New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 3170294	30 (2.570)	3 (0.260)	3/298	0.9	9.0%	coding (467/660 nt)	qseB	DNA‑binding transcriptional activator QseB
	?	NC_000913	= 3170402	31 (2.710)					coding (575/660 nt)	qseB	DNA‑binding transcriptional activator QseB
Rejected: Frequency below/above cutoff threshold.

GAGCTGCGCCACGGTAACGTCATGCTCGACCCCGGCAAACGTATCGCCACGCTGGCTGGCGAACCCTTAACACTGAAACCAAAAGAATTTGCCCTGCTGGAATTACTGATGCGTAACGCTGGTCGGGTACTGTCGCGCAAACTGATTGAAGAGAAACTGTATACCTGGGACGAAGAGGTCACCAGTAATGCCGTTGAAGTGCATGTGCATCATCTGCGACGCAAACTCGGTAGTGATTTTATTCGTACCGTGCATGGTATTGGTTACACATTAGGTGAGAAATGAAATTTACCCAACGTCTTAGTCTGCGCGTCAGGCTGACGCTAATCTTTTTAATTCTGGCCTCGGTGACCTGGCTGCTTTCCAGCTTTGTCGCCTGGAAACAAACAACGGATAACGTCGATGAATTGTTCGACACCCAACTGATGCT  >  NC_000913/3170203‑3170632                                                                                                                                                                                                        |                                                                                                                                                                                                                                       gAGCTGCGCCACGGTAACGTCATGCTAGACCCCGGCACACGTATCGCCACGCTGCCTGGCGAACCATTAACACTGAAACCAAAAGAATTTGCCCTGCTGGAATTAATGATGCGTAACGCTGGTCGGGTACTGTCGCGCAAACTGATTGAAGAGAAACTGTCTACCTGGGACGAAGAGGTCACAAGTAATGCCGTTGAAgtgcatgtgcat                                                                                                                                                                                                                              >  1:122441/1‑210 (MQ=255)      gcgcCACGGTAACGTCATGCTCGACCCCGGCAAACGTATCGCCACGCTGGCTGGCGAACCCTTAACACTGAAACCAAAAGAATTTGCCCTGCTGGAATTACTGATGCGTAACGCTGGTCGGGTACTGTCGCGCAAACTGATTGAAGAGAAACTGTATACCTGGGACGAAGAGGTCACCAGTAATGCCGTTGAAGTGCATGTGCATCATCTGCGACGCAAACTCGGTAGTGATTTTATTCGTACCGTGCa                                                                                                                                                                                  <  1:242263/249‑1 (MQ=255)            cGGTAACGTCATGCTCGACCCCGGCAAACGTATCGCCACGCTGGCTGGCGAACCCTTAACACTGAAACCAAAAGAATTTGCCCTGCTGGAATTACTGATGCGTAACGCTGGTCGGGTACTGTCGCGCAAACTGATTGAAGAGAAACTGTATACCTGGGACGAAGAGGTCACCAGTAATGCCGTTGAAGTGCATGTGCATCATCTGCGACGCAAACTCGGTAGTGATTTTATTCGTACCGTGCATTGTATTg                                                                                                                                                                          <  1:218506/251‑1 (MQ=255)                   gTCATGCTCGACCCCGGCAAACGTATCGCCACGCTGGCTGGCGAACCCTTAACCCTGAAACCACAAGCATTTGCCCTGCTGGAATTACTGATGCGTAACGATGGTCGGGTACTGTCGCGCAAACTGATTGAAGAGAAACTGTATACCTGGGACGAAGAGGTCACCAGTAATGCCGTTGAAGTGCATGTGCATCATCTGCGACGCAAACTCGGTAGTGATTTTATTCGTACCGTGCATGGTATTGGTTacac                                                                                                                                                                   >  1:272810/1‑251 (MQ=255)                         cTCGACCCCGGCAAACGTATCGCCACGCTGGCTGGCGACCCCTTAACACTGAAACCAAAAGAATTTGCCCTGCTGGAATTACTGATGCGTAACGCTGGTCGGGTACTGTCGCGCAAACTGCTTGAAGCGACACTGAATACCTGGGACGAAGAGGTCACCAGTAATGCCGTTGAAGTGCATGTGCATCATCTGCGACGCAAACTCGGTAGTGATTTTATTCGTACCGTGCATGGTATTGGTTACACATTAgg                                                                                                                                                             >  1:247577/1‑251 (MQ=255)                                  