breseq  version 0.39.0   mutation predictions | marginal predictions | summary statistics | genome diff | command line log

Marginal read alignment evidence
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,228,275	0	T	C	59.3%	‑3.2 / 16.5	27	intergenic (‑1005/‑707)	yohF/yohP	putative oxidoreductase YohF/putative membrane protein YohP
*	NC_000913	523,335	0	T	G	58.8%	2.7 / 12.2	17	G25G (GGT→GGG)	rhsD	protein RhsD
*	NC_000913	1,554,000	0	T	G	52.2%	3.5 / 14.4	23	Y557S (TAC→TCC)	maeA	malate dehydrogenase (oxaloacetate‑decarboxylating)
*	NC_000913	599,576	0	T	G	50.0%	3.3 / 10.3	24	V288G (GTG→GGG)	cusA	copper/silver export system RND permease
*	NC_000913	904,961	0	T	G	40.0%	19.9 / 10.7	25	C17G (TGT→GGT)	amiD	N‑acetylmuramoyl‑L‑alanine amidase D
*	NC_000913	734,682	0	A	G	34.3%	41.5 / 19.4	41	intergenic (+580/‑968)	ybfB/ybfC	uncharacterized protein YbfB/uncharacterized protein YbfC
*	NC_000913	3,492,890	0	T	G	33.3%	40.2 / 10.0	36	V108G (GTG→GGG)	tsgA	putative transporter TsgA
*	NC_000913	734,636	0	C	T	32.4%	38.9 / 21.0	37	intergenic (+534/‑1014)	ybfB/ybfC	uncharacterized protein YbfB/uncharacterized protein YbfC
*	NC_000913	731,250	0	T	C	25.5%	94.0 / 24.7	51	R556R (CGT→CGC)	rhsC	rhs element protein RhsC
*	NC_000913	731,260	0	G	A	24.0%	96.1 / 24.8	50	V560M (GTG→ATG)	rhsC	rhs element protein RhsC
*	NC_000913	366,526	0	T	G	23.8%	1143.3 / 101.1	530	T329P (ACC→CCC)	lacI	DNA‑binding transcriptional repressor LacI
*	NC_000913	732,765	0	C	T	23.8%	57.4 / 20.9	43	T1061T (ACC→ACT)	rhsC	rhs element protein RhsC
*	NC_000913	731,253	0	T	C	22.4%	104.1 / 22.1	51	F557F (TTT→TTC)	rhsC	rhs element protein RhsC
*	NC_000913	731,256	0	T	G	22.0%	106.1 / 22.5	51	G558G (GGT→GGG)	rhsC	rhs element protein RhsC