New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 3170294	30 (2.570)	3 (0.260)	3/298	0.9	9.0%	coding (467/660 nt)	qseB	DNA‑binding transcriptional activator QseB
	?	NC_000913	= 3170402	31 (2.710)					coding (575/660 nt)	qseB	DNA‑binding transcriptional activator QseB
Rejected: Frequency below/above cutoff threshold.

TGATCCTGACCGCGCGCGATGCGCTGGCGGAACGTGTAGAAGGGCTGCGTCTGGGAGCTGACGATTATCTGTGTAAACCTTTTGCGTTGATAGAAGTCGCCGCCAGGCTGGAAGCTCTGATGCGCCGAACCAACGGCCAGGCCAGCAACGAGCTGCGCCACGGTAACGTCATGCTCGACCCCGGCAAACGTATCGCCACGCTGGCTGGCGAACCCTTAACACTGAAACCAAAAGAATTTGCCCTGCTGGAATTACTGATGCGTAACGCTGGTCGGGTACTGTCGCGCAAACTGATTGAAGAGAAACTGTATACCTGGGACGAAGAGGTCACCAGTAATGCCGTTGAAGTGCATGTGCATCATCTGCGACGCAAACTCGGTAGTGATTTTATTCGTACCGTGCATGGTATTGGTTACACATTAGGTGAGAAATGAAATTTACCCAACGTCTTAGTCTGCGCGTCAGGCTGACGCTAATCTTTTTAATTCTGG  >  NC_000913/3170054‑3170544                                                                                                                                                                                                                                                 |                                                                                                                                                                                                                                                           tGATCCTAACCGCGCGCGATGCGCTGGCGGAAAGTGTAGACGGGCTGCGTATGGGAGCTGACGATTATCTGTGTAAACCTTTTGCGTTAATAGAAGTCGCAGCCAGGCTGGAAGCTCTGATGCGCCGAACCAACGGCCAGGCCAGCAACGAGCTGCGCCACGGTAACGTCATGCTCGACACCGGCAAACGCATCGCCACGCTGGCTGGCGAAACCTTAACACTGAAACCAAAAGAATTTGACCTGCTGGa                                                                                                                                                                                                                                                   >  1:100178/1‑250 (MQ=255)                 cgATGCGCTGGCGGAACGTGTAGAAGGGCTGCGTCTGGGAGCTGACGATTATCTGTGTAAACCTTTTGCGTTGATAGAAGTCGCCGCCAGGCTGGAAGCTATGATGCGCCGAACCAACGGCCAGGCCAGCAACGAGCTGCGCCACGGTAACGTCATGCTCGACCCCGGCAAACGTATCGCCACGCTGGCTGGCGAACCCTTAACACTGAAACCAAAAGAATTTGCCCTGCTGGAATTACTGATGCGTAACg                                                                                                                                                                                                                                  >  1:145763/1‑251 (MQ=255)                     gcgcTGGCGGAACGTGTAGAAGGGATGAGTCTGGGAGCTGACGATTATCTGTGTAAACCTTTTGCGTTGATAGAAGTCGCCGCCAGGGTGGCAGCTCTGATGCGCCGAACCAACGGCCAGGCCAGCAACGAGCTGCGCCACGGTAACGTCATGCTCGACCCCGGCAAACGTATCGCCACGCTGGCTGGCGAACCCTTAACACTGAAACCAAAAGAATTTGCCCTGCTGGCATTACTGTTGCGTAACGCTgg                                                                                                                                                                                                                              >  1:226780/1‑251 (MQ=255)                              gAACGTGTAGAAGGGCTGCGTCTGGGAGCTGACGATTATCTGTGTAAACCTTTTGCGTTGATAGAAGTCGCCGCCAGGCTGGAAGCTCTGATGCGCCGAACCAACGGCCAGGCCAGCAACGAGCTGCGCCACGGTAACGTCATGCTCGACCCCGGCAAACGTATCGCCACGCTGGCTGGCGAACCCTTAACACTGAAACCAAAAGAATTTGCCCTGCTGGAATTACTGATGCGTAACGCTGGTCGGGTACt                                                                                                                                                                                                                     >  1:193643/1‑251 (MQ=255)                                  gtgtAGAAGGGCTGCGTCTGGGAGCTGACGATTATCTGTGTAAACCTTTTGCGTTGATAGAAGTCGCCGCCAGGCTGGAAGCTCTGATGCGCCGAACCAACGGCCAGGCCAGCAACGAGCTGCGCCACGGTAACGTCATGCTCGACCCCGGCAAACGTATCGCCACGCTGGCTGGCGAACCCTTAACACTGAAACCAAAAGAATTTGCCCTGCTGTAATTACTGATGCGTAACGCTGGTCGAGTACTGTcg                                                                                                                                                                                                                 <  1:228185/251‑1 (MQ=255)                                    gtAGAAGGGCTGCGTCTGGGAGCTGACGATTATCTGGGTAAACCTTTTGCGTTGATAGAAGTCGCCGCCAGGCTGGAAGCTCTGATGCGCCGAACCAACGGCCAGGCCAGCAACGAGCTGCGCCACGGTAACGTCATGCTCGACCCCGGCAAACGTATCGCCACGCTGGCTGGCGAACCCTTAACACTGAAACCAAAAGAATTTGCCCTGCTGGAATTACTGATGCGTAACGCTGGTCGGGTACTGTcgc                                                                                                                                                                                                                <  1:139245/250‑1 (MQ=255)                                                                                   tGCGTTGATAGAAGTCGCCGCCAGGCTGGAAGCTCTGATGCGCCGAACCAACGGCCAGGCCAGCAACGAGCTGCGCCACGGTAACGTCATGCTCGACCCCGGCAAACGTATCGCCACGCTGGCTGGCGAACCCTTAACACTGAAACCAAAAGAATTTGCac                                                                                                                                                                                                                                                          <  1:256682‑M1/161‑3 (MQ=255)                                                                                   tGCGTTGATAGAAGGCGCCGCCAGGCTGGAAGCTCTGATGCGCCGAACCAACGGCCAGGCCAGCAACGAGCTGCGCCACGGTAACGTCATGCTCGACCCCGGCAAACGTATCGCCACGCTGGCTGGCGAACCCTTAACACTGAAACCAAAAGAATTTGCCCTGCTTGAATTACTGATGCTTAACGCTGGTCTGGTACTGTCGCGCAAACTGATTGAAGAGAAACTGTATACCTGGGACGAAGAGGTCAcc                                                                                                                                                                 <  1:198438/250‑1 (MQ=255)                                                                                                ntCGCCGCCAGGCTGGAAGCTCTGATGCGCCGAACCAACGGCCAGGCCAGCAACGAGCTGCGCCACGGTAACGTCATGCTCGACCCCGGCAAACGTATCGCCACGCTGGCTGGCGAACCCTTAACACTGAAACCAAAAGAATTTGCCCTGCTGGAATTACTGATGCGTAACGCTGGTCGGGTACTGTCGCGCAAACTGATTGAAGAGAAACTGTATACCTGGGACGAAGAGGGCACCAGTAATGCCGTTg                                                                                                                                                    >  1:55895/2‑250 (MQ=255)                                                                                                       ccAGGCTGGAAGCTCTGATGCGCCGAACCAACGGCCAGGCCAGCAACGAGCTGCGCCACGGTAACGTCATGCTCGACCCCGGCAAACGTATCGCCACGCTGGCTGGCGAACCCTTAACACTGAAACCAAAAGAATTTGCCCTGCTGGAATTACTGATGCGTAACGCTGGTCGGGTACTGTCGCGCAAACTGATTGAAGAGAAACTGTATACCTGGGACGAAGAGGTCAc                                                                                                                                                                  >  1:6997/1‑229 (MQ=255)                                                                                                                                    aaCGGCCAGGCCAGCAACGAGCTGCGCCACGGTAACGTCATGCTCGACCCCGGCAAACGTATCGCCACGCTGGCTGGCGAACCCTTAACACTGAAACCAAAAGAATTTGCCCTGCTGGAATTACTGATGCGTAACGCTGGTCTGGTACTGTcg                                                                                                                                                                                                                 <  1:74757/153‑1 (MQ=255)                                                                                                                                                  cAACGAGCTGCGCCACGGTAACGTCATGCTCGACCCCGGCAAACGTATCGACACGCTGGCTGGCGAACCCTTAACACTGAACCCAACAGAATTTGCCCTGCTGGAATTACTGATGCGTAACGCTGGTCGGGTACTGTCGCGCAAACTGATTGAAGAGAAACTGTATACCTGGGACGAAGAGGTCAc                                                                                                                                                                  >  1:240314/1‑186 (MQ=255)                                                                                                                                                      gAGCTGCGCCACGGTAACGTCATGCTAGACCCCGGCACACGTATCGCCACGCTGCCTGGCGAACCATTAACACTGAAACCAAAAGAATTTGCCCTGCTGGAATTAATGATGCGTAACGCTGGTCGGGTACTGTCGCGCAAACTGATTGAAGAGAAACTGTCTACCTGGGACGAAGAGGTCACAAGTAATGCCGTTGAAgtgcatgtgcat                                                                                                                                      >  1:122441/1‑210 (MQ=255)                                                                                                                                                           gcgcCACGGTAACGTCATGCTCGACCCCGGCAAACGTATCGCCACGCTGGCTGGCGAACCCTTAACACTGAAACCAAAAGAATTTGccc                                                                                                                                                                                                                                                          >  1:230063/1‑89 (MQ=255)                                                                                                                                                           gcgcCACGGTAACGTCATGCTCGACCCCGGCAAACGTATCGCCACGCTGGCTGGCGAACCCTTAACACTGAAACCAAAAGAATTTGCCCTGCTGGAATTACTGATGCGTAACGCTGGTCGGGTACTGTCGCGCAAACTGATTGAAGAGAAACTGTATACCTGGGACGAAGAGGTCACCAGTAATGCCGTTGAAGTGCATGTGCATCATCTGCGACGCAAACTCGGTAGTGATTTTATTCGTACCGTGCa                                                                                          <  1:242263/249‑1 (MQ=255)                                                                                                                                                                 cGGTAACGTCATGCTCGACCCCGGCAAACGTATCGCCACGCTGGCTGGCGAACCCTTAACACTGAAACCAAAAGAATTTGCCCTGCTGGAATTACTGATGCGTAACGCTGGTCGGGTACTGTCGCGCAAACTGATTGAAGAGAAACTGTATACCTGGGACGAAGAGGTCACCAGTAATGCCGTTGAAGTGCATGTGCATCATCTGCGACGCAAACTCGGTAGTGATTTTATTCGTACCGTGCATTGTATTg                                                                                  <  1:218506/251‑1 (MQ=255)                                                                                                                                                                        gTCATGCTCGACCCCGGCAAACGTATCGCCACGCTGGCTGGCGAACCCTTAACCCTGAAACCACAAGCATTTGCCCTGCTGGAATTACTGATGCGTAACGATGGTCGGGTACTGTCGCGCAAACTGATTGAAGAGAAACTGTATACCTGGGACGAAGAGGTCACCAGTAATGCCGTTGAAGTGCATGTGCATCATCTGCGACGCAAACTCGGTAGTGATTTTATTCGTACCGTGCATGGTATTGGTTacac                                                                           >  1:272810/1‑251 (MQ=255)                                                                                                                                                                              cTCGACCCCGGCAAACGTATCGCCACGCTGGCTGGCGACCCCTTAACACTGAAACCAAAAGAATTTGCCCTGCTGGAATTACTGATGCGTAACGCTGGTCGGGTACTGTCGCGCAAACTGCTTGAAGCGACACTGAATACCTGGGACGAAGAGGTCACCAGTAATGCCGTTGAAGTGCATGTGCATCATCTGCGACGCAAACTCGGTAGTGATTTTATTCGTACCGTGCATGGTATTGGTTACACATTAgg                                                                     >  1:247577/1‑251 (MQ=255)                                                                                                                                                                                    nccGGCAAACGTATCGCCACGCTGGCTGGCGAACCCTTAACACTGAAACCAAAAGAATTTGCCCTGCTGGAATTACTGATGCGTAACGCTGGTCGGGTACTGTCGCGCAAACTGATTGCAGAGAAACTGTATACCTGGGACGAAGAGGTCAc                                                                                                                                                                  >  1:80371/2‑152 (MQ=255)                                                                                                                                                                                       ggCAAACGTATCGCCACGCTGGCTGGCGAACCCTTAACACTGAAACCAAAAGAATTTGCCCTGCTGGAATTACTGATGCGTAACGCTGGTCGGGTACTGTCGCGCAAACTGATTGAAGAGAAACTGTATACCTGGGACGAAGAGGCCACCAGTAATGCCGTTGAAGTGCATGTGCATCATCTGCGACGCAAACTCGGTAGTGATTTTATTCGTACCGTGCa                                                                                          >  1:58707/1‑221 (MQ=255)                                                                                                                                                                                           aaCGTATCGCCACGCTGGCTGGCGAANCCTTAANNCTNAAACCAAAAGAATTTGCacntcnnngnnntncctggnganntcttcgtccnaggtatacagtttctcttcaatcagtttgcgcgacagtacccgaacagcgttangcatcagtanntcccgc                                                                                                                                                   >  2:64914‑M1/1‑55 (MQ=255)                                                                                                                                                                                           aaCGTATCGCCACGCTGGCTGGCGAACCCTTAACACTGAAACCAAAAGAATTTGCacttcaacggcattactggtgacctcttcgtcccaggtatacagtttctcttcaatcagtttgcgcgacagtacccgaccagcgttacgcatcagtaattccagc                                                                                                                                                   <  1:64914‑M1/160‑106 (MQ=255)                                                                                                                                                                                              gTATCGCCACTCTGGCTGGCGAACCCTTAACACTGAAACCAAAAGAATTTGCCCTGCTGGAATTACTGATGCGTAACGCTGGTCGGTTACTGTCGCGCAAACTGATTGAAGAGAAACTGTATACCGTGGACGAAGAGGGCATGAGTAATGCCGTTGAATTGCTTGGGCAGGATCTGCGACGCAATCTCGGTAGTGATTTTATTCGTACCGTGCATGGTATTGTTTACACATTAGGTGAGAAATGAAATTTa                                                     <  1:132764/251‑1 (MQ=255)                                                                                                                                                                                                   gCCACGCTGGCTGGCGAACCCTTAACACTGAAACCAAAAGAATTTGCCCTGCTGGAATTACTGATGCGTAACGCTGGTCGGGTACTGTCGCGCAAACTGATTGAAGAGAAACTGTATACCTGGGACGAAGAGGTCACCAGTAATGCCGTTGAAGTGCATGTGCATCATCTGCGACGCAAACTCGGTAGTGATTTTATTCGTACCGTGCATGGTATTGGTTACACATTAGGTGAGAAATGAAATTTACCCa                                                 >  1:115699/1‑250 (MQ=255)                                                                                                                                                                                                   gCCACGCTGGCTGCCGAACCCTTACCACTGAAACCAAAAGAATTTGCCCTGCTGGAATTACTGATGCGTAACGCTGGTCGGGTACTGTCGCGCAAACTGATTGAAGAGAAACTGTATACCTGGGACGCAGAGGTCACCAGTACTGCCGTTGAAGTGCATGTGCATCATCTGCGACGCAAACTCGGTAGTGCTTTTATTCGTACCGTGCATGGTATTGGTTACACATTAGGTGAGAAATGAAATTTACCCa                                                 >  1:89628/1‑250 (MQ=255)                                                                                                                                                                                                                gcGAACCCTTAACACTGAAACCAAAAGAATTTGCCCTGCTGGAATTACTGATg                                                                                                                                                                                                                                         <  1:9933/53‑1 (MQ=255)                                                                                                                                                                                                                gcGAACCCTTAACACTGAAACCAAAAGAATTTGCCCTGCTGGAATTACTGATg                                                                                                                                                                                                                                         >  2:9933/1‑53 (MQ=255)                                                                                                                                                                                                                 