| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 579,717 | 0 | A | C | 54.5% | ‑1.9 / 22.1 | 22 | intergenic (‑123/‑163) | ybcV/ybcW | DUF1398 domain‑containing protein YbcV/uncharacterized protein YbcW |
| Reads supporting (aligned to +/- strand): ref base A (4/6); new base C (4/8); total (8/14) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.82e-02 | |||||||||||
| Rejected as consensus: E-value score below prediction cutoff. | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
TCAGAATAAAACAATTCACAGTTTAAATCTTTTCGCACTTGATCGAATATTTCTTTAAAAATGGCAACCTGAGCCATTGGTAAAACCTTCCATGTGATACGAGGGCGCGTAGT‑TTGCATTATCGTTTTTATCGCTTCAATCTGGTCTGACCTCTTTGTGTTTTGTTGATGATTTATGTCAAATATTAGGAATGTTTTCAATTAATAGTATTGGTTGCGTAACAAAGTGCGGTCCTGCTGGCATTCTGGAGGGAAATACAACCGACAGATGTATGTAAGGCCAACGTGCTCAAACCTTCATACAGAAAGATTTGAAGTAATATTTTAACCGCTAGATGAAGAGCAAGCGCATGGAGCGACAAAATGAATAAAGAACAATCTGCTGATGATCCCTCCGTGGATCTGATTCGTGTAAAAAATATGCTTAATAGCACCATTTCTATGA > NC_000913/579518‑579961 | tCAGAATAAAACAATTCACAGTTTAAATCTTTTCGCACTTGATCGAATATTTCTTTAAAAATGGCAACCTGAGCCATTGGTAAAACCTTCCATGTGATACGAGGGCGTGTAGT‑TTGCATTATCGTTTTTATCGCTTCAATCTGGTCTGACCTCTTTGTGTTTTGTTGATGATTTATGTCAAATATTAGGAATGTTTTCAATTAATAGTATTGGTTGCGTAACAAAGTGCGGTCCTGCTGGCATTCTGGAg < 1:5756/250‑1 (MQ=255) gagctcttccgtgctctaaTATTTCTTTAAAAATGGCAACCTGAGTCATTGGTAAAACCTTCCATTTGATACGAGGGCGGGTAGTGTTG‑ATTAGGGTTTTTATCGTTTCAATCTGGTCTGAGCTCATTGCGTTTTGTTGATGATTTATTTTAAATAGTAGTAATGTTTTGACTGATTATTATTGGTTGCGAAGCAATGTGCGGTCCTGCGGGTATTCTGGAGGGAAATACAACCGACAGATGTATGTAAg < 1:99245/233‑1 (MQ=255) tttCGCACTTGTTCGAATATTTCTTTAAAAATGGCAACCTGAGCCATTGGTAAAACCTTCCATGTGATACGAGGGCGCGTAGT‑TTGCATTATCGTTTTTATCGCTTCAATCTGGTCTGACCTCTTTGTGTTTTGTTGATGATTTATGTCAAATATTAGGAATGTTTTCAATTAATAGTATTGGTTGCGTAACAAAGTGCGGTCCTGCTGGCATTTTGGAGGGAAATACAACCGACAGATGTATGTAAgg < 1:182404/249‑1 (MQ=255) tttCGCACTTGATCGACTATTTCTTTAAAAATGGCAAACTGAGCCATTGGTAAACCAGTCCATGTGATACGAGGGCGCGTCGT‑TTGAATTATAGTTTTTATCGTTTCAATCTGGTCTGACCTCCTTGTGTTTTGATGATGATTTATGTCAAATATTCGGAATGTTTTCACTTAATAGTATTGGTTGCGTAACAAAGTGCGGTCCTGCTGGCATTCTGGAGGGAAAAACAAACGACAGATGTATGTAAGGcc > 1:110522/1‑251 (MQ=255) tttCGCACTTGATCGAATATTTCTTTAAAAATGGCAACCTGAGCCATTGGTAAAACCTTCCATGTGATACGAGGGCGCGTAGT‑TTGCATTATCGTTTTTATCGCTTCAATCTGGTCTGACCTCTTTGTGTTTTGTTGATGATTTATGTCAAATATTAGGAATGTTTTCAATTAATAGTATTGGTTGCGTAACAAAGTGCGGTCCTGCTGGCATTCTGGAGGGAAATACAACCGACAGATGTATGTAAGGc < 1:16566/250‑1 (MQ=255) gCACTTGATCGAATATTTCTTTAAAAATGGCAACCTGAGCCATTGGTAAAACCTTCCATGTGCTACGAGGGCGCGTAGT‑TTGCATTATCGTTTTTATCGCTTCAATCTGGTCTGACCTCTTTGTGTTTTGTTGATGATTTATGTCAAATATTAGGAATGTTTTCAATTAATAGTATTGGTTGCGTAACAAAGTGCGGTCCTGCTGGCATTCTGGAGGGAAATACAACCGACAGATGTATGTAAGGCCAACg > 1:94319/1‑251 (MQ=255) nttGATCGAATATTTCTTTAAAAATGGCAACCTGAGCCATTGGTAAAACCTTCCATGTGATACGAGGGCGCGTAGT‑TTGCATTATCGTTTTTATCGCTTCAATCTGGTCTGACCTCTTTGTGTTTTGTTGATGATTTATGTCAAATATTAGGAATGTTTTCAATTAATAGTATTGGTTGCGTAACAAAGTGCGGTCCTGCTGGCATTCTGGAGGGAAATAAAACCGACAGATGTATGTAAGGCCAACg > 1:128944/2‑248 (MQ=255) gAATATTTCTTTAAAAATGGCAACCTGAGCCATTGGTAAAACCTTCCATGTGATACGAGGGCGCGTAGT‑TTGCATTATCGTTTTTATCGCTTCAATCTGGTCTGACCTCTTTGTGTTTTGTTGATGATTTATGTCAAATATTAGGAATGTTTTCAATTAATAGTATTGGTTGCGTAACAAAGTGCGGTCCTGCTGGCATTCTGGAGGGAAATACAACCGACAGATGTATGTAAGGCCAACGTGCTCAAAcc < 1:77949/251‑1 (MQ=255) cTTTAAAAATGGCAACCTGAGCCATTGGTAAAACCTTCCATGTGATACGAGGGCGCGTAGT‑TTGCATTATCGTTTATATCGTTTCAATCTGGTCTGACCTCCTTGAGTTTTGTTGATGATTTATGTCAAATATTAGGAATGTTTTCACTTAATAGTATTGGTTGCGTAACAAAGTGCGGGCCTGCTGGCATTCTGGAGGGAAATGCAACCGACAGATGTATGTAAGGCCAACGTGCTCaaatc < 1:88180/243‑3 (MQ=255) gCAACCTGAGCCATTGGTAAAACCTTCCATGTGATACGAGGTCGCGTACT‑TTGAATCCTCGTTTTTATCCTTTCAATCTGGTCCGCCATCCTTGTGCTTTGTTGCTGATTTATGTCAACTATTAGGAATGTTTTCACTTCATAGTATTGGTTGCGTAACAAAGTGCGGTCCTGCTGGCATTCTGGGGGGAAATACAACCGACAGTTGAATGTAAGGCCAACGTGCTCAAATCTTCATACAGAAAGATTTg > 1:146721/1‑250 (MQ=255) gCCATTGGTAAAACCTTCCATGTGATACGAGGGCGCGTAGT‑TTGCATTATCGTTTTTATCGTTTCAATCTGGTCTGACCTCCTTGTGTTTTGTTGATGATTTATGTCAAATATTAGGAATGTTTTCACTTAATAGTATTGGTTGCGTAACAAAGTGCGGTCCTGCTGGCATTCTGGAGGGAAATACAACCg > 1:80285/1‑191 (MQ=255) gTAAAACCTTCCATGTGATACGAGGGCGCGTAGT‑TTGCATTATCGTTTTTATCGTTTCAATCTGGGCTTACCTCCGTGTTTGTTGTTGAGGACTTATGTCAAATATTAGGAATGTTTTCACTTAATAGTATTGGTTGCGTAACAAAGTGCGGTCCTGCTGGCATTc < 1:198089/166‑1 (MQ=255) cATGTGATACGAGGGCGCGTAGT‑TTGCATTATCGTTTTTATCGCTTCAATCTGGTCTGAGTTCTTTGTGTTTTGTTGATGATTTATGTCAAATATTAGGAATGTTTTCAATTAATAGTATTGGTTGCGTAACAAAGTGCGGTCCTGCTGGCATTCTGGAGGGAAATACAACCGACAGATGTATGTAAGGCCAACGTGCTCAAACCTTCATACAGAAAGATTTGAAGTAATATTTTAACCGCTAGATGa > 1:145795/1‑248 (MQ=255) naTACGAGGGCGCGTAGT‑TTGCATTATCGTTTTTATCGCTTCAATCTGGTCTGACCTCTTTGTGTTTTGTTGATGATTTATGTCAAATATTAGGCATGTTTTCAATTAATAGTATTGGTTGCGTAACAAAGTGCGGTCCTGCTGGCATTCTGGAGGGAAATACAACCGACAGATGTATGTAAGGCCAACGTGCTCAAACCTTCATACAGAAAGATTTGAAGTAATATTTTAACCGCTAGATGAAGAGCa > 1:43864/2‑249 (MQ=255) cgTAGT‑TTGCATTATCGTTTTTATCGTTTCAATCTGGTCTGACCTCCTTGTGTTTTGTTGATGATTTATGTCAAATATTAGGAATGTTTTCACTTAATAGTATTGGTTGCGTAACAAAGTGCGGTCCTGCTGGCATTCTGTAGGGAAATACAACCGACAGATGTATGTAAGNc < 1:169281/173‑1 (MQ=255) gT‑TTTCATTATCGTTTTTATCGTTTCAATCTGGTCTGACCTCCTTGTGTTTTGTTGATGATTTATGTCAAATATTAGGAATGTTTTCACTTAATAGTATTGGTTGCGTAACAAAGTGCGGTCCTGCTGGCATTCTGGAGGGAAATACAACCGACAGATGTATGTAAGGCCAACGTGCTCAAATCTTCAGACAGAAAGATTTGAAGTAATATTTTAACCGCTAGATGAAGAGCAAGCGCATGGAGCGAc < 1:76160/248‑1 (MQ=255) attgtttCAATCTGTTCTGACCTCCTTGTGTTTTGTTGATGATTTATGTCAAATATTAGGAATGTTTTCACTTAATAGTATTGGTTGCGTAACAAAGTGCGGTCCTGGTTGCATGCTGGAGGGAAATACAACCGACAGATGTATGTAAGGACAACGTGCTCAAATCTTCATACAGAAAGATTTGAAGTAATATTTTATCCGCTAGATGAATAGCAAGCGCATTGAGCGACAAAAAGAATAAAGAACAATc < 1:37831/245‑1 (MQ=255) nnnnnnnnnntGNNNNNACCNCTTTGTGTTTTGTTGATGATTTATGTCAAATATTAGGAATGTTTTCAATTAATAGTATTGGTTGCGTAACAAAGTGCGGTCCTGCTGGCATTCTGGAGGGAAATACAACCGACAGATGTATGTACGGCCAAcc < 2:128944/144‑2 (MQ=255) aTCTGGTCTGGCCTCTTTGTGTTTTGTTGATGATTTATGTCAAATATTAGGAATGTTTTCAATTAATAGt < 1:182168/70‑1 (MQ=255) gatgatTTATGTCACATATTAGGAATGTTTTCACTTAATAGTATTGGTTGCGTAACACAGTGCGGTCCTGCTGGCATTCTGGAGGGAACTACAACCGACAGATGTATGTAAGGCCAGCGTGCTCAAATCTTCATACAGACAGATTTGATGTAATATTTTATCCGCTAGCTGAAGAGCAAGCGCATGGAGCGACAAACTGAATAACGAACAATCTGCTGATGATCCCTCCGTGGATCTGCTTCGTGTaaaa > 1:213984/1‑250 (MQ=255) tATGTCAAATATTAGGAATGTTTTCACTTAATAGTATTGGTTGCGTAACAAAGTGCGGTCCTGCTGGCATTCTGGAGGGAAATACAACCGACAGATGTATGTAAGGCCAACGTGCTCAAATCTTCATACAGAAAGATTTGAAGTAATATTTTAACCGCTAGATGAAGAGCAAGCGCATGGAGCGACAAAATGAATAAAGAACAATCTGCTGATGATCCCTCCGTGGATCTGATTCGTGTAAAAAATATgn < 1:127162/250‑2 (MQ=255) tttCACTTAATAGTATTGGTTGCGTAACAAAGTGCGGTCCTGCTGGCATTCTGGAGGGAAATACAACCGACAGATGTATGTAAGGCCAACGTGCTCAAATCTTCATACAGAAAGATTTGAAGGAATATTTTAACCGCGAGATGAAGAGCAAGCGCATGGAGTGACAAAATGAATAAAGAACAATCTGCTGATGATCCCTCCGTGGATCTGATTCGTGTAAAAAAGATGCTTAAGAGTTCCATTTCTATGa < 1:64708/250‑1 (MQ=255) | TCAGAATAAAACAATTCACAGTTTAAATCTTTTCGCACTTGATCGAATATTTCTTTAAAAATGGCAACCTGAGCCATTGGTAAAACCTTCCATGTGATACGAGGGCGCGTAGT‑TTGCATTATCGTTTTTATCGCTTCAATCTGGTCTGACCTCTTTGTGTTTTGTTGATGATTTATGTCAAATATTAGGAATGTTTTCAATTAATAGTATTGGTTGCGTAACAAAGTGCGGTCCTGCTGGCATTCTGGAGGGAAATACAACCGACAGATGTATGTAAGGCCAACGTGCTCAAACCTTCATACAGAAAGATTTGAAGTAATATTTTAACCGCTAGATGAAGAGCAAGCGCATGGAGCGACAAAATGAATAAAGAACAATCTGCTGATGATCCCTCCGTGGATCTGATTCGTGTAAAAAATATGCTTAATAGCACCATTTCTATGA > NC_000913/579518‑579961 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |