mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.39.0
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,728,118 | 1 | . | C | 73.1% | 43.1 / 14.7 | 26 | coding (1254/1455 nt) | xylB | xylulokinase |
| * | NC_000913 | 2,173,363 | 0 | C | . | 68.8% | 16.1 / 19.0 | 17 | intergenic (‑490/+919) | gatD/gatB | galactitol‑1‑phosphate 5‑dehydrogenase/galactitol‑specific PTS enzyme IIB component |
| * | NC_000913 | 4,602,552 | 0 | C | T | 65.4% | 17.0 / 19.5 | 26 | E103K (GAG→AAG) | yjjP | putative succinate exporter YjjP |
| * | NC_000913 | 2,173,364 | 0 | C | . | 64.7% | 15.5 / 19.6 | 17 | intergenic (‑491/+918) | gatD/gatB | galactitol‑1‑phosphate 5‑dehydrogenase/galactitol‑specific PTS enzyme IIB component |
| * | NC_000913 | 1,801,591 | 0 | T | C | 64.3% | 26.7 / 23.5 | 28 | Y327C (TAC→TGC) | thrS | threonine‑‑tRNA ligase |
| * | NC_000913 | 1,594,132 | 0 | C | . | 54.5% | 12.4 / 20.0 | 11 | intergenic (‑1690/+4485) | hipB/lsrK | antitoxin/DNA‑binding transcriptional repressor HipB/autoinducer‑2 kinase |
| * | NC_000913 | 1,732,701 | 0 | T | C | 53.3% | ‑2.4 / 34.4 | 30 | A1205A (GCT→GCC) | lhr | ATP‑dependent helicase Lhr |
| * | NC_000913 | 4,614,395 | 0 | T | C | 52.4% | ‑2.4 / 24.2 | 21 | intergenic (+135/+285) | yjjV/yjjW | putative metal‑dependent hydrolase YjjV/putative glycyl‑radical enzyme activating enzyme YjjW |
| * | NC_000913 | 1,245,793 | 0 | C | T | 47.4% | 1.4 / 20.3 | 19 | M528I (ATG→ATA) | treA | periplasmic trehalase |
| * | NC_000913 | 4,606,330 | 1 | . | G | 46.2% | ‑4.8 / 19.2 | 13 | noncoding (72/87 nt) | leuQ | tRNA‑Leu |
| * | NC_000913 | 4,614,402 | 0 | C | T | 45.0% | 2.3 / 19.3 | 20 | intergenic (+142/+278) | yjjV/yjjW | putative metal‑dependent hydrolase YjjV/putative glycyl‑radical enzyme activating enzyme YjjW |
| * | NC_000913 | 1,347,778 | 0 | C | T | 41.7% | 5.8 / 22.3 | 24 | A379T (GCC→ACC) | rnb | RNase II |
| * | NC_000913 | 2,905,219 | 1 | . | C | 40.0% | 5.6 / 21.7 | 15 | coding (200/672 nt) | queE | putative 7‑carboxy‑7‑deazaguanine synthase QueE |
| * | NC_000913 | 64,604 | 0 | C | T | 37.5% | 7.5 / 31.0 | 34 | E393K (GAA→AAA) | polB | DNA polymerase II |
| * | NC_000913 | 2,173,360 | 0 | A | . | 35.3% | 30.0 / 10.2 | 17 | intergenic (‑487/+922) | gatD/gatB | galactitol‑1‑phosphate 5‑dehydrogenase/galactitol‑specific PTS enzyme IIB component |
| * | NC_000913 | 377,407 | 0 | C | T | 31.0% | 32.9 / 16.1 | 30 | intergenic (+96/+128) | yaiL/frmB | DUF2058 domain‑containing protein YaiL/S‑formylglutathione hydrolase FrmB |
| * | NC_000913 | 377,402 | 0 | G | A | 30.0% | 35.8 / 16.3 | 30 | intergenic (+91/+133) | yaiL/frmB | DUF2058 domain‑containing protein YaiL/S‑formylglutathione hydrolase FrmB |
| * | NC_000913 | 377,423 | 0 | G | T | 25.0% | 32.2 / 13.5 | 29 | intergenic (+112/+112) | yaiL/frmB | DUF2058 domain‑containing protein YaiL/S‑formylglutathione hydrolase FrmB |
| * | NC_000913 | 3,051,656 | 0 | T | C | 21.7% | 94.5 / 17.4 | 48 | H221R (CAT→CGT) | ubiI | 2‑octaprenylphenol 6‑hydroxylase |
| * | NC_000913 | 377,431 | 1 | . | T | 20.0% | 59.9 / 14.8 | 25 | intergenic (+120/+104) | yaiL/frmB | DUF2058 domain‑containing protein YaiL/S‑formylglutathione hydrolase FrmB |