cGAACCCTTAACACTGAAACCACAAGACTTTGCCCTGCTGGAATTACTGCTGCGTAACGCTGGTCGGGTACTGTCGCGCAAACTGATTGAAGAGAAACTGTATACCTAGGACGAAGAGGTCACCAGTAATGCCGTTGAAGTGCATCTGCATCATCTGCGCCGCAACCTCggcaga                                                                                                              >  1:238188/1‑171 (MQ=255)                                                                                                                                                                                                                              cTGAAACCAAAAGAATTTGCCCTGCTGGAATTACTGATGCGTAACGCTGGTCGGGAACTGTCGCGCAACCTGATTGAAGAGAAACTGTATACCTGGGACGAAGAGGTCACCAGTACTGACGTTGAAGTGCATGTGCCTCATCTGCGACGCCAACTCGGTAGTGATTTTATTCGTAc                                                                                                >  1:37311/1‑176 (MQ=255)                                                                                                                                                                                                                                gAAACCAAAAGAATTTGCCCTGCTGGAATTACTTATGCGTAACGCTGGTCGGGTACTGTCGCGCAAACTGATTGAAGAGAAACTGTATACCTGGGACGAAGAGGTCACCAGTAATGCCGTTGAAGTGCATGTGCATCATCTGCGACGCAAACTCGGTAGTGAGTTTATTCGTACCGTGCATGGTATTGGTTACACAGTAGGTGAGAAATGAAATTTACCCAACGTCTTAGTCTGCGCGTCAGGCTGACGc                    <  1:106447/250‑1 (MQ=255)                                                                                                                                                                                                                                  aaCCAAAAGAATTTGCCCTGCTGGAATTACTGATGCGTAACGCTGGTCGGGTACTGTCGCGCAAACTGATTGAAGAGAAACTGTATACCTGGGACGAAGAGGTCACCAGTAATGCCGTTGAAgtgcatgtg                                                                                                                                         <  1:212433/131‑1 (MQ=255)                                                                                                                                                                                                                                    ccAAAAGAATTTGCCCTGCTGGAATTACTGATGCGTAACGCTGGTCGGGTACTGTCGCGCAAACTGATTGAAGAGAAACTGTATACCTGGGACGAAGAGGTCACCAGTAATGCCGTTGAAGTGCATGTGCATCATCTGCGACGCAAACTCGGTAGTGATTTTATTCGTACCGTGCATTGTATTGGTTTCACATTAGGTGAGAAATGAAATTTACCCAACGTCTTAGTCTGCGCGTCAGGCTGACGCTAATc               <  1:201691/251‑1 (MQ=255)                                                                                                                                                                                                                                                 cccTGCTGGAATTACTGATGCGTAACGCTGGTCGGGTACTGTCGCGCAAACTGATTGAAGAGAAACTGTATACCTGGGACGAAGAGGTCACCAGTAATGCCGTTGAAGTGCATGTGCATCATCTGCGACGCAAACTCGGTAGTGATTTTATTCGTACCGTGCATGGTATTGGTTACACATTAGGTGAGAAATGAAATGTACCCAACGTCTTAGTCTGCGCGTCAGGCTGACGCTAATCTTTTTAATTCTgg  <  1:149675/251‑1 (MQ=255)                                                                                                                                                                                                                                                 |                                                                                                                                                                                                                                                           TGATCCTGACCGCGCGCGATGCGCTGGCGGAACGTGTAGAAGGGCTGCGTCTGGGAGCTGACGATTATCTGTGTAAACCTTTTGCGTTGATAGAAGTCGCCGCCAGGCTGGAAGCTCTGATGCGCCGAACCAACGGCCAGGCCAGCAACGAGCTGCGCCACGGTAACGTCATGCTCGACCCCGGCAAACGTATCGCCACGCTGGCTGGCGAACCCTTAACACTGAAACCAAAAGAATTTGCCCTGCTGGAATTACTGATGCGTAACGCTGGTCGGGTACTGTCGCGCAAACTGATTGAAGAGAAACTGTATACCTGGGACGAAGAGGTCACCAGTAATGCCGTTGAAGTGCATGTGCATCATCTGCGACGCAAACTCGGTAGTGATTTTATTCGTACCGTGCATGGTATTGGTTACACATTAGGTGAGAAATGAAATTTACCCAACGTCTTAGTCTGCGCGTCAGGCTGACGCTAATCTTTTTAATTCTGG  >  NC_000913/3170054‑3170544

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.