New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 191902558 (1.220)3 (0.060) 3/472 4.7 6.1% coding (1516/2634 nt) letB lipophilic envelope spanning tunnel
?NC_000913 = 2619886 36 (0.780)coding (275/1290 nt) uraA uracil:H(+) symporter UraA
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GTGACCGCCAGGGTGGTAATAGAGATGATGATGGTTTTGGAGTCTGGCGTTTGCCCTTCAGCCGGGAGTAAACCCGCCATACCGGCAGCTACGCCCGCCAGCTCCAGACCGATGACGGCAACGATTGCGCCCATTGCCGCAGGTGGAAACAGCACGTCCAGCCAGCCGGTCCCCGCTTTCTTCACGATAAAAGAAACCAGGCAGAACAGCACGCCGCACATAATAAAGCCGCCCAGCGCGACTTCATACCCTAACGGCAACAGTAACAATACCGGTGAAATAAAGGCAAAGCTGGAACCAAGATAAGCCGGAATTTTCCCTTTACAGATGAAGAGATACAGCAGCGTTCCAATACCGTTAAATAACAGTACAGTCGCCGGGTTAATATGAAATAAGACGGGCACCAGGACGGTTGCACCAAACATGGCGAACAAATGTTGCAAACTAAGCGGGATTGTCTGTAAAAGTGGCGGTC  >  NC_000913/2619655‑2620129
                                                                                                                                                                                                                                          |                                                                                                                                                                                                                                                   
gTGACCGCCAGGGTGGAAATAGAGATGATGATGGTTTTGGCGTCTGGCGTTTGCCCTTCAGCCGGGAGTAAACCCGCCATACCGGCAGCTACGCCAGCCAGCTCCCGACCGATGCCGGCAACGATTGCGCCCATTTCCGACGGAGGAAACAGCACATCACGCCAACCGGTCCCCGCTTTCTTCACGATAAAAGAACCCAGGCCGAACAGCACGCCGCCCATAATAAATCACACCCGCGCGACTTAATAccc                                                                                                                                                                                                                                  >  2:243874/1‑251 (MQ=255)
  gACCGCCAGGGTGGTAATAGAGATGATGATGGTTTTGGAGTCTGGCGTTTGCCCTTCAGCCGGGAGTAAACCCGCCATACCGGCAGCTACGCCCGCCAGCTCCAGACCGATGACGGCAACGATTGCGCCCATTGCCGCAGGTGGAAACCGCACGTCCAGCCAGCCGGTCCCCGCTTTCTTCACGATAAAAGAAACCAGGCAGAACAGAACGCCGCACATAATAAAGCCGCCAAGCGCGACTTCATCCCCt                                                                                                                                                                                                                                 >  2:187858/1‑250 (MQ=255)
              ggtAATAGAGATGATGATGGTTTTGGAGTCTGGCGTTTGCCCTTCAGCCGGGAGTAAACCCGCCATACCGGCAGCTACGCCCGCCAGCTCCAGACCGATGACGGCAACGATTGCGCCCATTGCCGCAGGTGGAAACAGCACGTCCAGCCAGCCGGTCCCCGCTTTCTTCACGATAAAAGAAACCAGGCAGAACAGCACGCCGCACATAATAAAGCCGCCCAGCGCGACTTCATACCCTAACGGCAACAGt                                                                                                                                                                                                                     >  2:89440/1‑250 (MQ=255)
                       gatgatgatGGTTTTGGAGTCTGGCGTTTGCCCTTCAGCCGGGAGTAAACCCGCCATACCGGCAGCTACGCCCGCCAGCTCCAGACCGATGACGGCAACGATTGCGCCCATTGCCGCAGGTGGAAACAGCACGTCCAGCCAGCCGGTCCCCGCTTTCTTCACGATAAAAGAAACCAGGCAGAACAGCACGCCGCACATAATAAAGCCGCCCAGCGCGACTTCATACCCTAACGGCAACAGTAACAATACCg                                                                                                                                                                                                           >  1:196426/1‑251 (MQ=255)
                         gttttggtgttttggggtgggccGTTTCCCCCTCAGGCGGGAGAAAACCCCGCCATCCCGGCAGCTCCGCCCGCCAGCTCCAGACCGATGACGGCAACGATTGCGCCCATTGCCGCAGGTGGAAACAGCACGTCCAGCCAGCCGGTCCCCGCTTTCTTCACGATAAAAGAAACCAGGCAGAACAGCACGCCGCACATAATAAAGCCGCCCAGCGCGACTTCATACCCTAACGGCAACAGTAACAATACCgg                                                                                                                                                                                                          <  1:89440/229‑1 (MQ=255)
