New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	3981422 =	48 (0.970)	3 (0.060)	3/482	4.5	7.1%	coding (536/1386 nt)	yifK	putative transporter YifK
	?	NC_000913	= 4596448	31 (0.640)					coding (459/1023 nt)	lgoD	L‑galactonate oxidoreductase
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GGTAAAAATATTGCTGATCTTAAAAATGGTCAGCAAGTTGCTGTGATCCCTTATGTTGCCTGTCAGCAATGCCCGGCGTGTAAAAGCGGGCGTACCAATTGCTGTGAAAAAATTTCAGTCATTGGCGTGCATCAGGATGGCGGTTTTAGTGAGTATTTGAGCGTGCCGGTGGCGAACATTTTGCCCGCAGACGGTATTGACCCGCAGGCGGCAGCATTGATTGAACCTTTCGCTATTAGCGCTCATGCGGTGCGTCGCGCAGCCATTGCTCCCGGCGAGCAGGTGCTGGTGGTCGGGGCGGGGCCAATCGGTCTGGGCGCGGCGGCAATCGCTAAAGCCGATGGCGCACAGGTGGTGGTGGCGGATACCAGTCCGGCGCGCCGTGAACATGTGGCAACGCGTCTGGAATTACCTTTACTGGACCCGTCAGCCGAAGATTTTGACGCGCAGCTACGGGCGCAGTTTGGTGGTTCGCTGGCGCAG  >  NC_000913/4596203‑4596685                                                                                                                                                                                                                                                      |                                                                                                                                                                                                                                              ggTAAAAATATTGCTGATCTTAAAAATGGTCAGCAAGTTGCTGTGATCCCTTATGTTGCCTGTCAGCAATGCCCGGCGTGTAAAAGCGGGCGTACCAATTGCTGTGAAAAAATTTCAGTCATTGGCGTGCATCAGGATGGCGGTTTTAGTGAGTATTTGAGCGTGCCGGTGGCGAACATTTTGCCCGCAGACGGTATTGACCCGCAGGCGGCAGCATTGATTGAACCTTTCGCTCTTAGCGCTCATGCggg                                                                                                                                                                                                                                          >  2:282293/1‑250 (MQ=255) ggTAAAAATATTGCTGATCTTAAAAATGGTCAGCAAGTTGCTGTGATCCCTTATGTTGCCTGTCAGCAATGCCCGGCGTGTAAAAGCGGGCGTACCAATTGCTGTGAAAAAATTTCAGTCATTGGCGTGCATCAGGATGGCGGTTTTAGTGAGTATTTGAGCGTGCCGGTGGCGAACATTTTGCCCGCAGACGGTATTGACCCGCAGGCGGCAGCATTGATTGAACCTTTCGCTATTAGCGCTCATGCGGt                                                                                                                                                                                                                                          <  2:34719/251‑1 (MQ=255)    aaaaaTATTGCTGATCTTAAAAATGGTCAGCAAGTTGCTGTGATCCCTTATGTTGCCTGTCAGCAATGCCCGGCGTCTAAAAGCGGGCGTACCAATTGCTGTGAAAAAATTTCAGTCATTGGCGTGCATCAGGATGGCGGTTTTAGTGAGTATTTGAGCGTGCCGGTGGCGAACATTTTGCCCGCAGACGGTATTGACCCGCAGGCGGCAGCATTGATTGAACCTTTCGCTATTAGCGCTCATGCGGTGCg                                                                                                                                                                                                                                       >  1:178104/1‑251 (MQ=255)              cTGATCTTAAAAATGGTCAGCAAGTTGCTGTGATCCCTTATGTTGCCTGTCAGCAATGCCCGGCGTGTAAAAGCGGGCGTACCAATTGCTGTGAAAAAATTTCAGTCATTGGCGTGCATCAGGATGGCGGTTTTAGTGAGTATTTGAGCGTGCCGGTGGCGAACATTTTGCCCGCAGACGGTATTGACCCGCAGGCGGCAGCATTGATTGAACCTTTCGCTATTAGCGCTCATGCGGTGCGTCGCGCAGcc                                                                                                                                                                                                                             >  1:309879/1‑251 (MQ=255)                 aTCTTAAAAATGGTCAGCAAGTTGCTGTGATCCCTTATGTTGCCTGTCAGCAATGCCCGGCGTGTAAAAGCGGGCGTACCAATTGCTGTGAAAAAATTTCAGTCATTGGCGTGCATCAGGATGGCGGTTTTAGTGAGTATTTGAGCGTGCCGGTGGCGAACATTTTGCCCGCAGACGGTATTGACCCGCAGGCGGCAGCATTGATTGAACCTTTCGCTATTAGCGCTCATGCGGTGCGTCGCGCAGCCAtt                                                                                                                                                                                                                          >  1:342930/1‑251 (MQ=255)                 aTCTTAAAAATGGTCAGCAAGTTGCTGTGATCCCTTATGTTGCCTGTCAGCAATGCCCGGCGTGTAAAAGCGGGCGTACCAATTGCTGTGAAAAAATTTCAGTCATTGGCGTGCATCAGGATGGCGGTTTTAGTGAGTATTTGAGCGTGCCGGTGGCGAACATTTTGCCCGCAGACGGTATTGACCCGCAGGCGGCAGCATTGATTGAACCTTTCGCTATTAGCGCTCATGCGGTGCGTCGCGCAGCCAtt                                                                                                                                                                                                                          >  1:433100/1‑251 (MQ=255)                           tGGTCAGCAAGTTGCTGTGATCCCTTATGTTGCCTGTCAGCAATGCCCGGCGTGTAAAAGCGGGCGTACCAATTGCTGTGAAAAAATTTCAGTCATTGGCGTGCATCAGGATGGCGGTTTTAGGGAGTATTTGAGCGTGCCGGTGGCGAACATTTTGCCCGCAGACGGTATTGACCCGCAGGCGGCAGCATTGATTGCACCTTTCGCTATTAGCGCTCATGCGGGGCGTCGCGCAGCCCATGCCCCCGGCg                                                                                                                                                                                                                >  2:79949/1‑251 (MQ=255)                            ggTCAGCAAGTTGCTGTGATCCCTTATGTTGCCTGTCAGCAATGCCCGGCGTGTAAAAGCGGGCGTACCAATTGCTGTGAAAAAATTTCAGTCATTGGCGTGCATCAGGATGGCGGTTTTAGTGAGTATTTGAGCGTGCCGGTGGCGAACATTTTGCCCGCAGACGGTATTGACCCGCAGGCGGCAGCATTGATTGAACCTTTCGCTATTAGCGCTCATGCGGTGCGTCGCGCAGCCATTGCTCCCGGCgg                                                                                                                                                                                                               >  1:182088/1‑250 (MQ=255)                                                     aTGTTGCCTGTCAGCAATGCCCGGCGTGTAAAAGCGGGCGTACCAATTGCTGTGAAAAAATTTCAGTCATTGGCGTGCATCAGGATGGCGGCTTTAGTGAGTATTTGAGCGTGTCGGTGGCGAACATTTTGCCCGCAGACGGTATTGACCCGCAGGCGGCCGCACTGATTGAACCTTTCCCTATTAGCGCTCATTCGGTGCGTCGCGCAGCCATTGCTCCCGGCGAGCAGGTGCTGGTGGTcggggcgg                                                                                                                                                                                        >  2:429869/1‑249 (MQ=255)                                                      tGTTGCCTGTCAGCAATGCCCGGCGTGTAAAAGCGGGCGTACCAATTGCTGTGAAAAAATTTCAGTCATTGGCGTGCATCAGGATGGCGGTTTTAGTGAGTATTTGAGCGTGCCGGTGGCGAACATTTTGCCCGCAGACGGTATTGACCCGCAGGCGGCAGCATTGATTGAACCTTTCGCTATTAGCGCTCATGCGGTGCGTCGCGCAGCCATTGCTCCCGGCGAGCAGGTGCTGGTGGTcggggcggggg                                                                                                                                                                                     >  1:390825/1‑250 (MQ=255)                                                      tGTTGCCTGTCAGCAATGCCCGGCGTGTAAAAGCGGGCGTACCAATTGCTGTGAAAAAATTTCAGTCATTGGCGTGCATCAGGATGGCGGTTTTAGTGAGTATTTGAGCGTGCCGGGGGCGAACATTTTGCCCGCAGACGGTATTGACCCGCAGGCGGCAGCATTGATTGAACCTTTCGCTATTAGCGCTCCTGCGGTGCGTCGCGCAGCCATTGCTCCCGGCGAGCCGGGGCTGGTGGTcggggcggggg                                                                                                                                                                                     >  2:424902/1‑250 (MQ=255)                                                            cTGTCAGCAATGCCCGGCGTGTAAAAGCGGGCGTACCAATTGCTGTGAAAAAATTTCAGTCATTGGCGTGCATCAGGATGGCGGTTTTAGGGAGTATTTGAGCGTGCCGGTGGCGAACATTTTGCCCGCAGACGGTATTGACCCGCCGGCGGCAGCATTGATTGAACCTTTCGCTATTAGCGCTCATGCGGTGCGTCGCGCAGCCATTGCTCCCGGCGAGCAGGTGCTGGTGGTcggggcgggggcacgat                                                                                                                                                                               >  1:98197/1‑244 (MQ=255)                                                                catcAATGCCCGGCGTGTAAAAGCGGGCGTACCAATTGCTGTGAAAAAATTTCAGTCATTGGCGTGCATCAGGATGGCGGTTTTAGTGAGTATTTGAGCGTGCCGGTGGCGAACATTTTGCCCGCAGACGGTATTGACCCGCAGGCGGCAGCATTGATTGAACCTTTCGCTATTAGCGCTCATGCGGTGCGTCGCGCAGCCATTGCTCCCGGCGAGCAGGTGCTGGTGGTCGGGGCGGGGCCAATCGGTCt                                                                                                                                                                           <  2:399741/248‑1 (MQ=255)                                                                          cGGCGTGTAAAAGCGGGCGTACCAATTGCTGTGAAAAAATTTCAGTCATTGGCGTGCATCAGGATGGCGGTTTTAGTGAGTAGTTGAGCGTGCCGGTGGCGAACATTTGGCCCGCAGACGGTATTGACCCGCAGGCGGCAGCATTGATTGAACCTTTCGCTATTAGCGCTCATGCGGTGCGTCGCGCAGCCATTGCTCCCGGCGAGCAGGTGCTGGTGGTCGGGGCGGGGCCAATCGGTCTGGGCgcggcg                                                                                                                                                                 <  1:103730/251‑1 (MQ=255)                                                                                      gCGGGCGTACCAATTGCTGTGAAAAAATTTCAGTCATTGGCGTGCATCAGGATGGCGGTTTTAGTGAGTATTTGAGCGTGCCGGTGGCGAACATTTTGCCCGCAGACGGTATTGACCCGCAGGCGGCAGCATTGATTGAACCTTTCGCTATTAGCGCTCATGCGGTGCGTCGCGCAGCCATTGCTCCCGGCGAGCAGGTGCTGGTGGTCGGGGCGGGGCCAATCGGTCTGGGCGCGGCGGCAATCGCTaaa                                                                                                                                                     <  1:256866/251‑1 (MQ=255)                                                                                           cGTACCAATTGCGGTGAAAAAATTTCAGTCATTGGCGTGCATCAGGAGGGCGGTTTTAGTGAGTATTTGAGCGTGCCGGTGGCGAACATTTTGCCCGCAGACGGTATTGACCCGCAGGCGGCAGCATTGATTGAACCTTTCGCTATTAGCGCTCATGCGGTGCGTCGCGCAGCCATTGCTCCCGGCGAGCAGGGGCTGGTGGTCGGGGCGGGGCCAATCGGTCTGGGCGCGGCGGCAATCGCTAAAGCCGa                                                                                                                                                <  2:264982/251‑1 (MQ=255)                                                                                                                            ggCGTGCATCAGGATGGCGGTTTTAGTGAGCATTTGAGCGTGCCGGTGGCGAACATTTTGCCCGCAGACGGTATTGCCCCGCAGGCGGCAGCATTGATTGAACCTTTCGCTATTAGCGCTCATGCGGTGCGTCGCGCAGCCATTGCTCCCGGCGAGCAGGTGCTGGCGGGCGGGGCGGGGCCACTCGGTCTGGGCGCGGCCGCCATCGCTAAAGCCGATGGCGCACAGGGGGTGGGGGCgggaaccaatcc                                                                                                               >  1:321322/1‑241 (MQ=255)                                                                                                                               gTGCAGCAGGATGGGGGTTTTAGTGAGTATTTGAGCGTGCCGGTGGCGAACATTTTGCCCGCAGACGGTATTGACCCGCAGGCGGCAGCATTGATTGAACCTTTCGCTATGAGCGCGCATGCGGTGCGTCGCGCAGCCATTGCTCCCGGCGAGCAGGTGCTGGTGGTCGGGGCGGGGCCAATCGGTCTGGGCGCGGCGGCAAGCGCTAAAGCCGATGGCGCACAGGTGGTGGTGGCGGATACCAGTCCGgc                                                                                                            <  2:309879/251‑1 (MQ=255)                                                                                                                                             gtgttttagttgatATTTGAGCGTGGGGGTGGCGAACATTTGTCCCGCAGATGGGATTGGCCCGCAGGGGGGAGGATTGATTGACCCATTCGCTATTAGCGCTCGTTCGGTGCGTCGCGCAGCCATTGCTCCCGGCGAGCAGGTGCTGGTGGTCGGGGCGTGGCCAATCGGTCTGGGCGCGGCGGCAATCGCTAAAGACGATGGCGCACAGGTGGTGGTGTCGGATACCATTCCGGTGCTCCGCGAACAtg                                                                                              <  2:84685/238‑1 (MQ=255)                                                                                                                                                  ttAGTGAGTATTTGGGCGTGCCGGTGGCGAACAGTTGGCCCGCAGACGGTATTGACCCGCAGGCGGCAGCATTGATTGAACCTTTCGCTATTAGCGCTCATGCGGTGCGTCGCGCAGCCATTGCTCCCGGCGAGCAGGTGCTGGTGGTCGGGGCGGGGCCAATCGGTCTGGGCGCGGCGGCAATCGCTAAAGCCGATGGCGCACAGGTGGTGGTGGCGGATACCAGTCCGGCGCGCCGTGAACACGTGGc                                                                                          <  2:314764/250‑1 (MQ=255)                                                                                                                                                   tAGTGAGTATTTGGGCGTGCCGGTGGCGAACATTTTGCCCGCAGACGGTATTGACCCGCAGGCGGCAGCATTGATTGAACCTTTCGCTATTAGCGCTCATGCGGTGCGTCGCGCAGCCATTGCTCCCGGCGAGCAGGTGCTGGTGGTCGGGGCGGGGCCAATCGGTCTGGGCGCGGCGGCAATCGCTAAAGCCGATGGCGCACAGGTGGTGGTGGCGGATACCAGTCCGGCGCGCCGTGAACATGTGGCa                                                                                         <  2:65512/250‑1 (MQ=255)                                                                                                                                                             ttGAGCGTGCCGGGGGCGAACATTTTGCCCGCAGACGGTAGTGACCCGCAGGCGGCAGCATTGATTGAACCTTGCGCTATTAGCGCTCATGCGGTGCGTCGCGCAGCCATTGCTCCCGGCGAGCAGGTGCTGGTGGTCGGGGCGGGGCCAATCGGTCTGGGCGCGGCGGCAATCGCTAAAGCCGATGGCGCACAGGTGGTGGTGGCGGATACCAGTCCGGCGCGCCGTGAACATGTGGCAACGCGTCTgg                                                                               <  2:49775/250‑1 (MQ=255)                                                                                                                                                                                                 ggTATTGACCCGCAGGCGGCAGCATTGATTGAACCTTTCGCTATTAGCGCTCATGCGGTGCGTCGCGCAGCCATTGCTCCCGGCGAGCAGGTGCTGGTGGTCGGGGCGGGGCCAATCGGGCCGGGCGCGGCGGCAATCGCTAAAGCCGATGGCGCACCGGTGGTGGTGGCGGATACCAGTCCGGCGCGCCGTGAACATGTGGCAACGCGTCTGGAATTACCTTTACTGGACCCGTCAGCCGAAGATTTTgg                                          >  1:401808/1‑250 (MQ=255)                                                                                                                                                                                                  gTATTGACCCGCAGGCGGCAGCATTGATTGAACCTTTCGCTATTAGCGCTCATGCGGTGCGTCGCGCAGCCATTGCTCCCGGCGAGCAGGTGCTGGTGGTCGGGGCGGGGCCAATCGGTCTGGGCGCGGCGGCAATCGCTAAAGCCGATGGCGCACAGGTGGTGGTGGCGGATACCAGTCCGGCGCGCCGTGAACATGTGGCAACGCGTCTGGAATTACCTTTACTGGACCCGTCAGCCGAAGATTTTGAc                                         <  1:230362/251‑1 (MQ=255)                                                                                                                                                                                                            gCAGGCGGCAGCATTGATTGAACCTTTCGCTATTAGCGCTCATGCGGTGCGTCGCGCAGCCATTGCTCCCGGCGAGCAGGTGCTGGTGGGCGGGGCGGGGCCAATCGGTCTGGGCGCGGCGGCAATCGCTAAAGCCGATGGCGCACAGGTGGTGGTGGCGGATACCAGTCCGGCGCGCCGTGAACATGTGGCAACGCGTCTGGAATTACCTTTACTGGACCCGTCAGCCGAAGATTTTGACGCGCAGCTAc                               <  2:52679/251‑1 (MQ=255)                                                                                                                                                                                                            gCAGGCGGCAGCATGGATTGAACCTTGCGCTATTAGCGCTCATGCGTTGCGTCGCGCAGCCTTTGCTCCCGGCGAGCAGGTGCTGGTGGTGTGGGCGGGGCCAATCGGTCTGGGCGCGGCGGCAATCGCTAAAGCCGATGGCGCACAGGTGGTGGTGGCGGATACCAGTCCGGCGCGCCGTGAACATGTGGCAACGCGTCTGGAATTACCTTTACTGGACCCGTCAGCCGAAGATTTTGACGCGCAGCTAc                               <  2:210738/251‑1 (MQ=255)                                                                                                                                                                                                               ggcggcAGCATTGATTGAACCTTTCGCTATTAGCGCTCATGCGGTGCGTCGCGCAGCCATTGCTCCCGGCGAGCAGGTGCTGGTGGTCGGGGCGGGGCCAATCGGGCTGGGCGCGGCGGCAATCGCTAAAGCCGATGGCGCACAGGGGGTGGCGGCGGAGACCAGTCCGGCGCGCCGCGAACATGTGGCAACGCGTCCGGAATTACCTTTACTGGACCCGTCAGCCGAAGATTTTGACGCGCAGCTACggg                            >  1:108198/1‑251 (MQ=255)                                                                                                                                                                                                                      gcaTTGATTGAACCTTTCGCTATTAGCGCTCATGCGGTGCGTCGCGCAGCCATTGCTCCCGGCGAGCAGGTGCTGGTGGTCGGGGCGGGGCCAATAGGGCTGGGCGCGGCGGCAAACGCTAAAGCCGATGGCGCACAGGAGGGGGTGGCGGAGACCAGTCCGGAGCGCCGGGGACAAGTGGGAACGCGTGTGGGAATACCGTAACTGGGCCCGTAGGCCGCAGAATTTGTCGCCAAGCTACGGGTGCAGtt                     >  