New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	961784 =	57 (1.230)	3 (0.070)	3/484	4.0	6.4%	coding (584/684 nt)	cmk	cytidylate kinase
	?	NC_000913	= 4134337	31 (0.680)					coding (503/2181 nt)	katG	catalase/hydroperoxidase HPI
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GTTTAACATACCCGCTGTCATTCCATTGCAACGGGGGTACTGCAAATTCGGTCGCTTATGCGAGAGCCAATTTCTGGCGCGCGTATTGTAGCGCTTTTTCAATCACTTGCTCAATGCTTAAGGTGGTGGAATCCAACACTAAAGCATCGGCTGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/961939‑961784 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgTTACCCGCGAGGATAAACAGGTCGGCCCAGGAGATTTTCTGACCATATTTCTGTTTGATTGGCCACAACAGGCGACGCGCTTTATCGAGGCTTACGTTATCCGGCCAGGAGTTCAGCGGTGCAAAACGTTGCTGACCACGACCCGCGCCACCGCGTCCATCGATTGAACGGTAAGTCCCCGCGCCGTGCCAGGCCATACGAATAAACAGACCGGCGTAACTGCCCCAGTCGGCTGGCCACCACGGTTG  <  NC_000913/4134337‑4134090                                                                                                                                                                                                                                                                                                                                                                                                                      GTTTAACATACCCGCTGTCATTCCATTGCAACGGGGGTACTGCAAATTCGGTCGCTTATGCGAGAGCCAATTTCTGGCGCGCGTATTGTAGCGCTTTTTCAATCACTTGCTCAATGCTTAAGGTGGTGGAATCCAACACTAAAGCATCGGCTGCCGTTACCCGCGAGGATAAACAGGTCGGCCCAGGAGATTTTCTGACCATATTTCTGTTTGATTGGCCACAACAGGCGACGCGCTTTATCGAGGCTTAC                                                                                                                                                           >  2:55843/1‑251                                                                                     ATTGTAGCGCTTTTTCAATCACTTGCTCAATGCTTAAGGTGGTGGAATCCAACACTAAAGCATCGGCTGCCGTTACCCGCGAGGATAAACAGGTCGGCCCAGGAGATTTTCTGACCATATTTCTGTTTGATTGGCCACAACAGGCGACGCGCTTTATCGAGGCTTACGTTATCCGGCCAGGAGTTCAGCGGTGCAAAACGGTGCGGACCACGACCCGCGCCACCGCGTCCATCGATTGAACGGTAAGTCCC                                                                       <  1:55843/251‑1                                                                                                                                                          CCGTTACCCGCGAGGATAAACAGGTCGGCCCAGGAGATTTTCTGACCATATTGCTGTTTGATTGGCCACAACAGGCGACGCGCTTTATCGAGGCTTACGTTATCCGGCCAGGAGTTCAGCGGTGCAAAACGTTGCTGACCACGACCCGCGCCACCGCGTCCATCGATTGAACGGTAAGTCCCCGCGCCGTGCCAGGCCATACGAATAAACAGACCGGCGTAACTGCCCCAGTCGGCTGGCCACCACGGTTG  <  2:197460/251‑1                                                                                                                                                                                                                                                                                                                                                                                                                      GTTTAACATACCCGCTGTCATTCCATTGCAACGGGGGTACTGCAAATTCGGTCGCTTATGCGAGAGCCAATTTCTGGCGCGCGTATTGTAGCGCTTTTTCAATCACTTGCTCAATGCTTAAGGTGGTGGAATCCAACACTAAAGCATCGGCTGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/961939‑961784 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgTTACCCGCGAGGATAAACAGGTCGGCCCAGGAGATTTTCTGACCATATTTCTGTTTGATTGGCCACAACAGGCGACGCGCTTTATCGAGGCTTACGTTATCCGGCCAGGAGTTCAGCGGTGCAAAACGTTGCTGACCACGACCCGCGCCACCGCGTCCATCGATTGAACGGTAAGTCCCCGCGCCGTGCCAGGCCATACGAATAAACAGACCGGCGTAACTGCCCCAGTCGGCTGGCCACCACGGTTG  <  NC_000913/4134337‑4134090

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.