                          gatgatgGTTTTGGAGTCTGGCGTTTGCCCTTCAGCCGGGAGTAAACCCGCCATACCGGCAGCTACGCCCGCCAGCTCCAGACCGATGACGGCAACGATTGCGCCCATTGCCGCAGGTGGAAACAGCACGTCCAGCCAGCCGGTCCCCGCTTTCTTCACGATAAAAGAAACCAGGCAGAACAGCACGCCGCACATAATAAAGCCGCCCAGCGCGACTTCATACCCTAACGGCAACAGTAACAATACCgg                                                                                                                                                                                                          >  1:85205/1‑249 (MQ=255)
                                      ggAGTCTGGCGTTTGCCCTTCAGCCGGGAGTAAACCCGCCATACCGGCAGCTACGCCCGCCAGCTCCAGACCGATGACGGCAACGATTGCGCCCATTGCCGCAGGTGGAAACAGCACGTCCAGCCAGCCGGTCCCCGCTTTCTTCACGATAAAAGAAACCAGGCAGAACAGCACGCCGCACATAATAAAGCCGCCCAGCGCGACTTCATACCCTAACGGCAACAGTAACAATACCGGTGAAATAAAGGCa                                                                                                                                                                                             >  1:286392/1‑250 (MQ=255)
                                                  ttGCCCTTCAGCCGGGAGTAAACCCGCCATACCGGCAGATACGCCCTCCCGCTCCTGACCGTTGACGGCCACGATTGCGCCCCTTGCCGCCGGTGGCAACAGCACGTCCCCCCAGACGGTCCCCGCTTTCTTCACGATAAAAGAAACCAGGCAGAACAGCACGCCACACATAATAAAGCCGCCCAGCGCGAAGTCATACCCCAACGGCAACAGAAACAATACCCGAGAAATaacgcacaagatggaacc                                                                                                                                                                                  >  2:11306/1‑233 (MQ=255)
                                                               gggAGTAAACCCGCCATACCGGCAGCTACGCCCGCCAGCTCCAGACCGATGACGGCAACGATTGCGCCCATTGCCGCAGGTGGAAACAGCACGTCCAGCCAGCCGGTCCCCGCTTTCTTCACGATAAAAGAAACCAGGCAGAACAGCACGCCGCACATAATAAAGCCGCCCAGCGCGACTTCATACCCTAACGGCAACAGTAACAATACCGGTGAAATAAAGGCAAAGCTGGAACCAAGATAAGCCGGAAt                                                                                                                                                                   >  1:221368/1‑251 (MQ=255)
                                                                      aaCCCGCCATACCGGCAGCTACGCCCGCCAGCTCCCGACCGATGACGGCAACGATTGCGCCCATTGCCGCAGGTGGAAACAGCACGTCCAGCCAGCCGGTCCCCGCTTTCTTCACGATAAAAGAAACCAGGCAGAACAGCACGCCGCACATAATAAAGCCGCACAGCGCGACTTCATACCCTAACGGCAACAGTAACAATACCGGTGAAATAAAGGCAAAGCTGGAACCCAGATAAGCCGGGCTTTTCCCt                                                                                                                                                            >  2:452822/1‑251 (MQ=255)
                                                                          cgacaacacccgcacccacgtccgccAGTACCAGACCGATGACGGCAACGATTGCGCCCATTGCCGCAGGTGGAAACAGCACGACCAGCCAGCCGGTCCCCGCTTTCTTCACGATAAAAGAAACCAGGCAGAACAGCACGACGCACATAATAAAGCCGCCCAGCGCGACTTCATACCCTAACGGCAACAGTAACAATACCGGTGAAATAAAGGCAAAGCTGTAACCAAGATAAGCCGGAATGTTCCCTTTa                                                                                                                                                         <  2:109305/230‑1 (MQ=255)
                                                                             ccATACCGGCAGCTACGCCCGCCAGCTCCAGACCGCTGACGGCAACGATTGCGCCCATTGCCGCAGGTGGAAACAGCACGTCCAGCCAGCCGGTCCCCGCTTTCTTCACGATAACAGAAACCAGGCAGAACAGCACGCCGCACATACTAAAACCACCCAGCGCGACTTCATACCCTAACGGCAACAGAAAAAAAACCGGAGAACTAAAGGCACAACTGGAACCAAGATAAGCCGGAATTTTCCATTTACa                                                                                                                                                       >  2:399698/1‑250 (MQ=255)
                                                                                     gcggctccgcccgccAGCACCAGACCGATTACGGCAACGATTGCGCCCATTGCGGCAGGTGGAAACAGCACCTCAAGCCAGCCGGGCCCCGCTTTCTTCACGAAAAAAGAAACCAGGCAGAACAGCACGCCGCACATAATAAAGCCGCCCTGCGCGACTTCATACCCTAACGGCAACAGTAACAATACCGGTGAAATAAAGGCAAAGCTGGAACCAAGATAAGCCGGAATTTGCCCTTTACTGATGAagag                                                                                                                                              <  2:325894/244‑1 (MQ=255)
                                                                                       ccaccaccccgacagatacAGACCTATGTCTGCAACGATTGCGCCCATTGCCGCAGGGGGAAACTGCACGTCCAGCCAGCCGGTCCCCGCTTTCCTCACGATAAAAGAAACCAGGCAGAACAGCACGCCGCACATAATAAAGCCGCCCAGCGCGACTTCATACCCTAACGGCAACAGTAACAATACCGGTGAAATAAAGGCAAAGCTGGAACCAAGATAAGCCGGAATTTTCCCTTTACAGATGAAGAGAt                                                                                                                                            <  2:274270/233‑1 (MQ=255)
                                                                                              cccgccAGCTCCAGACCGATGACGGCACCGATTGCGCCCATTGCCGCAGGTGGAAACAGCACGTCCAGCCAGCCGGTCCCCGCTTTCTTCACGATAAAAGAAACCAGGCAGAACAGCACGCCGCACATAATAAAGCCGCCCAGCGCGACTTCATACCCTAACGGCAACAGTAACAATACCGGTGAAATAAAGGCAAAGCTGGAACCAAGATAAGCCGGAATTTTCCCTTTACAGATGAAGAGATAcagcag                                                                                                                                     <  2:292040/251‑1 (MQ=255)
                                                                                                         cAGACCGATGACGGCAACGATTGCGCCCATTGCCGCAGGTGGAAACAGCACGTCCAGCCAGCCGGTCCCCGCTTTCTTCACGATAAAAGAAACCAGGCAGAACAGCACGCCGCACATAATAAAGCCGCCCAGCGCGACTTCATACCCTAACGGCAACAGTAACAATACCGGTGAAATAAAGGCAAAGCTGGAACCAAGATAAGCCGGAATTTTCCCTTTACAGATGAAGAGATACAGCAGCGTTCCAATAc                                                                                                                          <  1:194429/251‑1 (MQ=255)
                                                                                                              cGATGACGGCAACGTTTGCGCCCATTGCCGCAGGTGGAAACAGCACGCTCAGCCAGCCGGTCCCCGCTTTCTTCACGATAAAAGAAACCAGGCAGAACAGCACGCCGCACATAATAAAGCCGCCCAGCGCGACTTCATACCCTAACGGCAACAGTAACAATACCGGTGAAATAAAGGCAAAGCTGGAACCAAGATAAGCCGGAATTTTCCCTTTACAGATGAAGAGATACAGCAGCGTTCCAATACCGTTa                                                                                                                     <  2:395212/251‑1 (MQ=255)
                                                                                                              cGATGACGGCAAAGAGTGCGCCCATTGCCGCAGGTGGAAACAGCACGTCCAGCCCGCCGGTCCCCGCTTTATTCACGATAAAAGAAACCAGGCAGAACAGAACGCCGCACATAATAAAGCCGCCCAGCGCGAATGCATACCCTAACGACAACAGTAACAATAACGGTGAAATAAAGGAAAAGCTGGCACCAAGATAAGACGGCGTTTTCCATTTACAGATGAGGAACTACAGCAGAGTCCCAATAccatt                                                                                                                      >  2:230203/1‑247 (MQ=255)
                                                                                                                  gcagggaacgagtgcccacagtGCCGCAGGTGGAAACGACACGTCCAGCCCGCCGGTCCCCGCTTTCTTCACGATAAAAGAAACCAGGCAGAACAGCACGCCGCACAGAAAAAAGCCGCCCAACGCGACTTCATACCCTAACGGCAACAGTAACAATACCGGTGAAATAAAGGCAAAGCTGGAACCAAGATAAGCCGGAATGTTCCATTGACATAGGAAGAGATACTGCAGCGTTCCAATCCCGTTAAATa                                                                                                                 <  2:31940/230‑1 (MQ=255)