2:71910/1‑251 (MQ=255)                                                                                                                                                                                                                       caTTGATTGAACCTTTCGCTATTAGCGCTCATGCGGTGCGTCGCGCAGCCATTGCTCCCGGCGAGCAGGTGCTGGTGGTCGGGGCGGGGCCAATCGGTCTGGGCGCGGCGGCCATCGCTAAAGGCGATGGCGCACAGGTGGGGGGGGCGGGTACCAGGCCGGCGCGCCGGGAACAAGTGGCAACGCGTCTGGGATTACCCTTACTGGACCCGGCAGCCGAAGATTTTGTCGCGCATCTACgggggccggtt                    >  2:307777/1‑243 (MQ=255)                                                                                                                                                                                                                               gaacctgtagttagtAGCGCTCATTCGGTGCGTCGCGTAGCCGTTTCTCCCGGCGAGCAGGGGCTGGTGGTCGGGGCGGAGCCCAGCGGTCTGGGAGGGGCGGGAATCGCTAGAGCCGATGGCGCACAGGTGGTGGTGGCGGATACCAGTCCGGCGCGCCGTGACCATGTGGCAACGCGTGTGTAATTACCTTTTCTTGACGCGTCAGCCGAAGATTGTGACGCGCAGCAACGGGCGCAGTTTGTTGGttg            <  2:66483/237‑2 (MQ=255)                                                                                                                                                                                                                                     ttCGCTATTAGCGCTCATGCGGTGCGTCGCGCAGCCATTGCTCCCAGCGAGCAGGTGCTGGTGGTCGGGGCGGGGCCAATCGGTCTGGGCGCGGGGGCAATCGCTAAAGCCGATGGGGCACAGGGGGGGGTGGCGGAGACCAGGCCGGGGCGCAGGGGACATGTGGGAAAGGGGCTGGAATTACCTTTACTGGAGCCGCCAGCCGAAGAGTTTGACGGGGAGCTACGGGCGGAGTTTGGGGGTTCGcgggg      >  1:121672/1‑247 (MQ=255)                                                                                                                                                                                                                                          tATTAGCGCTCATGCGGTGCGTCGCGCAGCCATTGCTCCCGGCGAGCAGGTGCTGGTGGTCGGGGCGGGGCCAATCGGTCTGGGCGCGGCGGCAATCGCTAAAGCCGATGGCGCACAGGGGGTGGGGGCGGGTACCAGTCCGGCGCGCCGTGAACAAGTGGCAACGCGGCTGGAAATACCTTTTCTGGGCCCGTCAGCCCAAGATTTTTACGCGCAGCTACGGGCGCCGTTTGGGGGGTCGCTGgcgccg  >  2:111528/1‑248 (MQ=255)                                                                                                                                                                                                                                                      |                                                                                                                                                                                                                                              GGTAAAAATATTGCTGATCTTAAAAATGGTCAGCAAGTTGCTGTGATCCCTTATGTTGCCTGTCAGCAATGCCCGGCGTGTAAAAGCGGGCGTACCAATTGCTGTGAAAAAATTTCAGTCATTGGCGTGCATCAGGATGGCGGTTTTAGTGAGTATTTGAGCGTGCCGGTGGCGAACATTTTGCCCGCAGACGGTATTGACCCGCAGGCGGCAGCATTGATTGAACCTTTCGCTATTAGCGCTCATGCGGTGCGTCGCGCAGCCATTGCTCCCGGCGAGCAGGTGCTGGTGGTCGGGGCGGGGCCAATCGGTCTGGGCGCGGCGGCAATCGCTAAAGCCGATGGCGCACAGGTGGTGGTGGCGGATACCAGTCCGGCGCGCCGTGAACATGTGGCAACGCGTCTGGAATTACCTTTACTGGACCCGTCAGCCGAAGATTTTGACGCGCAGCTACGGGCGCAGTTTGGTGGTTCGCTGGCGCAG  >  NC_000913/4596203‑4596685

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.