ggCAAACGTATCGCCACGCTGGCTGGCGAACCCTTAACACTGAAACCAAAAGAATTTGCCCTGCTGGAATTACTGATGCGTAACGCTGGTCGGGTACTGTCGCGCAAACTGATTGAAGAGAAACTGTATACCTGGGACGAAGAGGCCACCAGTAATGCCGTTGAAGTGCATGTGCATCATCTGCGACGCAAACTCGGTAGTGATTTTATTCGTACCGTGCa                                                                                                                                                                                  >  1:58707/1‑221 (MQ=255)                                         gTATCGCCACTCTGGCTGGCGAACCCTTAACACTGAAACCAAAAGAATTTGCCCTGCTGGAATTACTGATGCGTAACGCTGGTCGGTTACTGTCGCGCAAACTGATTGAAGAGAAACTGTATACCGTGGACGAAGAGGGCATGAGTAATGCCGTTGAATTGCTTGGGCAGGATCTGCGACGCAATCTCGGTAGTGATTTTATTCGTACCGTGCATGGTATTGTTTACACATTAGGTGAGAAATGAAATTTa                                                                                                                                             <  1:132764/251‑1 (MQ=255)                                              gCCACGCTGGCTGGCGAACCCTTAACACTGAAACCAAAAGAATTTGCCCTGCTGGAATTACTGATGCGTAACGCTGGTCGGGTACTGTCGCGCAAACTGATTGAAGAGAAACTGTATACCTGGGACGAAGAGGTCACCAGTAATGCCGTTGAAGTGCATGTGCATCATCTGCGACGCAAACTCGGTAGTGATTTTATTCGTACCGTGCATGGTATTGGTTACACATTAGGTGAGAAATGAAATTTACCCa                                                                                                                                         >  1:115699/1‑250 (MQ=255)                                              gCCACGCTGGCTGCCGAACCCTTACCACTGAAACCAAAAGAATTTGCCCTGCTGGAATTACTGATGCGTAACGCTGGTCGGGTACTGTCGCGCAAACTGATTGAAGAGAAACTGTATACCTGGGACGCAGAGGTCACCAGTACTGCCGTTGAAGTGCATGTGCATCATCTGCGACGCAAACTCGGTAGTGCTTTTATTCGTACCGTGCATGGTATTGGTTACACATTAGGTGAGAAATGAAATTTACCCa                                                                                                                                         >  1:89628/1‑250 (MQ=255)                                                            cGAACCCTTAACACTGAAACCACAAGACTTTGCCCTGCTGGAATTACTGCTGCGTAACGCTGGTCGGGTACTGTCGCGCAAACTGATTGAAGAGAAACTGTATACCTAGGACGAAGAGGTCACCAGTAATGCCGTTGAAGTGCATCTGCATCATCTGCGCCGCAACCTCggcaga                                                                                                                                                                                                      >  1:238188/1‑171 (MQ=255)                                                                         cTGAAACCAAAAGAATTTGCCCTGCTGGAATTACTGATGCGTAACGCTGGTCGGGAACTGTCGCGCAACCTGATTGAAGAGAAACTGTATACCTGGGACGAAGAGGTCACCAGTACTGACGTTGAAGTGCATGTGCCTCATCTGCGACGCCAACTCGGTAGTGATTTTATTCGTAc                                                                                                                                                                                        >  1:37311/1‑176 (MQ=255)                                                                           gAAACCAAAAGAATTTGCCCTGCTGGAATTACTTATGCGTAACGCTGGTCGGGTACTGTCGCGCAAACTGATTGAAGAGAAACTGTATACCTGGGACGAAGAGGTCACCAGTAATGCCGTTGAAGTGCATGTGCATCATCTGCGACGCAAACTCGGTAGTGAGTTTATTCGTACCGTGCATGGTATTGGTTACACAGTAGGTGAGAAATGAAATTTACCCAACGTCTTAGTCTGCGCGTCAGGCTGACGc                                                                                                            <  1:106447/250‑1 (MQ=255)                                                                             aaCCAAAAGAATTTGCCCTGCTGGAATTACTGATGCGTAACGCTGGTCGGGTACTGTCGCGCAAACTGATTGAAGAGAAACTGTATACCTGGGACGAAGAGGTCACCAGTAATGCCGTTGAAgtgcatgtg                                                                                                                                                                                                                                 <  1:212433/131‑1 (MQ=255)                                                                               ccAAAAGAATTTGCCCTGCTGGAATTACTGATGCGTAACGCTGGTCGGGTACTGTCGCGCAAACTGATTGAAGAGAAACTGTATACCTGGGACGAAGAGGTCACCAGTAATGCCGTTGAAGTGCATGTGCATCATCTGCGACGCAAACTCGGTAGTGATTTTATTCGTACCGTGCATTGTATTGGTTTCACATTAGGTGAGAAATGAAATTTACCCAACGTCTTAGTCTGCGCGTCAGGCTGACGCTAATc                                                                                                       <  1:201691/251‑1 (MQ=255)                                                                                            cccTGCTGGAATTACTGATGCGTAACGCTGGTCGGGTACTGTCGCGCAAACTGATTGAAGAGAAACTGTATACCTGGGACGAAGAGGTCACCAGTAATGCCGTTGAAGTGCATGTGCATCATCTGCGACGCAAACTCGGTAGTGATTTTATTCGTACCGTGCATGGTATTGGTTACACATTAGGTGAGAAATGAAATGTACCCAACGTCTTAGTCTGCGCGTCAGGCTGACGCTAATCTTTTTAATTCTgg                                                                                          <  1:149675/251‑1 (MQ=255)                                                                                                gctgGAATTACTGATGCGTAACGCTGGTCGGGTACTGTCGCGCAAACTGATTGAAGAGAAACTGTATACCTGGGACGAAGAGGTCACCAGTAATGCCGTTGAAGTgcaaattcttttggtttcagtgttaagggttcgccagccagcgtggcgatacgtt                                                                                                                                                                                 <  1:64914‑M2/160‑56 (MQ=255)                                                                                                gcgggannTACTGATGCNTAACGCTGTTCGGGTACTGTCGCGCAAACTGATTGAAGAGAAACTGTATACCTNGGACGAAGANNTCNCCAGGNANNNCNNNGANGTgcaaattcttttggtttnagnnttaaggnttcgccagccagcgtggcgatacgtt                                                                                                                                                                                 >  2:64914‑M2/4‑105 (MQ=255)                                                                                                            gATGCGTAACGATGGTCGGGTACTGTCGCGAAAACTGATTGAAGAGAACCTGTATACCTGGGACGAAGCGGTCACCCGTAATGCCGTTGAAGTGCATGTGCATCATCTGCGACGCAAACTCGGTAGTGATTTTATTCGTACCGTGCATGGTATTgg                                                                                                                                                                         >  1:235314/1‑156 (MQ=255)                                                                                                             aTGCGTAACGCTGGTCGGGTACTGTCGCGCAAACTGATTGAAGAGAAACTGTATTCCTGGGACGAAGAGGTCACCAGTAATGCCGTTGAAGTGCATGTGCATCATCTGCGACGCAAACTCGGTAGTGATTTTATTCGTACCGTGCATGGTATTGGTTACACATTATGTGAGAAATGAAATTTACCCAACGTCGTAGTCTGCGCGTCAGGCTGACGCTAATCTTTTTAATTCTGGCCTCGGTGACCTGgctg                                                                         <  1:259995/251‑1 (MQ=255)                                                                                                                 gTAACGCTGGTCGGGTACTGTCGCGCAAACTGATTGAAGAGAAACTGTATACCTGGGACGAAGAGGTCACCAGTAATGCCGTTGAATTGCATGGGCATCATCTGCGACGCAAACGCGTTAGTTATTTGATGCGTACCGTGCATGGTAGTGGTTACACATTAGGTGAGAAATGAAATTTACCCAAc                                                                                                                                       <  1:249951/185‑1 (MQ=255)                                                                                                                            