| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,182,809 | 0 | G | A | 75.6% | 135.8 / 47.8 | 79 | H7H (CAC→CAT) | potD | spermidine preferential ABC transporter periplasmic binding protein |
| Reads supporting (aligned to +/- strand): ref base G (12/7); new base A (35/24); total (48/31) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.72e-01 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
TTTATCAACGTAATAGGTTGAAGGAACCACCAGATCATAGGCACCGTCTTTGTATGTTTTCAGCTTGGCGTACATGGTTTCGTTCGACTCGTAAGTCGAATAGATAACCTTAATACCGGTTTCTTTGGTGAAC‑TGTTCAAGCAGTCC‑TGGCGGCACGTACTCGGTCCAGTTG‑TAGAAATACAGCGTGTTGTTGTCATCGGCGTGAGCGG‑CGCTCATGCCCAGTGCCAGAGCACCCGCCGCGAGCAGGTGGCGTGACCATTTTTTCATTTAACGTCCCCTGTGTTACCTTTCGTTTTATCACGAGCAATAAG‑CTGGCTGGCAATAACCATCACCAGCGACAGCACCAGTAATATGGTTGCCAGCGCGTTAACTTCCGGCGATACGCCGACTTTGACCATCGAATAAATTTTTAACGGCAGAATTTCATAACTTGGTCCGGTGACGAACGAAGAAACTACCACATCGTCCATCGACAGGGTAAAGCTTAACA > NC_000913/1182563‑1183052 | tttATCAACGTAATAGGTTGAAGGAACCACCAGATCATAGGCACCGTCTTTGTATGTTTTCAGCTTGGCGTACATGGTTTCGTTCGACTCGTAAGTCGAATAGATAACCTTAATACCGGTTTCTTTGGTGAAC‑TGTTCAAGCAGTCC‑TGGCGGCACGTACTCGGTCCAGTTG‑TAGAAATACAGCGTGTTGTTGTCATCGGCGTGAGCGG‑CGCTCATGCCCAGTGCCAGAGCACCCGCCGCGAGCAGATggg > 1:317163/1‑250 (MQ=255) aTCAACGTAATCGGTTGAAGGAACCACCAGATCATAGGCACCGTCTTTGTATGTTTTCAGCTTGGCGTACATGGTTTCGTTCGACTCGTAAGTCGAATAGATAACCTTAATACCGGTTTCTTTGGTGAAC‑TGTTCAAGCAGTCC‑TGGCGGCACGTACTCGGTCCAGTTG‑TAGACATACAGCGTGTTGTTGTCATCGGCGTGAGCGG‑CGCTCATGCCCAGTGCCAGAGCACCCGCCGCCAGCAGATGGCggg > 2:411935/1‑249 (MQ=255) aTCAACGTAATAGGTTGAAGGACCCCCCAGATCATAGGCCCCTTTTTTGTATTTTTTCAGCTGGGCGTACATGGTTTCGTTCGACTCTTAATTCAAATAGATAACCTTAATACCGGTTTCTTTGGTGAAC‑TGTTCAAGCAGTCC‑TGGCGGCATGTACTCGGTCCAGTTG‑TAGAAATACAGCGTTTTTTTGTCATCGGCGTGAGCGG‑CGCTAATGCCCAGTGCCAAAGCACCCGCCGCGAGCAGGTGGCGTg < 1:818982/251‑1 (MQ=255) aCGTAATAGGTTGAAGGACCCACCAGATCATAGGCACCGTCTTTGTATGTTTTCAGCTTGGCGTACATGGTTTCGTTCGACTCGTAAGTCGAATAGATAACCTTAATACCGGTTTCTTTGGTGAAC‑TGTTCAAGCAGTCC‑TGGCGGCACGTACTCGGTCCAGTTG‑TAGAAATACAGCGTGTTGTTGTCATCGGCGTGAGCGG‑CGCTAATGCCCAGTGCCAGAGCCCCCGCCGCGAGCAGATGGCGTg < 1:662465/247‑1 (MQ=255) aCGTAATAGGTTGAAGGAACCACCAGATCATAGGCACCGTCTTTGTATGTTTTCAGCTTGGCGTACATGGTTTCGTTCGACTCGTAAGTCGAATAGATAACCTTAATACCGGTTTCTTTGGTGAAC‑TGTTCAAGCAGTCC‑TGGCGGCACGTACTCGGTCCAGTTG‑TAGAAATACAGCGTGTTGTTGTCATCGGCGTGAGCGG‑CGCTCCTGCCCAGTGCCAGAGCACCCGCCGCGAGCAGCTGGCGTGaggg > 2:662465/1‑248 (MQ=255) aaTAGGTTGAAGGAACCACCAGATCATAGGCACCGTCTTTGTATGTTTTCAGCTTGGCGTACATGGTTTCGTTCGACTCGTAAGTCGAATAGATAACCTTAATACCGGTTTCTTTGGTGAAC‑TGTTCAAGCAGTCC‑TGGCGGCACGTACTCGGTCCAGTTG‑TAGAAATACAGCGTGTTGTTGTCATCGGCGTGAGCGG‑CGCTCATGCCCAGTGCCAGAGCACCCGCCGCGAGCAGATGGCGTGACCAtttt > 1:200117/1‑251 (MQ=255) gAAGGAAACACCAGATCATCGGCACCGTCTTTGTATGTTTTCAGCTTGGCGTACATGGTTTCGTTCGACTCGTAAGTCGAATAGATAACCTTAATACCGGTTTCTTTGGTGAAC‑TGTTCAAGCAGTCC‑TGGCGGCACGTACTCGGTCCAGTTG‑TAGAAATACAGCGTGTTGTTGTCATCGGCGTGAGCGG‑CGCTCATGCCCCGTGCCAGAGCACCCGCGGCGAGCAGGTGGCGTGACCATTTTTTctctt > 2:198875/1‑246 (MQ=255) aGGAACCACCAGATCATAGGCACCGTCTTTGTATGTTTTCAGCTTGGCGTACATGGTTTCGTTCGACTCGTACGTCGAATAGATAACCTTAATACCGGTTTCTTTGGTGAAC‑TGTTCAAGCAGTCC‑TGGCGGCACGTACTCGGTCCAGTTG‑TAGAAATACAGCGTGTTGTTGTCATCGGCGTGGGCGG‑CGCTCATGCCCAGTGCCAGAGCACCCGCCGCGAGCAGATGGCGTGACCATTTTTTCATTTAAc > 1:914597/1‑251 (MQ=255) gAACCACCAGATCATAGGCACCGTCTTTGTATGTTTTCAGCTTGGCGTACATGGTTTCGTTCGACTCGTAAGTCGAATAGATAACCTTACTACCGGTTTCTTTGGTGAAC‑TGTTCAAGCAGTCC‑TGGCGGCACGTACTCGGTCCAGTTG‑TAGTAATACAGCGTGTTGTTGTCATCGGCGTGCGCGG‑CGCTCATGCCCAGTGCCAGAGCACCCGCCGCGAGCAGAGGGCGTGACCATTTTTTCATTTAACGt > 2:741071/1‑251 (MQ=255) caGATCATAGGCACCGTCTTTGTATGTTTTCAGCTTGGCGTACATGGTTTCGTTCGACTCGTAAGTCGAATAGATAACCTTAATACCGGTTTCTTTGGTGAAC‑TGTTCAAGCAGTCC‑TGGCGGCACGTACTCGGTCCAGTTG‑TAGAAATACAGCGTGTTGTTGTCATCGGCGTGAGCGG‑CGCTCATGCCCAGTGCCAGAGCACCCGCCGCGAGCAGATGGCGTGACCATTTTTTCATTTAACGTCCCCtgt > 1:404153/1‑251 (MQ=255) cATAGGCTCCTTCTTTTTTTGTTTTCGTGTTGGCGTACTGGGTTTCTGTCGACTCATAAGTCAAATAGATAACCTTAATCCCGTTTTCTTGGGTGAAC‑TGTTAAAGCAGCCC‑GGGCGGCATGTCCTGGGTCCGGTTG‑TAAAAATCCAGCTTGTTGTTGTCATCGGGGTGAGCGG‑CGCTCATGCCCTGTGCCAGAGCACCCGCCGCGAGCAGGTGGCGTGACCATTTTTTCATTTAACGTCCCCTGTGTTa < 2:513059/250‑1 (MQ=255) aTAGGCACCGTCTTTGTATGTTTTCAGCTTGGCGTACCTGGTTTCGTTCGACTCGTAAGTCGAATAGATAACCTTAATACCGGTTTCTTTGGTGAAC‑TGTTCAAGCAGTCC‑TGGCGGCACGTACTCGGTCCAGTTG‑TAGAAATACAGCGTGTTGTTGTCATCGGCGTGAGCGG‑CGCTCATGCCCAGTGCCAGAGCCCCCGCCGCGAGCAGATGGCGTGAACATTTTTTCATTTAAAGTCCCCTGTGTTAcc > 2:173090/1‑251 (MQ=255) cACCGTCTTTGTATTTTTTCGGCTTGGCGTACATGTTTTCGTTCGACTCGTAAGTCGAATAAATACCCTTAATACCGTTTTCTTTGGTGAAC‑TGTTCAAGCAGTCC‑TGGCGGCCCGTACTCGGTCCAGTTG‑TAGAAATACAGCGTGTTTTTGTCATCGGCGTGAGCGG‑CGCTCAGGCCCAGTCCCAGAGCACCCGCCGCGAGCAGATGGCGTGACCATTTTTTCATTTAACGTCCCCTGTGTTACCTTTCg < 1:584773/251‑1 (MQ=255) tCTTTGTATGTTTTCAGCTTGGCGTACATGGTTTCGTTCGACTCGTAAGTCGAATAGATAACCTTAATACCGGTTTCTTTGGTGAAC‑TGTTCAAGCAGTCC‑TGGCGGCACGTACTCGGTCCAGTTG‑TAGAAATACAGCGTGTTGTTGTCATCGGCGTGAGCGG‑CGCTCATGCCCAGTGCCAGAGCAACCGCCGCGAGCAGATGGCGTGACCATTTTTTCATTTAAc > 2:805944/1‑226 (MQ=255) gtgtagtttttCAGCTTGGCGTACATGGTTTCGTTCGATCCGTAAGACTAATAGTTATCCTTAAATCCGGTTTCTTTGGTGAAC‑TGTTCAAGCGGTCT‑GGGCGGCACGTACTCGGTCTAGTTG‑TAGAAATACATCGTTTTGTTGTCATGGGGTTGGGCGG‑CCCTCCTGCCCTTTGCCAGACCACCCGCCGCGAGCAGATTGCGTGACCATTTTTTCATTTAACGGCCCCTGTGTTACCTTTCGTTTTATc < 2:899326/243‑1 (MQ=255) ttttCAGCTTGGCGTACATGGTTTCGTTCGACTCGTAAGTCGAATAGATAACCTTACTACCGGTTTCTTTGGTGAAC‑TGTTCAAGCAGTCC‑TGGCGGCACGTACTCGGTCCAGTTG‑TAGAAATACAGCGTGTTGTTGTCATCGGCGTGAGCGG‑CGCTCATGCCCAGTGCCAGAGCACCCGCCGCGCGCAGATGGCGTGACCATTTTTTCCTTTAACGTCCCCTGTGTTTCCTTTCGTTTTATCACGTGCa > 2:925920/1‑250 (MQ=255) cTTGGCGTACATGGTTTCGTTCGACTCGTAAGTCGAATAGATAACCTTAATACCGGTTTCTTTGGTGAAC‑TGTTCAAGCAGTCC‑TGGCGGAACGTACTCGGTCCAGTTG‑TAGAAATACAGCGCGTTGTTGTCATCGGCGTAAGCGG‑CGCTCATGCCCAGTGCCAGAGCACCCGCCGCGTGCAGATGGCGTGACCATTTTTTCATTTAACTTCCCCTGTTTTAACTTTCTTTTTTTCACGCGCAATAAg‑ccg > 2:543606/1‑249 (MQ=255) gcgtagttGGTTTCGTCCGACTGGAAAGTGGAAAAAATAACTTAAATCCCGTTTTTTTGGGTAAAC‑TGTACAAGC‑GTCCCGGGGGGCACGTACTGGGCCCAGTTG‑TAGAAATCCGGCGGGTTGTTGCCACCGGCGGGGGGGG‑CCCCCTTGCCCAGGGCCAGAGCACCCGCCGCGAGCAGATGGCGTGACCATTTTTTCATTTAACGTCCCCTGTGTTACCTTTCGTTTTATCACGAGCAATAAg‑ctggctg < 2:142916/244‑1 (MQ=255) cATGGTTTCGTTCGACTCGTAAGTCGAATAGATAACCTTAATACCGGTTTCTTTGGTGAAC‑TGTTCAAGCAGTCC‑TGGCGGCACGTACCCGGTCCAGTTG‑TAGCACTACAGCGTGTTGTTGTCATCGGCGTGAGCGG‑CGCTCATGCCCCGTGCCAGAGCACCCGCCGCGGGCAGATGGCGGGACCATTTTTTCATTTCACGTCCCCTGTGTTACCTTTCGTTTTATCCCGAGCAATAAA‑Ccggctggcca > 2:912792/1‑248 (MQ=255) cgttcgACTCGTAAGTCGAATAGATAACCTTAATACCGGTTTCTTTGGTGAAC‑TGTTCAAGCAGTCC‑TGGCGGCACGTACTCGGTCCAGTTG‑TAGAAATACAGCGTGTTGTTGTCATCGGCGTGAGCGG‑CGCTCATGCCCAGTGCCAGAGCCCCCGCCGCGAGCAGATGGCGGGACCATTTTTTCATTTAACGTCCCCTGTGTTACCTTTCGTTTTATCACGAGCAATAAG‑CTGGCCGGCAATAACCATc > 2:23771/1‑250 (MQ=255) gaaatCGAATAGATAACCTTAATCCCTGTTTTTTTGG‑GAACCTGTACAAGCAGCCC‑GGGCGGCACGTCCTCGGCCCAGTTG‑AAGAAATCCAGCGTTTTTTTTGCAGCGGGGGGAGCGG‑CGCTCATCCCCAGTGCAAGAGCCCCCGCCGCGAGCAGATGGCGTGACCATTTTTTCATTTAACGTCCCCTGTGTTACCTTTCGTTTTATCACGAGCAATAAG‑CTGGCTGGCAATAACCATCACCAGCGACAGc < 1:912792/247‑1 (MQ=255) gTCGAATAGATAACCTTAATACCGGTTTCTTTGGTGAAC‑TGTTCAAGCAGTCC‑TGGCGGCACGTACTCGGTCCAGTTG‑TAGAAATACAGCGTGTTGTTGTCATCGGCGTGAGCGG‑CGCTCATGCCCAGTGCCAGAGCACCCGCCGCGAGCAGATGGCGTGACCATTTTTTCATTTAACGTCCCCTGTGTTACCTTTCGTTTTATCCAGAGCACTAAG‑CCGGCTGGCAATAACCCTCACCAGCGACCGCAcc > 2:491584/1‑251 (MQ=255) aaTAGATCACCTTAATACCGGTTTCTTTGGTGAAC‑TGTTCAAGCAGTCC‑TGGCGGCACGTACTCGGGCCAGTTG‑GAGAAATACCGCATGTTGTTGTCATAGGCGTGCGCGGACGC‑CATGCCCAGTGACAAAGGAACCGCCGCGAGATGGTGGGGTGACCATTTTTTGAATTATAGTCCCCTGGTTTACCTTTCGCTTTATCACGAACAATAAGACTG‑CGGGCAATAACCAACAcc > 2:753977/1‑235 (MQ=255) acccTTAATACCGGTTTCTTTGGTGAAC‑TGTTCAAGCAGTCC‑TGGCGGCACGTACTCGGTCCAGTTG‑TAGAAATACAGCGTGTTGTTGTCACCGGCGTGAGCGG‑CGCTCATGCCCAGTGCCAGAGCACCCGCCGCGAGCAGATGGCGTGACCATTTTTTCATTTAACGTCCCCTGTGTTACCTTTCGTTTTATCACGAGCAATAAG‑CTGGCTGGCAATAACCATCACCAGCGACAGCACCAGTAATATGGt < 1:491584/249‑1 (MQ=255) aaCCTTAATACCGGTTTCTTTGGTGAAC‑TGTTCAAGCAGTCC‑TGGCGGCACGTACTCGGTCCAGTTG‑TAGAAATACAGCGTGTTGTTGTCATCGGCGTGAGCGG‑CGCTCATGCCCAGTGCCAGAGCACCCGCCGCGAGCAGATGGCGTGACCATTTTTTCATTTAACGTCCCCTGTGTTACCTTTCGTTTTATCACGAGCAATAAG‑CTGGCTGGCAATAAACATCACCAGCGACAGCACCAGTAATATGGt > 1:96986/1‑251 (MQ=255) tAATACCGGTTTCTTGGGGGAAC‑TGTTCAAGCAGTCC‑TGGCGGCACTTACTCGGTCCATTTG‑TAGAAATACAGCGTGTTGTTGCCATCGGCGTGAGCGG‑CGCTCATGCCCAGTGCCAGAGCCCCCGCCGCGAGCAGATGGCGTGACCATTTTTTCATTTAACGTCCCCTGTGTTACCTTTCGTTTTATCACGAGCAATAAG‑CTGGCTGGCAATAACCATCACCAGCGACAGCACCAGTAATATGGTTGcc < 1:411935/250‑1 (MQ=255) aaTACCGGTTTCTTTGGTGAAC‑TGTTCAAGCAGTCC‑TGGCGGCACGTACTCGGTCCAGTTG‑TAGAAATACAGCGTGTTGTTGTCATCGGCGTGAGCGG‑CGCTCATGCCCAGTGCCAGAGCACCCGCCGCGAGCAGGTGGCGTGACCATTTTTTCATTTAACGTCCCCTGTGTTACCTTTCGTTTTATCACGAGCAATAAG‑CTGGCTGGCAATAACCATCACCAGCGACAGCACCAGTAATATGGTTGCCAg < 1:23530/251‑1 (MQ=255) tACCGGTTTCTTTGGTGAAC‑TGTTCAAGCAGTCC‑TGGCGGCACGTACTCGGTCCAGTTG‑TAGAAATACAGCGTGTTGTTGTCATCGGCGTGAGCGG‑CGCTCATGCCCAGTGCCAGAGCACCCGCCGCGAGCAGATGGCGTGACCCTTTTTTCATTTAACGTCCCCTGTGTTACCTTTCGTTTTATCACGAGCAATAAG‑CTGGCTGGCAATAACCATCACCAGCGACAGCACCAGTAATATGGTTGCCAgcg > 1:233632/1‑251 (MQ=255) tCTTTGGTGAAC‑TGTTAAAGCATGCC‑GGGCGGCGCGTACGCGGTCC‑GTTGGAAGAAATACGGGGTGTTGTTGGCATCGGCGTGAGCGG‑CGCTCATGCCCAGTGCCAGAGCACCCGCCGCGAGCAGATGGCGTGACCATTTTTTCATTTAACGTCCCCTGTGTTACCTTTCGTTTTATCACGAGCAATAAG‑CTGGCTGGCAATAACCATCACCAGCGACAGCACCAGTAATATGGTTGCCAGCGAGTTAAc < 1:904732/250‑1 (MQ=255) cTTTGGAGCAC‑TGTTCAAGCAGTCC‑TGGCGGCACGTACTCGGTCCAGTTG‑TAGAAATACAGCGTGTTGTTGTCATCGGCGTGAGCGG‑CGCTCATGCCCAGTGCCAGAGCACCCGCCGCGAGCAGGTGGCGTGACCATTTTTTCATTTAACGTCCCCTGTGTTACCTTTCGTTTTATCACGAGCAATAAG‑CTGGCTGGCAATAACCATCACCa > 1:244291/1‑212 (MQ=255) tttGGTGAAC‑TGTTCAAGCAGTCC‑TGGCGGCAGGTACTCGGTCCAGTTG‑TAGAATTACAGCGGGTTGTTGTCATCGGCGTGAGCGG‑CGCTCATGCCCAGTGCCAGAGCACCCGCCGCGGGCAGATGGCGTGAc > 2:290624/1‑133 (MQ=255) tttGGTGAAC‑GGTTAAAGCAGTCC‑TGGCGGCACGTCCTCGGTCCAGTTG‑TAGAAATACAGCGTGTTGTTGCCATCGGCGGGAGCGG‑CGCTCATGCCCAGTGCAAGAGCACCCGCCGCGAGCAGATGGCGTGAc < 1:290624/133‑1 (MQ=255) ggTGAAC‑TGTTCACGCAGTCC‑TGGCGGCACGTACTCGGTCCAGTTG‑TAGAAATACAGCGTGTTGTTGTCATCGGCGTGAGCGG‑CGCTCATGCCCAGTGCCAGAGCACCCCCCGCGGGCAGATGGCGTGACCATTTTTTCATTTAACGTCCCCTGTCTTACCTTTCGTTTTATCCCGAGCAATAAG‑CTGGCTGGCAATAACCATCCCCAGCGCCAGACCCAGTAATATGGTTGCCAGCGCGTTAACTTCCgg > 2:793116/1‑251 (MQ=255) gTGAAC‑TGTTCAAGCAGTCC‑TGGCGGCACGTACTCGGTCCAGTTG‑TAGAAATACAGCGTGTTGTTGTCATCGGCGTGAGCGG‑CGCTCATGCCCAGTGCCAGAGCACCCGCCGCGAGCAGATGGCGTGACCATTTTTTCATTTAACGTCCCCTGTGTTACCTTTCGTTTTATCACGAGCAATAAG‑CTGGCTGGCAATAACCATCACCAGCGACAGCCCCAGTAATATGGTTGCCAGCGCGTTAACTTCCGGc > 2:293551/1‑251 (MQ=255) gAAC‑TGTTCAAGCAGTCC‑TGGCGGCACGTACTCGGTCCAGTTG‑TAGAAATACAGCGTGTTGTTGTCATCGGCGTGAGCGG‑CGCTCATGCCCAGTGCCAGAGCACCCGCCGCGAGCAGATGGCGTGACCATTTTTTCATTTAACGTCCCCTGTGTTACCTTTCGTTTTATCACGAGCAATAAG‑CTGGCTGGCAATAACCATCACCAGCGACAGCACCCGTAATATGGTTGCCAGCGCGTTAACTTCCGGCg > 2:270338/1‑250 (MQ=255) aaC‑TGTTCAAGCAGTCC‑TGGCGGCACGTACTGGGTCCAGTGG‑TAGAAATACAGCGTGTTGTTGCCATCGGCGTGAGCGG‑CCCCCATCCCCAGTCCCAAAGCTCCCGCCGCGAGCAGATGGCGTGACCATTTTTTCATTTAACGTCCCCTGTGTTACCTTTCGTTTTATCACGAGCAATAAG‑CTGGCTGGCAATAACCATCACCAGCGACAGCACCAGTAATATGGTTGCCAGCGCGTTAACTTCCGGCGAt < 2:233632/251‑1 (MQ=255) aaC‑TGTTCAAGCAGTCC‑TGGCGGCACGTACTCGGTCCAGTTG‑TAGAAATACAGCGTGTTGTTGTCATCGGCGTGAGCGG‑CGCTCATGCCCAGTGCCAGAGCACCCGCCGCGAGCAGATGGCGTGACCATTTTTTCATTTAACGTCCCCTGTGTTACCTTTCGTTTTATCACGAGCAATAAG‑CTGGCTGGCAATAACCATCACCAGCGACAGCACCCGTAATATGGTTGCCCGCGCGTTAACTTCCGGCGAt > 2:52630/1‑251 (MQ=255) gTTCAAGCAGTCC‑TGGCGGCACGTACTCGGTCCAGTTG‑TAGAAATACAGCGTGTTGTTGTCATCGGCGTGAGCGG‑CGCTCATGCCCAGTGCCAGAGCACCCGCCGCGAGCAGATGGCGTGACCATTTTTTCATTTAACGTCCCCTGTGTTACCTTTCGTTTTATCACGAGCAATAAG‑CTGGCTGGCAATAACCATCACCAGCGACAGCACCAGTAATATGGTTGCCAGCGCGTTAACTTCCGGCGATACGc < 1:293551/251‑1 (MQ=255) ttCAAGCAGTCC‑TGGCGGCACGTACTCGGTCCAGTTG‑TAGAAATACAGCGTGTTGTTGTCATCGGCGTGAGCGG‑CGCTCATGCCCAGTGCCAGAGCACCCGCCGCGAGCAGATGGCGTGACCATTTTTTCATTTAACGTCCCCTGTGTTACCTTTCGTTTTATCACGAGCAATAAG‑CTGGCTGGCAATAAACATCACCCGCGACAGCACCAGTAATATGGTTGCCCGCGCGTTAACTTCCGGCGATACGcc > 1:308412/1‑251 (MQ=255) cAAGCAGTCC‑TGGGGGCACGTCCTGGGTCAAGTTG‑TAGAAATACAGCGTTTTGTTTTCATGGGCGTGGCCGG‑CGCTAAGGCCCAGTGCCAGAGCCCCCGCCGCGAGCAGGTGGCGTGACCATTTTTTCATTTAACGTCCCCTGTGTTACCTTTCGTTTTATCACGAGCAATAAG‑CTGGCTGGCAATAACCATCACCAGCGACAGCACCAGTAATATGGTTGCCAGCGCGTTAACTTCCGGc < 1:535770/241‑1 (MQ=255) cAAGCAGTCC‑TGGCGGCACGTACTCGGTCCAGTTG‑TAGAAATACAGCGTGTTGTTGTCATCGGCGTGAGCGG‑CGCTCATGCCCAGTGCCAGAGCACCCGCCGCGAGCAGGTGGCGTGACCATTTTTTTATTTAACGTCCCCTGTGTTACCTTTCGTTTTATCACGAGCAATAAG‑CTGGCTGGCAATAACCATCACCAGCGACAGCACCAGTAAATTGGTTGCCAGCGCGTTAACTTCCGGc > 2:535770/1‑241 (MQ=255) atcggTCC‑TGGCGGCACGTCGTCGGTCCATTTG‑AGGAAATACAGCGTGTTTTTTTCATCGGCGTGGGCGG‑CGCTCAGGCCAAGTGCCAGATACCCCGCCGCGAGCAGATGGCGTGACCATTTTTTCATTTAACGTCCCCTGTGTTACCTTTCGTTTTATCACGAGCAATAAG‑CTGGCTGTCAATAACCATCACCAGCGACAGCACCAGTAATTTGGTTGCCAGCGCGTTAACTTCCGGCGATACGCCGACt < 1:600185/247‑1 (MQ=255) gCAGTCC‑TGGCGGCACGTATTCGGTCCGGTTG‑AAGAAATACAGGTTGTTGTTTTCATGGGCGGGAGCGG‑CGAGCATGCCCAGTGCCAGAGCACCCGCCGCGAGCAGATGGCGTGACCATTTTTTCATTTAACGTCCCCTGTGTTACCTTTCGTTTTATCACGAGCAATAAG‑CTGGCTGGCAATAACCATCACCAGCGACAGCACCAGTAATATGGTTGCCAGCGCGTTAACTTCCGGCGATACGCCGACtt < 1:173090/251‑1 (MQ=255) gCAGTCC‑TGGCGGCACGTACTCGGTCCAGTTG‑TAGAAATACAGCGTGTTGTTGTCATCGGCGTGAGCGG‑CGCTCATGCCCAGTGCCAGAGCACCCGCCGCGAGCAGATGGCGTGACCATTTTTTCATTTAACGTCCCCTGTGTTACCTTTCGTTTTATCACGAGCAAt > 1:679603/1‑168 (MQ=255) cAGTCC‑GGGCGGCACGTACTCGGTCCAGTTG‑TAGAAATACAGCGTGTTGTTGTCATCGGCGTGAGCGG‑CGCTCATGCCCAGTGCCAGAGCACCCGCCGCGAGCAGATGGCGTGACCATTTTTTCATTTAACGTCCCCTGTGTTACCTTTCGTTTTATCACGAGCAATAAG‑CTGGCTGGCAATAACCATCACCAGCGACAGCACCAGTAATATGGTTGCCAGCGCGTTAACTTCCGGCGATACGCCGACttt < 1:52630/251‑1 (MQ=255) aGTCC‑TGGCGGCACGTACTCGGTCCAGTTG‑TAGAAATACAGCGTGTTGTTGTCATCGGCGTGAGCGG‑CGCTCATGCCCAGTGCCAGAGCACCCGCCGCGAGCAGATGGCGGGACCATTTTTTCATTTAACGTCCCCTGTGTTACCTTTCGTTTTATCACGAGCAATAAG‑CTGGCTGGCAATAACCATCACCCGCGACAGCCCCAGTAATATGGTTGCCAGCGCGTTAACTTCCGGCGATACGCCGACtttt > 2:2688/1‑250 (MQ=255) cccgatcggcACGTACTCGGTCCATTTG‑AAGAAATACAGCGTTTTGTTGTCATGGGCGGGAGCGG‑CGCTCATGCCCAGGGCCAGAGCACCCGCCGCGAGCAGATGGCGTGACCATTTTTTCATTTAACGTCCCCTGTGTTACCTTTCGTTTTATCACGAGCAATAAG‑CTGGCTGGCAATAACCATCACCAGCGACAGCACCAGTAATATGGTTGCCAGCGCGTTAACGTCCGGCGATACGCCGACTTTGAc < 1:804730/245‑1 (MQ=255) c‑TGGCGGCACGTACTCGGTCCAGTTG‑TAGAAATACAGCGTGTTGTTGTCATCGGCGTGCGCGG‑CGCTCATGCCCAGTGCCAGAGCACCCGCCGCGAGCAGGTGGCGTGACCATTTTTTCATTTAACGTCCCCTGTGTTACCTTTCGTTTTATCACGAGCAATAAG‑CTGGCTGGCAATAACCATCACCAGCGACAGCACCAGTAATATGGTTGCCAGCGCGTTAACTTCCGGCGATACGCCGACTTTGAccc > 2:764149/1‑250 (MQ=255) ggcACGTACTCGGTCCAGTTG‑TAGAAATACAGCGTGTTGTTGTCATCGGCGTGAGCGG‑CGCTCATGCCCAGTGCCAGAGCACCCGCCGCGAGCAGGTGGCGTGACCATTTTTTCATTTAACGTCCCCTGTGTTACCTTTCGTTTTATCACGAGCAATAAG‑CTGGCTGGCAATAACCATCACCAGCGACAGCACCAGTAATATGGTTGCCAGCGCGTTAAATTCCGGCGCTACGCCGACTTTGACCATCGa > 1:912086/1‑250 (MQ=255) gcACGTACTCGGTCCAGTTG‑TAGAAATACAGCGTGTTGTTGTCATCGGCGTGAGCGG‑CGCTCATGCCCAGTGCCAGAGCCCCCGCCGCGAGCAGATGGCGTGACCATTTTTTCATTTAACGTCCCCTGTGTTACCTTTCGTTTTATCACGAGCAATAAG‑CTGGCTGGCAATAACCATCACCAGCGACAGCACCAGTAATATGGTTGCCAGCGCGTTAACTTCCGGCGATACGCCGACTTTGACCATCGAAt > 1:854662/1‑251 (MQ=255) gcACGTACTCGGTCCAGTTG‑TAGAAATACAGCGTGTTGTTGTCATCGGCGTGAGCGG‑CGCTCATGCCCAGTGCCAGAGCACCCGCCGCGAGCAGATGGCGTGACCATTTTTTCATTTAACGTCCCCTGTGTTACCTTTCGTTTTATCACGAGCAATAAG‑CTGGCTGGCAATAACCATCACCCGCGACAGCACCCGGAATATGGTTGCCAGCGCTTTAACTTCCGGCGCTACGCCGACTTTGAccgttcgg > 2:804730/1‑244 (MQ=255) gTACTCGGTCCAGTTG‑TAGAAATACAGCGTGTTGTTGTCATCGGCGTGAGCGG‑CGCTCCTGCCCAGTGCCAGAGCACCCGCCGCGAGCAGGTGGCGGGACCCTTTTTTCATTTAACGTCCCCTGTGTTACCTTTCGTTTTATCACGAGCAATAAA‑CTGGCTGGCAATAACCATCACCAGCGACAGCACCAGTAATATGGTTGCCAGCGCGTTAACTTCCGGCGAAACGCCGACTTTGAcccgcgcaaaaa > 2:30533/1‑240 (MQ=255) ccTCGGTCCAGTTG‑TAAAAATACAGCGTGTTGTTGCCATCGGCGGGAGCGG‑CGCTCATGCCCAGTGCAAGAGCACCCGCCGCGAGCAGATGGCGTGACCATTTTTTCATTTAACGTCCCCTGTGTTACCTTTCGTTTTATCACGAGCAATAAG‑CTGGCTGGCAATAACCATCACCAGCGACAGCACCAGTAATATGGTTGCCAGCGCGTTAACTTCCGGCGATACGCCGACTTTGACCATCGAATAAAttt < 1:154310/250‑1 (MQ=255) aCTCGGTCCAGTTG‑TAGAAATACAGCGTGTTGTTGTCATCGGCGTGAGCGG‑CGCTCATGCCCAGTGCCAGAGCACCCGCCGCGAGCAGATGGCGGGACCATTTTTTCATTTAACGTCCCCTGTGTTACCTTTCGTTTTATCACGAGCAATAAG‑CTGGCTGGCAATAACCATCACCAGCGACAGCACCAGTAATATGGTTGCCAGCGCGTTAACTTCCGGCGATACGCCGACTTTGAc > 1:120300/1‑237 (MQ=255) cGGTTCAGTTG‑TCGAAATACGGCGTTTTTTTGTCTCCGGCGGGGGCGG‑CGCTCATGCCGGGGGTCATTGCCCCCGCCGCGAGCAGATGGCGTGACCATTGTTTCATTTAACGTCCCCTGTGTTACCTTTCTTTTTATCACGAGCAATAAG‑CTGGCTGGCAATAACCATCTCCAGCGACAGCACCAGTAATATGGTTGCCAGCGCGTGAACTTCCGGCGATACGCCGACTTTGACCATCGAATAAAtttt < 1:861819/249‑1 (MQ=255) aGTTG‑TAGAAATACAGCGTGTTGTTGTCATCGGCGTGAGCGG‑CGCTCATGCCCAGTGCCAGAGCACCCGCCGCGAGCAGGTGGCGTGACCATTTTTTCATTTAACGTCCCCTGTGTTACCTTTCGTTTTATCACGAGCAATAAG‑CTGGCTGGCAATAACCATCACCAGCGACAGCACCAGAAATATGGTTGCCAGCGCGTTAACTTCCGGCGATACGCCGACTTTGACCATCGAATAAATTTTTAACGGc > 1:767699/1‑250 (MQ=255) gTTG‑TAGAAATACAGCGTGTTGTTGTCATCGGCGGGAGCGG‑CCCTCATGCCCAGGGCCAGAGCCCCCGCCGCGAGCAGATGGCGTGACCATTTTTTCATTTAACGTCCCCTGTGTTACCTTTCGTTTTATCACGAGCAATAAG‑CTGGCTGGCAATAACCATCACCAGCGACAGCACCAGTAATATGGTTGCCAGCGCGTTAACTTCCGGCGATACGCCGACGTTGACCATCGAATAAAGTTTTAACGGCAg < 1:793116/251‑1 (MQ=255) aaaTACAGCGTGTTGTTGTCATCGGCGTGAGCGG‑CGCTCATGCCCAGTGCCAGAGCACCCGCCGCGAGCAGATGGCGTGACCATTTTTTCATTTAACGTCCCCTGTGTTACCTTTCGTTTTATCACGAGCAATAAG‑CTGGCTGGCAATAACCATCACCAGCGACAGCACCAGTAATATGGTTGCCAGCGCGTTAACTTCCGGCGATACGCCGACTTTGACCATCGAATAAATTTTTAACGGCAGAATTTc > 1:140059/1‑250 (MQ=255) aaTACAGCGTGTTGTTGTCATCGGCGTGAGCGG‑CGCTCATGCCCAGTGCCAGAGCACCCGCCGCGAGCAGATGGCGTGACCATTTTTTCATTTAACGTCCCCTGTGTTACCTTTCGTTTTATCACGAGCAATAAG‑CTGGCTGGCAATAACCATCACCAGCGACAGCACCAGTAATATGGTTGCCAGCGCGTTAACTTCCGGCGa > 1:69132/1‑204 (MQ=255) gCGTGTTGTTGTCATCGGCGTGAGCGG‑CGCTCATGCCCAGTGCCAGAGCACCCGACGCGAGCAGATGGCGTGACCATTTTTTCATTTAACGTCCCCTGTGTTACCTTTCGTTTTATCACGAGCAATAAG‑CTGGCTGGCAATAACCATCACCCGCGACAGCACCAGTAATATGGTTGCCAGCGCGTTAACTTCCGGCGATACGCCGACTTTGACCATCGAATAAATTTTTAACGGCAGAATTTCATAACttt > 2:644020/1‑250 (MQ=255) gtgtTGTTGTCATCGGCGTGAGCGG‑CGCTCCTGCCCAGGGCCAGAGCACCCGCCGCGAGCCGGTGGCGTGACCATTTTTTCATTTAACGCCCCCTGTGTTACCTTTAGTTTTATCACGAGCAATAAC‑CTCGCTGGCAATAACCCTCACCAGCGACAACACCCGTAATATGGTTGCCAGCGCGTTAACTTCCGGGGATACGCCGACTTTTAACCTCATAAAAAATTTTAACGGCAGAATTTCaacactttgg > 2:868523/1‑242 (MQ=255) gttgttgtCATCGGCGTGAGCGG‑CGCTCATGCCCAGTGCCAGAGCACCCGCCGCGCGCAGATGGCGTGACCATTTTTTCATTTCACGTCCCCTGTGTTACCTTTCGTTTTATCACGAGCAATAAG‑CTGGCTGGCAATAAcc > 2:830233/1‑141 (MQ=255) gttgttgtCATCGGCGTGAGCGG‑CGCTCATGCCCAGTGCCAGACCACCCGCCGCGAGCAGATGGCGTGACCATTTTTTCATTTAACGTCCCCTGTGTTACCTTTCGTTTTATCACGAGCAATAAG‑CTGGCTGGCAATAAcc < 1:830233/141‑1 (MQ=255) tgttgtCAGCGGCGTGAGCGG‑CGCTCATGCCCAGTGCCAGAGCCCCCGCCGCGAGCAGGTGGCGTGACCATTTTTTCATTTAACGTCCCCTGTGTTACCTTTCGTTTTATCACGAGCAATAAG‑CTGGCTGGCAATAACCATCACCAGCGACAGCACCAGTAATATGGTTGCCAGCGCGTTAACTTCCGGCGATACGCCGACTTTGACCATCGAATAAATTTTTAACGGCAGAATTTCATAACTTGGTCCg < 1:247922/250‑1 (MQ=255) ttgtCATCGGCGTGAGCGG‑CGCTCATGCCCAGTGCCAAAGCACCCGCCGCGAGCAGATGGCGTGACCATTTTTTCATTTAACGTCCCCTGAGTTACCTTTCGTTTTATCACGAGCAATAAG‑CTGGCCGGCAATAACCATCACCAGCGACAGCACCAGTAATATGGTTGCCAGCGCGTTAACTTCCGGCGACACGCCGACTTTGACCATCGAATAAATTTTTAACGGCAGAATTTCATAACTTGGTCCGGTg > 2:183285/1‑251 (MQ=255) aTCGGCGTGAGCGG‑CGCTCAAGCCCAGTGCCAGAGAACCCGCCCCGGGCAGGGGGGGTGAACATTTTTTTATTTAACGGCCCCTGTGTTACCTTTCGTTTTTTCACGAGCAATAAG‑CTGGCTGGCAAAAACCATCCCCAGCGACAGCACCAGTAATATGGTTGCCAGCGCGTTAACTTCCGGCGATACGCCGACTTTGACCCTCGAATAAATTTTTAAAGGCAGGAATTCATAAATTTGGCCGGTggcgg > 2:681191/1‑246 (MQ=255) cggcggGAGCGG‑CCCTCATGCCCGGTGCCAGAGCACCCGCCGCGAGCAGGTGGCGTGACCATTTTTTCATTTAACGTCCCCTGTGTTACCTTTCGTTTTATCACGAGCAATAAG‑CTGGCTGGCAATAACCATCACCAGCGACAGCACCAGTAATATGGTTGCCAGCGCGTTAACTTCCGGCGATACGCCGACTTTGACCATCGAATAAATTTTTAACGGCAGAATTTCATAACTTGGTCCGGTGacgaac < 1:764149/250‑1 (MQ=255) cGGCGTGAGCGG‑CGCTCTTGCCCAGTGCCAGAGCACCCGCCGCGAGCAGATGGCGTGACCATTTTTTCATTTAACGTCCCCTGTGTTACCTTTCGTTTTATCACGAGCAATAAG‑CTGGCTGGCAATAACCATCACCAGCGACAGCACCAGTAATATGGTTGCCAGCGCGTTAACTTCCGGCGATACGCCGACTTTGACCATCGAATAAATTTTTAACGGCAGAATTTCATAACTTGGTCCGGTGacgaac < 1:543606/250‑1 (MQ=255) gcgtgggcggccctcatcccgcgggCCAGCGCCCCCGCCGCGAGCAGATGGCGTGACCATTTTTTCATTTAACGTCCCCTGTGTTACCTTTCGTTTTATCACGAGCAATAAG‑CTGGCTGGCAATAACCATCACCAGCGACAGCACCAGTAATATGGTTGCCAGCGCGTTAACTGCCGGCGATACGCCGACTTTGACCATCGAATAAATTTTTAACGGCAGAATTTCATAACTTGGTCCGGTGAcgaacgaa < 2:854662/227‑1 (MQ=255) gTGAGCGG‑CGCTCATGCCCAGTGCCAGAGCACCCGCCGCGAGCAGGTGGCGTGACCATTTTTTCATTTAACGTCCCCTGTGTTACCTTTCGTTTTATCACGAGCAATAAG‑CTGGCTGGCAATAACCATCACCAGCGACAGCACCAGTAATATGGTTGCCAGCGCGTTAACTTCCGGCGATACGCCGACTTTGACCATCGAATAAATTTTTAACGGCAGAATTTCATAACTTGGTCCGGTGacgaacga > 1:738773/1‑248 (MQ=255) gAGCGG‑CCCCCAGGCCCGGTCCCAGAGCACCCGCCGCGAGCAGATGGCGTGACCATTTTTTCATTTAACGTCCCCTGTGTTACCTTTCGTTTTATCACGAGCAATAAG‑CTGGCTGGCAATAACCATCACCAGCGACAGCACCAGTAATATGGTTGCCAGCGCGTTAACTTCCGGCGATACGCCGACTTTGACCATCGAATAAATTTTTAACGGCAGAATTTCATAACTTGGTCCGGTGACGAACGAAGaaa < 1:644020/251‑1 (MQ=255) ggcccccatgcccgtggCCAGAGCCCCCGCCGCGAGCAGATGGCGTGACCATTTTTTCATTTAACGTCCCCTGTGTTACCTTTCGTTTTATCACGAGCAATAAG‑CTGGCTGGCAATAACCATCACCAGCGACAGCACCAGTAATATGGTTGCCAGCGCGTTAACTTCCGGCGATACGCCGACTTTGACCATCGAATAAATTTTTAACGGCAGAATTTCATAACTTGGTCCGGTGACGAACGAAGAAACTAc < 2:96986/235‑1 (MQ=255) cgcTCATGCCCAGTGCCAGAGCACCCGCCGCGAGCAGATGGCGTGACCATTTTTTCATTTAACGTCCCCTGTGTTACCTTTCGTTTTATCACGAGCAATAAG‑CTGGCTGGCAATAACCATCACCAGCGACAGCACCAGTAATATGGTTGCCAGCGCGTTAACTTCCGGCGATACGCCGACTTTGACCATCGAATAAATTTTTAACGGCAGAATTTCATAACTTGGTCCGGTGACGAACGAAGAAACTAcc > 2:817191/1‑250 (MQ=255) gcTCATGCCCAGGGCCAGAGCACCCGCCGCGAGCAGATGGCGTGCCCATTTTTTCATTTAACGTCCCCTGTGTTACATTTCGTTTTATCACGAGCCCTAAG‑CTGGCTGGCAATACCCATCACCAGCGACAGCACCAGTAATATGGTTGCCAGCGCGTTAACTTCCGGCGATGCGCCGACTTTGCGCATCGAATAAATTTTTAACGGCAGAATTTCATAACTTGGTCCGGTGACGAACGAAGAAACTACca > 2:616784/1‑250 (MQ=255) cTCATGCCCAGTGCCAGAGCACCCGCCGCGAGCAGGTGGCGTGACCATTTTTTCATTTAACGTACCCTGTGTTACCTTTCGTTTTATCACGAGCAATAAG‑CTGGCTGGCAATAACCATCCCCAGCGACCGCACCAGTAATATGGTTGCCAGCGCGTTAACTTCCGGCGATACGCCGACTTTGACCATCGAATAAATTTTTAACGGCAGAATTTCATAACTTGGTCCGGTGACGAACGAAGAAACTACcac > 1:944790/1‑250 (MQ=255) ccggtcccgcaccccccGCCGCGAGCAGGTGGCGTGACCATTTTTTCATTTAACGTCCCCTGTGTTACCTTTCGTTTTATCACGAGCAATAAG‑CTGGCTGGCAATAACCATCACCAGCGACAGCACCAGTAATATGGTTGCCAGCGCGTTAACTTCCGGCGATACGCCGACTTTGACCATCGAATAAATTTTTAACGGCAGAATTTCATAACTTGGTCCGGTTACTAACGAAGAAACTACCACATCGTCCa < 2:912086/237‑1 (MQ=255) cAGTGCCAGAGCACCCGCCGCGAGCAGATGGCGTGACCATTTTTTCATTTAACGTCCCCTGTGTTACCTTTCGTTTTATCACGAGCAATAAG‑CTGGCTGGCAATAACCATCACCAGCGACAGCACCAGTAATATGGTTGCCAGCGCGTTAACTTCCGGCGATACGCCGACTTTGACCATCGAATAAATTTTTAACGGCAGAATTTCATAACTTGGTCCGGTGACGAACGAAGAAACTACCACATCGTCCAt > 1:655176/1‑251 (MQ=255) cccGCCGCGAGCAGATGGCGTGACCATTTTTTCATTTAACGTCCCCTGTGTTACCTTTCGTTTTATCACGAGCAATAAG‑CTGGCTGGCAATAACCATCACCAGCGACAGCACCAGTAATATGGTTGCCAGCGCGTTAACTTCCGGCGATACGCCGACTTTGACCATCGAATAAATTTTTAACGGCAGAATTTCATAACTTGGTCCGGTGACGAACGAAGAAACTACCACATCGTCCATCGACAGGGTaa > 1:141582/1‑249 (MQ=255) cgAGCAGATGGCGTGACCATTTTTTCATTTAACGTCCCCTGTGTTACCTTTCGTTTTATCACGAGCAATAAG‑CTGGCTGGCAATAACCATCACCAGCGACAGCACCAGTAATATGGTTGCCAGCGCGTTAACTTCCGGCGATACGCCGACTTTGACCATCGAATAAATTTTTAACGGCAGAATTTCATAACTTGGTCCGGTGACGAACGAAGAAACTTCCACATCGTCCATCGACAGGGTAAAGCTTAaca < 2:141582/251‑1 (MQ=255) | TTTATCAACGTAATAGGTTGAAGGAACCACCAGATCATAGGCACCGTCTTTGTATGTTTTCAGCTTGGCGTACATGGTTTCGTTCGACTCGTAAGTCGAATAGATAACCTTAATACCGGTTTCTTTGGTGAAC‑TGTTCAAGCAGTCC‑TGGCGGCACGTACTCGGTCCAGTTG‑TAGAAATACAGCGTGTTGTTGTCATCGGCGTGAGCGG‑CGCTCATGCCCAGTGCCAGAGCACCCGCCGCGAGCAGGTGGCGTGACCATTTTTTCATTTAACGTCCCCTGTGTTACCTTTCGTTTTATCACGAGCAATAAG‑CTGGCTGGCAATAACCATCACCAGCGACAGCACCAGTAATATGGTTGCCAGCGCGTTAACTTCCGGCGATACGCCGACTTTGACCATCGAATAAATTTTTAACGGCAGAATTTCATAACTTGGTCCGGTGACGAACGAAGAAACTACCACATCGTCCATCGACAGGGTAAAGCTTAACA > NC_000913/1182563‑1183052 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |