mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.39.0
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 27 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,509,586 | 0 | A | C | 64.0% | 83.5 / 94.2 | 100 | pseudogene (108/315 nt) | insO | IS911B regulator fragment |
| * | NC_000913 | 4,037,496 | 0 | A | T | 53.1% | ‑1.0 / 65.7 | 49 | intergenic (+161/‑23) | alaT/rrlA | tRNA‑Ala/23S ribosomal RNA |
| * | NC_000913 | 4,509,463 | 0 | T | G | 45.2% | 53.1 / 122.7 | 125 | pseudogene (455/471 nt) | insO | IS911B regulator fragment |
| * | NC_000913 | 4,509,416 | 0 | T | C | 44.8% | 44.2 / 141.9 | 125 | pseudogene (408/471 nt) | insO | IS911B regulator fragment |
| * | NC_000913 | 811,721 | 0 | T | G | 44.3% | 46.5 / 15.3 | 62 | V67G (GTG→GGG) | bioC | malonyl‑acyl carrier protein methyltransferase |
| * | NC_000913 | 4,509,428 | 0 | A | G | 43.5% | 29.1 / 145.7 | 126 | pseudogene (420/471 nt) | insO | IS911B regulator fragment |
| * | NC_000913 | 4,509,537 | 0 | G | A | 41.3% | 61.1 / 102.5 | 105 | pseudogene (59/315 nt) | insO | IS911B regulator fragment |
| * | NC_000913 | 4,509,544 | 0 | G | A | 41.0% | 71.8 / 98.0 | 101 | pseudogene (66/315 nt) | insO | IS911B regulator fragment |
| * | NC_000913 | 4,509,487 | 0 | A | G | 40.5% | 55.3 / 113.6 | 112 | pseudogene (9/315 nt) | insO | IS911B regulator fragment |
| * | NC_000913 | 4,509,524 | 0 | C | T | 40.2% | 75.8 / 110.2 | 113 | pseudogene (46/315 nt) | insO | IS911B regulator fragment |
| * | NC_000913 | 4,509,478 | 1 | . | C | 38.3% | 87.2 / 218.4 | 120 | pseudogene (470/471 nt) | insO | IS911B regulator fragment |
| * | NC_000913 | 4,509,562 | 0 | T | C | 38.1% | 71.2 / 80.5 | 101 | pseudogene (84/315 nt) | insO | IS911B regulator fragment |
| * | NC_000913 | 4,509,556 | 0 | T | C | 37.4% | 84.2 / 84.0 | 100 | pseudogene (78/315 nt) | insO | IS911B regulator fragment |
| * | NC_000913 | 300,126 | 0 | A | G | 36.4% | 49.2 / 10.9 | 46 | L270P (CTC→CCC) | paoC | aldehyde dehydrogenase: molybdenum cofactor‑binding subunit |
| * | NC_000913 | 4,509,592 | 0 | G | A | 36.0% | 74.8 / 84.9 | 100 | pseudogene (114/315 nt) | insO | IS911B regulator fragment |
| * | NC_000913 | 2,745,089 | 0 | A | C | 34.0% | 70.0 / 11.9 | 53 | V84G (GTG→GGG) | trmD | tRNA m(1)G37 methyltransferase |
| * | NC_000913 | 4,509,623 | 0 | G | A | 30.9% | 113.4 / 69.7 | 98 | pseudogene (145/315 nt) | insO | IS911B regulator fragment |
| * | NC_000913 | 4,509,640 | 0 | T | C | 29.9% | 113.9 / 55.5 | 88 | pseudogene (162/315 nt) | insO | IS911B regulator fragment |
| * | NC_000913 | 4,509,628 | 0 | A | G | 28.7% | 114.5 / 55.0 | 91 | pseudogene (150/315 nt) | insO | IS911B regulator fragment |
| * | NC_000913 | 4,509,632 | 0 | A | G | 28.4% | 122.4 / 52.1 | 91 | pseudogene (154/315 nt) | insO | IS911B regulator fragment |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1293268 = | 41 (0.870) | 5 (0.110) | 5/484 | 4.0 | 10.9% | intergenic (‑346/‑259) | hns/tdk | DNA‑binding transcriptional dual regulator H‑NS/thymidine/deoxyuridine kinase |
| ? | NC_000913 | = 2290113 | NA (NA) | noncoding (1/1195 nt) | IS5 | repeat region | |||||
| * | ? | NC_000913 | = 3083896 | 54 (1.140) | 3 (0.070) | 3/470 | 4.7 | 4.4% | intergenic (‑99/+39) | speB/speA | agmatinase/biosynthetic arginine decarboxylase |
| ? | NC_000913 | 3084247 = | 79 (1.720) | coding (1665/1977 nt) | speA | biosynthetic arginine decarboxylase | |||||
| * | ? | NC_000913 | = 2553189 | 71 (1.490) | 3 (0.060) | 3/478 | 4.7 | 4.3% | coding (838/870 nt) | amiA | N‑acetylmuramoyl‑L‑alanine amidase A |
| ? | NC_000913 | = 2553565 | 63 (1.350) | coding (341/900 nt) | hemF | coproporphyrinogen III oxidase | |||||
| * | ? | NC_000913 | = 1919025 | 58 (1.220) | 3 (0.060) | 3/472 | 4.7 | 6.1% | coding (1516/2634 nt) | letB | lipophilic envelope spanning tunnel |
| ? | NC_000913 | = 2619886 | 36 (0.780) | coding (275/1290 nt) | uraA | uracil:H(+) symporter UraA | |||||
| * | ? | NC_000913 | 1268866 = | 35 (0.740) | 3 (0.060) | 3/480 | 4.7 | 6.5% | coding (702/855 nt) | kdsA | 3‑deoxy‑D‑manno‑octulosonate 8‑phosphate synthase |
| ? | NC_000913 | = 4292560 | 52 (1.110) | coding (1049/1659 nt) | nrfE | putative cytochrome c‑type biogenesis protein NrfE | |||||