cGGGTACTGTCGCGCAAACTGATTGAAGAGAAACTGTATACCTGGGACGAAGAGGTCACCAGTAATGCCGTTGAAGTGCATGTGCATCATCTGCGACGCAAACTCGGTAGTGATTTTAGTCGTACCGTGCATGGTATTGGTTACACATTAGGTGAGAAATGAAATTTACCCAACGTCTTATGCTGCGCGTCAGGCTGACGCTAATCTTTTTAATTCTGGCCTCGGTGACCTGGCTGCTTTCCAGCTTTGTc                                                          <  1:264472/251‑1 (MQ=255)                                                                                                                               gTACTGTCGCGCAAACTGATTGAAGAGAAACTGTATACCTGGGACGAAGAGGTCACCAGTAATGCCGTTGAAGTGCATGTGCATCATCTGCGACGCAAACTCGGTAGTGATTTTATTCGTACCGTGCATgn                                                                                                                                                                               <  1:169812/131‑2 (MQ=255)                                                                                                                               gTACTGTCGCGCAAACTGATTGAAGAGAAACTGTATACCTGGGACGAAGAGGTCACCAGTAATGCCGTTGAAGTGCATGTGCATCATCTGCGACGCAAACTCGGTAGTGATTTTATTCGTACCGTGCATgg                                                                                                                                                                               >  2:169812/1‑131 (MQ=255)                                                                                                                                  ntGTCGCGCAAACTGATTGAAGAGAAACTGTATACCTGGGACGAAGAGGTCACCAGTAATGCCGTTGAAGTGCATGTGCATCATCTGCGACGCAAACTCGGTAGTGATTTTATTCGTACCGTGCATGGTATTGGTTACACATTAGGTGAGAAATGAAATTTACCCAACGTCTTAGTCTGCGCGTCAGGCTGAc                                                                                                              >  1:174519/2‑193 (MQ=255)                                                                                                                                                         gaAACTGTATACCTGGGACGAAGAGGTCACCAGTAATGCCGTTGAAGTGCATGTGCATCATCTGCGACGCAAACTCGGTAGTGATTTTATTCGTACCGTGCATGGTATTGGTTACACATTAGGTGAGAAATGAAATTTACCCAACGTCTGAGTCTGCGCGTCAGGCTGACGCTAATCTTTTTAATTCTGGCCTCGGTGACCTGGCTGCTTTCCAGCTTTGTCGCCTGGAAACAAACAACGGATAACGTc                               <  1:76596/249‑1 (MQ=255)                                                                                                                                                           naCTGTATACCTGGGACGAAGAGGTCACCAGTAATGCCGTTGAAGTGCATGTGCATCATCTGCGACGCAAACTCGGTAGTGATTTTATTCGTACCGTGCATGGTATTGGTTACACATTAGGTGAGAAATGAAATTTACCCAACGTCTTAGTCTGCGCGTCAGGCTGACGCTAATCTTTTTAATTCTGGCCTCGGTGACCTGGCTGCTTTCCAGCTTTGTCGCCTGGaaacaaac                                            >  1:67164/2‑234 (MQ=255)                                                                                                                                                                        ggACGAAGAGGTCACCAGTAATGCCGTTGAAgtgcatgtn                                                                                                                                                                                                                                 <  1:171109/40‑1 (MQ=255)                                                                                                                                                                        ggACGAAGAGGTCACCAGTAATGCCGTTGAAGTGCATGTGCATCATCTGCGACGCAAACTCGGTAGTGATTGTATTCGTACCGTGCATGGTATTGGTTACACATTAGGTGAGAAATGAAATTTACCCAAAGTCTTAGGCGGCCCGTCAGGCGGACTCTAATCTTTTTAATTCTGGCCGCGGTGACCTGGCTGCGTTCCAGCTTTGTCGCCTGGAAACAAACAACGGATAACTTCTATGAATTGTTCGacac              <  1:277514/251‑1 (MQ=255)                                                                                                                                                                        