mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.39.0
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,296,268 | 0 | T | C | 40.0% | 6.3 / 12.2 | 15 | intergenic (+474/+168) | gltP/yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| * | NC_000913 | 119,396 | 0 | C | T | 35.4% | 66.5 / 18.9 | 48 | S39F (TCT→TTT) | ampE | protein AmpE |
| * | NC_000913 | 3,731,724 | 0 | G | A | 33.3% | 50.3 / 11.6 | 36 | L198L (TTG→TTA) | xylF | xylose ABC transporter periplasmic binding protein |
| * | NC_000913 | 560,932 | 0 | A | T | 28.6% | 57.6 / 10.7 | 35 | L412F (TTA→TTT) | sfmD | putative fimbrial usher protein SfmD |
| * | NC_000913 | 3,759,227 | 0 | A | T | 26.8% | 120.4 / 11.5 | 57 | V212E (GTA→GAA) | selB | selenocysteyl‑tRNA‑specific translation elongation factor |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 4542682 = | 30 (0.650) | 3 (0.070) | 3/470 | 4.0 | 9.2% | intergenic (+49/‑433) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit |
| ? | NC_000913 | 4542996 = | 30 (0.670) | intergenic (+363/‑119) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit | |||||
| * | ? | NC_000913 | 961784 = | 57 (1.230) | 3 (0.070) | 3/484 | 4.0 | 6.4% | coding (584/684 nt) | cmk | cytidylate kinase |
| ? | NC_000913 | = 4134337 | 31 (0.680) | coding (503/2181 nt) | katG | catalase/hydroperoxidase HPI | |||||
| * | ? | NC_000913 | = 33796 | 49 (1.060) | 3 (0.070) | 3/486 | 4.1 | 5.8% | coding (2980/3222 nt) | carB | carbamoyl‑phosphate synthetase large subunit |
| ? | NC_000913 | 227432 = | NA (NA) | noncoding (1674/2904 nt) | rrlH | 23S ribosomal RNA | |||||