| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,554,000 | 0 | T | G | 52.2% | 3.5 / 14.4 | 23 | Y557S (TAC→TCC) | maeA | malate dehydrogenase (oxaloacetate‑decarboxylating) |
| Reads supporting (aligned to +/- strand): ref base T (1/10); new base G (12/0); total (13/10) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 9.61e-06 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.57e-03 | |||||||||||
| Rejected as consensus: E-value score below prediction cutoff. | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
CAGGGCTTCGCCATGTTTCAGTGAGCGCAGTGTTTTATACGTAACGTCAACATGATGATCCTTCGTAACAACTGCAGCCTTCATAGTTCCTCCTTTTCGGATGATGTTCTGCATAGCAGGTGAGGCAAATGAGATTTATTCGCCACTACCCAGTATGGATGAGATCTGAAAAAGGGAGAGGGAAATAGCCCGGTAGCCTTCACTACCGGGCGCAGGCTTAGATGGAGGTACGGCGGTAGTCGCGGTATTCGGCTTGCCAGAAATTATCGTCAATGGCCTGTTGCAGGGCTTCGGCAGAGGTTTTCACCGCCACGCCTTGCTGCTGCGCCATTTTGCCAACCGCAAACGCAATTGCGCGGGAGACTTTCTGAATATCTTTCAGTTCCGGCAGTACCATACCTTCGCCGTTCAGCACCAATGGTGAATACTGCGCCAGCGTTTCACTTGCCGACATCAGCATCTCATCG > NC_000913/1553755‑1554221 | cagGGCTTCGCCATGTTTCAGTGAGCGCAGTGTTTTATACGTAACGTCAACATGATGATCCTTCGTAACAACTGCAGCCTTCATAGTTCCTCCTTTTCGGATGATGTTCTGCATAGCAGGTGAGGCAAATGAGATTTATTCGCCACTACCCAGTATGGATGAGATCTGAAAAAGGGAGAGGGAAATAGCCCGGTAGCCTTCACTACCGGGCGCAGGCTTAGATGGAGGTACGGCGGTAGTTGCGGGATTCg > 1:169205/1‑251 (MQ=255) aTGTTTCAGTGAGCGCAGTGTTTTATACGTAACGTCAACATGATGATCCTTCGTACCAACTGCAGCCTTCATAGTTCCTCCTTTTCGGATGATGTTCTGCATAGCAGGTGAGGCAAATGAGATTTATTCGCCACTACCCAGTATGGATGAGATCTGAAAAAGGGAGAGGGAAATAGCCCGGTAGCCTTCACTACCGGGCGCAGGCTTAGATGGAGGTACGGCGGTCGTCGCGGTAATCGGGTTTCCAgca > 2:119446/1‑248 (MQ=255) gAGCGCAGTGTTTTATACGTAACGTCAACATGATGATCCTTCGTAACAACTGCAGCCTTCATAGTTCCTCCTTTTCGGATGATGTTCTGCATAGCAGGTGAGGCAAATGAGATTTATTCGCCACTACCCAGTATGGATGAGATCTGAAAAAGGGAGAGGGAAATAGCCCGGTAGCCTTCACTACCGGGCGCAGGCTTAGATGGAGGTACGGCGGTAGTCGCGGTATTCGGCTTGCCAGAAATTATCGTCa < 2:104343/250‑1 (MQ=255) cAGTGTTTTATACGTAACGTCAACATGATGATCCTTCGTAACAACTGCAGCCTTCATAGTTCCTCCTTTTCGGATGATGTTCTGCATAGCAGGTGAGGCAAATGAGATTTATTCGCCACTACCCAGTATGGATGAGATCTGAAAAAGGGAGAGGGAAATAGCCCGGTAGCCTTCACTACCGGGCGCAGGCTTAGATGGAGGTACGGCGGTAGTCGCGGGATTCGGCTTGCCAGAAATTATAGTCAATGGcc > 1:280554/1‑251 (MQ=255) tgtTTTATAAGTAACGTCAACATGATGATCCTTCGTAACAACTGCAGCCTTCATAGTTCCTCCTTTTCGGATGATGTTCTGCATAGCAGGTGAGGCAAATGAGATTTATTCGCCACTACCCAGTATGGATGAGATCTGAAAAAGGGAGAGGGAAATAGCCCGGTAGCCTTCACTACCGGGCGCAGGCTTAGATGGAGGTACGGCGGTAGCCGCGGGATTCGGGTTGCCCGGACATATAGTCAATGGCCTgg > 2:143083/1‑250 (MQ=255) tataCGTAACGTCAACATGATGATCCTTCGTAACAACTGCAGCCTTCATAGTTCCTCCTTTTCGGATGATGTTCTGCATAGCAGGTGAGGCAAATGAGATTTATTCGCCACTACCCAGTATGGATGAGATCTGAAAAAGGGAGAGGGAAATAGCCCGGTAGCCTTCACTACCGGGCGCAGGCTTAGATGGAGGTACGGCGGTAGTCGCGGTATTCGGCTTGCCAGAAATTATCGTCAATGGCCTGTTGCa < 1:238735/250‑1 (MQ=255) aCGTCAACATGATGATCCTTCGTAACAACTGCAGCCTTCATAGTTCCTCCTTTTCGGCTGATGTTCTGCATAGCAGGTGAGGCAAATGAGATTTATTCGCCACTACCCAGTATGGATGTGATCTGAAAAAGGGAGAGGGAAATAGCCCGGTAGCCTTCACTACCGGGCGCAGGCTTAGATGGAGGTACGGCGGTAGTCGCGGGATTCGGCTTGCCCGAAATTATCGTCAATGGCCTGTTGGAGGGCTTCgg > 1:145213/1‑251 (MQ=255) aacaacTGCAGCCTTCATAGTTCCTCCTTTTCGGATGATGTTCTGCATAGCAGGTGAGGCAAATGAGATTTATTCGCCACTACCCAGTATGGATGAGATCTGAAAAAGGGAGAGGGAAATAGCCCGGTAGCCTTCACTACCGGGCGCAGGCTTAGATGGAGGTACGGCGGTAGTCGCGGGATTCGGCTTTCCAGAAATTATCGTCAATGGCCTGGTGCAGGGCTTCGGCCGAGGGTTTCAccgccccgccc > 1:171434/1‑250 (MQ=255) caacTGCAGCCTTCATAGATACTCCTTTTCGGATGATGTTCTGCATAGCAGGTGAGGCAACTGAGATTTATTCGCCACTACCCAGTATGGATGAGATCTGAAAAAGGGAGAGGGAAATAGCCCGGTAGCCTTCACTACCGGGCGCAGGCTTAGATGGAGGTACGGCGGTAGGCGCGGGATTCCGGTTGGCAGAAAATATTGGCAATTGCCTGTTGCCGGGATTCGGCCGAGGGTTTCACCCCCACGccctg > 1:99627/1‑248 (MQ=255) acTGCAGCCTTCATAGTTCCTCCTTTTCGGATGATGTTCTGCATAGCAGGTGAGGCAAATGAGATTTATTCGCCACTACCCAGTATGGATGAGATCTGAAAAAGGGAGAGGGAACTAGCCCGGTAGCCTTCACTACCGGGCGCAGGCTTAGATGGAGGTACGGCGGGAGTCGCGGGATTCGGCTTGCCAGAAATTATCGTCCATGGCCCGTTGCCGGGCTTCCGCCGAGGTTTTTACCGCCAcccccttct > 2:296999/1‑243 (MQ=255) aGTTCCTCCTTTTCGGATGATGTTCTGCATAGCAGGTGAGGCAAATGAGATTTATTCGCCACTACCCAGTATGGATGAGATCTGAAAAAGGGAGAGGGAAATAGCCCGGTAGCCTTCACTACCGGGCGCAGGCTTAGATGGAGGTACGGCGGTAGTCGCGGGATTTGGCTTGCCAGAAATTATCGTCAATGGCCTGTTGCAGGGCTTCGGCAGAGGTTTTCACCGCCACGCCTTGCTGCTGCGCCCttttt > 1:180326/1‑250 (MQ=255) aGTTCCTCCTTTTCGGATGATGTTCTGCATAGCAGGTGAGGCAAATGAGATTTATTCGCCACTACCCAGTATGGATGAGATCTGAAAAAGGGAGAGGGAAATAGCCCGGTAGCCTTCACTACCGGGCGCAGGCTTAGATGGAGGTACGGCGGTAGTCGCGGGATTCGGCTTGCCAGAAATTATCGTCAATGGCCTGTTGCAGGGCTTCGGCCGAGGTTTTCACCGCCACGCCTTGCTGCTGCGCCCttttt > 1:39309/1‑250 (MQ=255) cgggggAGGAAAATGAGATTTATTCGCCACTCCCCAGTATGGATGAGATCTGAAAAAGGGAGAGGGAAATAGCCCGGTAGCCTTCACTCCCGGGCGCAGGCTTAGATGGAGGTACGGCGGTAGTCGCGGTATTCGGCTTGCCAGAAATTATCGTCAAGGGCCTGTGGCAGGGCTTCGGCAGAGGTTTTCACCGCCACGCCTTGCTGCTGCGCCATTTTGCCAACCGCAAACGCAATTGCGCGGGAGACttt < 2:209961/246‑1 (MQ=255) agaTCTGAAAAAGGGAGAGGGAAAGAGCCCGGTAGCCTTCACTCCCGGGCGCAGGCTTAGATGGAGGTACGGCGGTAGTCGCGTTATTCGGCTGGCCAGAAATTACCGTCAATGGCCGTTTGCAGGGCTTCGGAAGAGGTTTTCACCGCCACGCCTTGCTGCTGCGCCATTTTGCCAACCGCAAACGCAATTGCGCGGGAGACTTTCTGAATATCTTTCAGTTCCGGTAGTACCATACCTTCGCCGTTCAg < 2:106246/251‑1 (MQ=255) aaaaGGGGGAGGAAAATTGCCCGGTAGCCTTCACTCCCGGGCGCAGGCTGAGATGGAGGTACGGCGGAAGTCGCGGTGTTCGGCTTGCCAGAAATTATCGTCAATGGCCTGTTGCAGGTCTTCGGGAGAGGTTTTCACCGCCACGCCTTGCTGCTGCGCCATTGTGCCAACCGCAAACGCAATTGCGCGGGATACTTTCTGAATAGCTTTCAGTTCCGGCAGTACCATACCTTCGCCGTTCAGCACCAATg < 1:41872/251‑1 (MQ=255) aaaaGGGAGAGGGAAATAGCCCGGTAGCCTTCACTACCGGGCGCAGGCTTAGATGGAGGTACGGCGGTAGTCGCGGGATTCGGCTTGCCAGAAATTATCGTCAATGGCCTGTTGCAGGGCTTCGGCAGAGGGTTTCACCGCCACGCCTTGCTGCTGCGCCATTTTGCCAACCGCCAACGCAATTGCGCGGGGGACTTTCTGAATATCTTTCAGTTCCGGCAGGACCATACCTTCGCCGTTCAGCACCAATg > 1:152637/1‑251 (MQ=255) ggAGGGGGAAATAGCCGGGTAGCCTCCACTCCCGGGCGCAGGCTTAGATGGAGGTACGGCGGTAGTCGGGGTATTCGGCTTGCAAGAAATTATCGTCAAGGGCCTGGTGCGGGGCTTCGGCAGAGGTTTTCACCGCCACGCCTTGCTGCTGCGCCATTTTGCCAACCGCAAACGCAATTGCGCGGGAGACTTTCTGAATATCTTTCAGTTCCGGCAGTACCATACCTTCGCCGTTCAGCACCAATGGTGaa < 2:180326/251‑1 (MQ=255) ggAGAGGGAAATAGCCGGGTGCCCTTCCCTCCGGGGCGCAGGTTAAGATGGGGGTAGGGCGGTATTCGGGGTATTTGGTTTGCCAGAAATTATCTTCAATGGCCTGTTGAAGGGTTTCGGCAGAGGTTTTCACCGCCACGCCTTGCTGCTGCGCCATTTTGCCAACCGCAAACGCAATTGCGCGGGAGACTTTCTGAATATCTTGCAGTTCCGGCAGTGCCATACCTTCGCCGTTCAGCACCAATGGTGaa < 1:119446/251‑1 (MQ=255) gagGGAAATAGCCCGGTAGCCTTCACTACCGGGCGCAGGCTTAGATGGAGGTACGGCGGTAGTCGCGGTATTCGGCTTGCCAGAAATTATCGTCAATGGCCTGTTGCa < 2:321263/108‑1 (MQ=255) gagGGAAATAGCCCGGTAGCCTTCACTACCGGGCGCAGGCTTAGATGGAGGTACGGCGGTAGTCGCGGGATTCGGCTTGCCAGAAATTATTGTTAATGGCCTGGTGcc > 1:321263/1‑107 (MQ=255) aGCCTTCACTCCCGGGCGCAGGCTTAGATGGGGGTACGGCGGTAGTCGCGGTATTCGGCTTGCCAGAAATTATCGTCAATGGCCTGTTGCAGGGCTTCGGCAGAGGTTTTCACCGCCACGCCTTGCTGCTGCGCCATTTTGCCAACCGCAAACGCAATTGCGCGGGAGACTTTCTGAATATCGTTCAGTTCCGGCAGTACCATACCTTCGCCGTTCAGCACCAATGGTGAATACTGCGCCAGCGTTTCACt < 1:196630/251‑1 (MQ=255) ttCACTACCGGGCGCAGGCTTAGATGGAGGTACGGCGGTAGTCGCGGGATTCGGCTTGCCAGAAATTATCGTCAATGGCCTGTTGCAGGGCTTCGGCAGAGGTTTTTACCGCCACGCCTTGCTGCTGCGCCATTTTGCCAACCGCAAACGCAATTTCGCGGGAGACTTTCTGAATATCTTTCAGTTCCGGCAGTACCCTACCTTCGCCGTTCAGCACCAATGGTGAATACCGCGCCAGCGTTTCACTTGcc > 1:191285/1‑251 (MQ=255) tAGAGGGAGGAACGGGGGTAGTCGCGGTATTCGGCTTGCCAGAAATTATCGTCAAGGGCCTGTTGCAGGGCTTCGGCAGAGGTTTTCACCGCCACGCCTTGCTGCTGCGCCATTTTGCCAACCGCAAACGCAATTGCGCGGGAGACTTTCTGAATATCTTTCAGTTCCGGCAGTACCATACCTTCGCCGTTCAGCACCAATGGTGAATACTGCGCCAGCGTTTCACTTGCCGACATCAGCATCTCATCg < 1:298482/249‑1 (MQ=255) | CAGGGCTTCGCCATGTTTCAGTGAGCGCAGTGTTTTATACGTAACGTCAACATGATGATCCTTCGTAACAACTGCAGCCTTCATAGTTCCTCCTTTTCGGATGATGTTCTGCATAGCAGGTGAGGCAAATGAGATTTATTCGCCACTACCCAGTATGGATGAGATCTGAAAAAGGGAGAGGGAAATAGCCCGGTAGCCTTCACTACCGGGCGCAGGCTTAGATGGAGGTACGGCGGTAGTCGCGGTATTCGGCTTGCCAGAAATTATCGTCAATGGCCTGTTGCAGGGCTTCGGCAGAGGTTTTCACCGCCACGCCTTGCTGCTGCGCCATTTTGCCAACCGCAAACGCAATTGCGCGGGAGACTTTCTGAATATCTTTCAGTTCCGGCAGTACCATACCTTCGCCGTTCAGCACCAATGGTGAATACTGCGCCAGCGTTTCACTTGCCGACATCAGCATCTCATCG > NC_000913/1553755‑1554221 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |