAGATTTTTTTCCGAACGCAGATAAGCACGCCCCTGC‑CCGACCAGCCCGTCGCCGTTCATCCCACGCGCGGTGATACGCCAGCGGGTTAACGAATCAGGCATCAGGAACGTGAAATACGCTTTGCCTTGTTTATCGGTTGTGAGTGACGGCATCCATGCCGCGGTATCCACCTCTTCACGCCGTGGACGTTCAAGCATTTTTACTCGCCGCTCGCTGCGGTTAGTTGCGCCAgn < 1:173304/243‑2 (MQ=255) aantttncnngNNCGCNGATAAGCACGCCCCTTC‑CCGCNNATCCAGTCGNCGTTCATCCCACGCGCGGTGATACGCCAGCGAGTTAACGAATCAGGCATCAGGNACTTGATATNNGCNTTGCCNTNNNTNNNGGNTGTGAGTGACGGCATCCATNCCNNGCTGTCNGCCGCTTCACGCCGAGGACGTCCAAg < 2:62848/182‑1 (MQ=255) ttCCGAACGCAGATAAGCACGCCCCTGC‑CCGACCAGCCCGTCGCCGTTc > 2:20631/1‑49 (MQ=255) cccTGC‑CCGACCAGCCCGTCGCCGTTCATCCCACGCGCAGTGATACGCCAGCGGGTTAACGCATCAGGCATCAGGAACGTGAAATACGCTTTGCCTTGTTTCTCGGTTGTGAGTGACGGCATCCATGCCGCGGTATCCACCTCTTCACGCCGTGGACGTTCAAGCATTTTTACTCGCCGCTCGCTGCGGTTAGTTGCGCCAGGCGCAACCGGCTCGCTGGAGAGCGTCTGGTCGTAGATGATAAACgtgcg > 1:200941/1‑247 (MQ=255) | TGCTGAATATTCTGCGTCAGCGAAATATAATTCGCCCCTTTGTGCAGCGTCAGCGTCTGGCGCATCTCAGCGCCTGCAAATTTAGTCACCAGCGCCACCGGTTCGTTATCCTGCTGACTGAAGATAAACAGTCCTGCCGCCGGTTTGTCGCCCACGCGATACACCGTTGGCATACTCCACTTCATGTAGAGATTTTTTTCCGAACGCAGATAAGCACGCCCCTGC‑CCGACCAGCCCGTCGCCGTTCATCCCACGCGCGGTGATACGCCAGCGGGTTAACGAATCAGGCATCAGGAACGTGAAATACGCTTTGCCTTGTTTATCGGTTGTGAGTGACGGCATCCATGCCGCGGTATCCACCTCTTCACGCCGTGGACGTTCAAGCATTTTTACTCGCCGCTCGCTGCGGTTAGTTGCGCCAGGCGCAACCGGCTCGCTGGAGAGCGCCTGGTCGTAGCTGATAAACGACAG > NC_000913/2331440‑2331909 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |