mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.39.0
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 102 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,182,809 | 0 | G | A | 75.6% | 135.8 / 47.8 | 79 | H7H (CAC→CAT) | potD | spermidine preferential ABC transporter periplasmic binding protein |
| * | NC_000913 | 3,024,949 | 0 | G | A | 71.9% | 249.8 / 100.0 | 148 | G200D (GGC→GAC) | xanQ | xanthine:H(+) symporter XanQ |
| * | NC_000913 | 3,001,304 | 1 | . | G | 67.7% | 208.5 / 120.9 | 99 | coding (960/2259 nt) | xdhA | putative xanthine dehydrogenase molybdenum‑binding subunit XdhA |
| * | NC_000913 | 3,947,928 | 0 | G | A | 57.1% | 68.1 / 118.0 | 108 | R14* (CGA→TGA) | hdfR | DNA‑binding transcriptional dual regulator HdfR |
| * | NC_000913 | 3,001,304 | 2 | . | G | 42.4% | 39.3 / 189.9 | 99 | coding (960/2259 nt) | xdhA | putative xanthine dehydrogenase molybdenum‑binding subunit XdhA |
| * | NC_000913 | 288,382 | 0 | A | C | 36.0% | 101.6 / 25.5 | 87 | T532P (ACC→CCC) | yagH | putative xylosidase/arabinosidase |
| * | NC_000913 | 2,483,254 | 0 | G | A | 35.6% | 67.9 / 18.3 | 45 | S29L (TCA→TTA) | emrK | tripartite efflux pump membrane fusion protein EmrK |
| * | NC_000913 | 107,553 | 0 | T | . | 35.4% | 211.7 / 111.4 | 82 | intergenic (+79/‑152) | lpxC/secM | UDP‑3‑O‑acyl‑N‑acetylglucosamine deacetylase/SecA translation regulator |
| * | NC_000913 | 433,649 | 0 | T | G | 35.1% | 119.1 / 20.8 | 140 | G65G (GGT→GGG) | ribD | fused diaminohydroxyphosphoribosylaminopyrimidine deaminase/5‑amino‑6‑(5‑phosphoribosylamino)uracil reductase |
| * | NC_000913 | 2,909,541 | 0 | A | T | 34.9% | 79.5 / 83.3 | 89 | D42E (GAT→GAA) | pyrG | CTP synthetase |
| * | NC_000913 | 2,869,124 | 0 | T | C | 34.6% | 136.8 / 139.6 | 137 | G132G (GGA→GGG) | pcm | protein‑L‑isoaspartate O‑methyltransferase |
| * | NC_000913 | 766,716 | 0 | G | T | 33.3% | 35.1 / 15.1 | 40 | A245S (GCG→TCG) | mngA | 2‑O‑alpha‑mannosyl‑D‑glycerate specific PTS enzyme II |
| * | NC_000913 | 3,497,688 | 0 | T | G | 31.7% | 202.7 / 16.1 | 122 | V229G (GTG→GGG) | nirC | nitrite transporter NirC |
| * | NC_000913 | 2,483,268 | 0 | T | A | 31.2% | 83.4 / 18.6 | 48 | L24F (TTA→TTT) | emrK | tripartite efflux pump membrane fusion protein EmrK |
| * | NC_000913 | 1,261,842 | 0 | T | G | 30.8% | 164.5 / 11.7 | 94 | T12P (ACC→CCC) | prs | ribose‑phosphate diphosphokinase |
| * | NC_000913 | 3,844,219 | 0 | T | G | 30.1% | 199.6 / 18.0 | 114 | F86V (TTT→GTT) | adeD | adenine deaminase |
| * | NC_000913 | 4,429,984 | 0 | T | G | 29.8% | 179.3 / 19.3 | 94 | L41V (TTG→GTG) | cycA | D‑serine/alanine/glycine/:H(+)symporter |
| * | NC_000913 | 3,003,921 | 0 | T | G | 29.5% | 183.0 / 11.6 | 88 | Y145D (TAT→GAT) | xdhC | putative xanthine dehydrogenase iron‑sulfur‑binding subunit XdhC |
| * | NC_000913 | 3,158,893 | 0 | T | C | 28.9% | 197.9 / 15.2 | 91 | intergenic (+9/+34) | yqhH/ygiQ | lipoprotein YqhH/radical SAM superfamily protein YgiQ |
| * | NC_000913 | 3,531,440 | 0 | A | C | 28.2% | 303.0 / 18.7 | 149 | Y334D (TAT→GAT) | yhgE | putative transport protein YhgE |