ggACGAAGAGGTCACCAGTAAGGCCGTTGAAgtgcatgtg                                                                                                                                                                                                                                 >  2:171109/1‑40 (MQ=39)                                                                                                                                                                         gaagAAGAGGTCACCAGTAATGCCGTTGAAGTGCATGTGCATCATCTGCGACGCAAACTCGGTAGTGATTTTATTCGTACCGTGCATGGTATTGGTTACACATTAGGTGAGAAATGAAATTTACCCACCGTCTNAGTNNNnncg                                                                                                                        >  2:173247/4‑144 (MQ=255)                                                                                                                                                                                 ggTCACCAGTAATGCCGTTGAAGTGCATGTGCATCATCTGCGACGCAAACTCGGTAGTGATTTTATTCg                                                                                                                                                                                           >  1:37513/1‑69 (MQ=255)                                                                                                                                                                                  gTCACCAGTAATGCCGTTGAAGTGCATGTGCATCATCTGCGACGCAAACTCGGTAGTGATTTTATTCGTACCGTGCATGGTATTGGTTACACATTAGGTGAGAAATGAAATTTACCCAACGTCTTAGTCTGCGCGTCAGGCTGACGCTAATCTTTTTAATTCTGGCCTCGGTGACCTGGCTGCTTTCCAGCTTTGTCGCCTGGAAACAAACAACGGATAACGTCg                              >  1:208315/1‑225 (MQ=255)                                                                                                                                                                                    cACCAGTAATGCCGTTGAAGTGCATGTGCATCATCTGCGACGCAAACTCGGAAGTGATTTCATTCGTCCCGTGCATGGTATTGGTTACACATTAGGTTAGAAATGAAATTTACCCACCGCCTTAGTCTGCGCGGCAGGCTGACGCTAATGTTTTTAATTCTGGCCTCGGTGACCTGGCTGCTTTCCAGCTTTGTCGCCTGGAAACAAACAACGGATAACGTCGATGAATTGTTCGACACCCAACTGATGCt  >  1:160937/1‑251 (MQ=255)                                                                                                                                                                                                       gTgcaaattcttttggtttcagtgttaagggttcgccagccagcgtggcgatacgtttgccggggtcgagcatgacgttaccgtggcgcagctcgttgctggcctggccgttggttcggcgcatcagagcttccagcctggcggcgacttctatcaacgca                                                                         <  1:256682‑M2/161‑160 (MQ=255)                                                                                                                                                                                                        |                                                                                                                                                                                                                                       GAGCTGCGCCACGGTAACGTCATGCTCGACCCCGGCAAACGTATCGCCACGCTGGCTGGCGAACCCTTAACACTGAAACCAAAAGAATTTGCCCTGCTGGAATTACTGATGCGTAACGCTGGTCGGGTACTGTCGCGCAAACTGATTGAAGAGAAACTGTATACCTGGGACGAAGAGGTCACCAGTAATGCCGTTGAAGTGCATGTGCATCATCTGCGACGCAAACTCGGTAGTGATTTTATTCGTACCGTGCATGGTATTGGTTACACATTAGGTGAGAAATGAAATTTACCCAACGTCTTAGTCTGCGCGTCAGGCTGACGCTAATCTTTTTAATTCTGGCCTCGGTGACCTGGCTGCTTTCCAGCTTTGTCGCCTGGAAACAAACAACGGATAACGTCGATGAATTGTTCGACACCCAACTGATGCT  >  NC_000913/3170203‑3170632

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.