mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.39.0
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,326,450 | 0 | T | G | 35.0% | 61.6 / 10.7 | 40 | G114G (GGT→GGG) | atoB | acetyl‑CoA acetyltransferase |
| * | NC_000913 | 691,883 | 0 | C | T | 28.6% | 82.2 / 12.6 | 49 | E153E (GAG→GAA) | ybeY | endoribonuclease YbeY |
| * | NC_000913 | 3,965,574 | 0 | C | A | 25.4% | 89.7 / 40.4 | 55 | K19N (AAG→AAT) | rhlB | ATP‑dependent RNA helicase RhlB |
| * | NC_000913 | 941,713 | 0 | T | G | 20.9% | 102.7 / 10.0 | 43 | V252G (GTG→GGG) | dmsA | dimethyl sulfoxide reductase subunit A |
| * | NC_000913 | 1,466,276 | 0 | T | C | 20.8% | 161.0 / 10.5 | 81 | pseudogene (885/2518 nt) | ydbA | putative outer membrane protein, N‑terminal fragment |
| * | NC_000913 | 458,189 | 0 | A | G | 20.6% | 142.4 / 10.5 | 63 | D255G (GAT→GGT) | clpX | ATP‑dependent Clp protease ATP‑binding subunit ClpX |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 4542682 = | 18 (0.360) | 3 (0.060) | 3/472 | 4.5 | 10.5% | intergenic (+49/‑433) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit |
| ? | NC_000913 | 4542996 = | 34 (0.710) | intergenic (+363/‑119) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit | |||||
| * | ? | NC_000913 | 3981422 = | 48 (0.970) | 3 (0.060) | 3/482 | 4.5 | 7.1% | coding (536/1386 nt) | yifK | putative transporter YifK |
| ? | NC_000913 | = 4596448 | 31 (0.640) | coding (459/1023 nt) | lgoD | L‑galactonate oxidoreductase | |||||
| * | ? | NC_000913 | 622836 = | 54 (1.090) | 3 (0.060) | 3/482 | 4.5 | 4.9% | coding (537/1251 nt) | entS | enterobactin exporter EntS |
| ? | NC_000913 | = 1500945 | 64 (1.320) | coding (373/993 nt) | tehA | tellurite resistance protein | |||||
| * | ? | NC_000913 | 3378326 = | 41 (0.830) | 3 (0.060) +A |
3/488 | 4.6 | 7.0% | coding (326/429 nt) | rplM | 50S ribosomal subunit protein L13 |
| ? | NC_000913 | = 4261675 | 39 (0.790) | coding (7/1038 nt) | dusA | tRNA‑dihydrouridine synthase A | |||||