                                                                                                                                   ccATTGCCGCAGGTGGAAACAGCACGCCCAGCCAGCCGGTCCCCGCTTTCTTCACGATAAAAGAAACCAGGCAGAACAGCACGCCGCACATAATAAAGCCGCCCAGCGCGACTTCATACCCTAACGGCAACAGTAACAATACCGGTGAAATAAAGGCAAAGCTGGAACCAAGATAAGCCGGAATTTTCCCTTTACAGATGAAGAGATACAGCAGCGTTCCAATACCGTTAAATAACAGTACAGTCGCCggg                                                                                                <  2:286392/251‑1 (MQ=255)
                                                                                                                                   ccATGGCCGCAGGGGGAAACAGCACGTCCAGCCAGTCGGTCCCCGCTTTCTTCACGATAAAAGAAACCAGGCAGAACAGCACGCCGCACATAATAAAGCCGCCCAGCGCGACTTCATACCCTAACGGCAGCAGTAACAATACCGGTGAAATAAAGGCAAAGCTGGAACCAAGAAAAGCCGGAATTTTCCCTTTACAGATGAAGAGATACAGCAGCGTTCCAATACCGTTAAATAACAGTACAGCCGCCggg                                                                                                <  2:432564/251‑1 (MQ=255)
                                                                                                                                       gtcagCAGGTGGAAACACCACTCTCCGCCAGCCGGGCCCCTCTTTCTACACGACAAAAGAAACCAGGCAGTACAGCACGCCGCACATAATAAAGCCGCCCAGCGCGACTGCATATCCGAACTGCAACAGCAACAATACCGGTGAAATAAAGGCAAAGCTGGACCCAAGATAAGCCGGAATTTTTACTTTACAGAGGATGAGATACAGCAGCGTTTCAATTCCGTTAAAGAACAGTACAGTCGCCGGGTTaa                                                                                            <  2:298074/247‑1 (MQ=255)
                                                                                                                                                  gAAACAGCACGTCCAGCCAGCCGGTCCCCGCTTTCTTCACGATAAAAGAAACCAGGCAGAACAGCACGCCGCACATAATAAAGCCGCCCAGCGCGACTTCATACCCTAACGGCAACAGTAACAATACCGGTGAAATAAAGGCAAAGCTGGAACCAAGATAAGCCGGAATTTTCCCTTTACAGATGAAGAGATACAGCAGCGTTCCAATACCGTTAAATAACAGTACAGTCGCCGGGTTAATATGAAATa                                                                                   >  1:263752/1‑249 (MQ=255)
                                                                                                                                                        gCACGTCCAGCCATCCGGTCCCCGCTTTCTTCACGATAAAAGAAACCAGGCAGAACAGCACGCCGCACATAATAAAGCCGCCCAGCGCGACTTCATACCCTAACGGCAACAGTAACAATACCGGTGAAATAAAGGCAAAGCTGGAACCAAGATAAGCCGGAATTTTCCCTTTACAGATGAAGAGATACAGCAGCGTTCCAATACCGTTAAATAACAGTACAGTCGCCGGGTTAATATGAAATAAGACGGGc                                                                           <  2:196426/251‑1 (MQ=255)
                                                                                                                                                         cACGGCCAGCCAGCCGGTCCCCGCTTTCTTCACGATAAAAGAAACCAGGCAGAACAGCACGCCGCACATAATAAAGCCGCCCAGAGCGACTTCATACCCTAACGGCAACAGTAACAATACCGGTGAAATAAAGGCAAAGCTGGAACCAAGATAAGCCGGAATTTTCCCTTTACAGATGAAGAGATACAGCAGCGTTCCAATACCGTGAAATAACAGTACAGTCGCCGGGTTAATATGAAATAAGACGGGCa                                                                          <  2:103052/251‑1 (MQ=255)
                                                                                                                                                                     agccGGTCCCCGCTTTCTTCACGATAAAAGAAACCAGGCAGAACAGCACGCCGCAAATAATAAAGCCGCCCAGCGCGACTTCATACCCTAACGGCAACAGTAACAATACCGGTGAAATAAAGGCAAAGCTGGAACCAAGATAAGCCGGAATTTTCCCTTTACAGATGAAGAGATACAGCAGCGTTCCAATACCGTTAAATAACAGTACAGTCGCCGGGTTAATATGAAATAAGACGGGCACCAGGACGGtt                                                               >  1:24164/1‑251 (MQ=255)
                                                                                                                                                                              ccGCTTTCTTCACGATAAAAGAAACCAGGCAGAACAGCACGCCGCACATAATAAAGCCGCCCAGCGCGACTTCATACCCTAACGGCAACAGTAACAATACCGGTGAAATAAAGGCAAAGCTGGAACCAAGATAAGCCGGAATTTTCCCTTTACAGATGAAGAGATACAGCAGCGTTCCAATACCGTTAAATAACAGTACAGTCGCCGGGTTAATATGAAATAAGACGGGCACCAGGACGGTTGCACCAAAc                                                      <  1:269696/251‑1 (MQ=255)
                                                                                                                                                                                           gATAAAAGAAACCAGGCAGAACAGCACGCCGCACATAATAAAGCCGCCCAGCGCGACTTCATACCCTAACGGCAACAGTAACAATACCGGTGAAATAAAGGCAAAGCTGGAACCAAGATAAGCCGGAATTTTCCCTTTACAGATGAAGAGATACAGCAGCGTTCCAATACCGTTAAATAACAGTACAGTCGCCGGGTTAATATGAAATAAGACGGGCACCAGGACGGTTGCACCAAACATGGCGAACAAAt                                         >  1:301384/1‑251 (MQ=255)
                                                                                                                                                                                                                  gCACGCCGCACATAATAAAGCCGCCCAGCGCGACTTCATACCCTAACGGCAACAGTAACAATACCGGTGAAATAAAGGCAAAGCTGGAACCAAGATAAGCCGGAATTTTCCCTTTACAGATGAAGAGATACAGCAGCGTTCCAATACCGTTAAATAACAGTACAGTCGCCGGGTTAATATGAAATAAGACGGGCACCAGGACGGTTGCACCAAACATGGCGAACAAATGTTGCAAACTAAGCGGGATTGTc                  >  1:175311/1‑251 (MQ=255)
                                                                                                                                                                                                                   cACGCCGCACATAATAAAGCCGCCCAGCGCGACTTCATACCCTAACGGCAACAGTAACAATACCGGTGAAATAAAGGCAAAGCTGGAACCAAGATAAGCCGGAATTTTCCCTTTACAGATGAAGAGATACAGCAGCGTTCCAATACCGTTAAATAACAGTACAGTCGCCGGGTTAATATGAAATAAGACGGGCACCAGGACGGTTGCACCAAACATGGCGAACAAATGTTGCAAACTAAGCGGGATTGTCt                 <  1:114470/251‑1 (MQ=255)
                                                                                                                                                                                                                     cgccgcACATAATAAAGCCGCCCAGCGCGACTTCATACCCTAACGGCAACAGTAACAATACCGGTGAAATAAAGGCAAAGCTGGAACCAAGATAAGCCGGAATTTTCCCTTTACAGATGAAGAGATACAGCAGCGTTCCAATACCGTTAAATAACAGTACAGTCGCCGGGTTAATATGAAATAAGACGGGCACCAGGACGGTTGCACCAAACATGGCGAACAAATGTTGCAAACTAAGCGGGATTGTCTGt               <  2:273157/251‑1 (MQ=255)
                                                                                                                                                                                                                      gccgcACATAATAAAGCCGCCCAGCGCGACTTCATACCCTAACGGCAACAGTAACAATACCGGTGAAATAAAGGCAAAGCTGGAACCAAGATAAGCCGGAATTTTCCCtt                                                                                                                                                           >  1:107198/1‑110 (MQ=255)
                                                                                                                                                                                                                      gccgcACATAATAAAGCCGCCCAGCGCGACTTCATACCCTAACGGCAACAGTAACAATACCGGTGAAATAAAGGCAAAGCTGGAACCAAGATAAGCCGGAATTGTCCCtt                                                                                                                                                           <  2:107198/110‑1 (MQ=255)
                                                                                                                                                                                                                       ccgcACATAATAAAGCCGCCCAGCGCGACTTCATACCCTAACGGCAACAGTAACAATACCGGTGAAATAAAGGCAAAGCTGGAACCAAGATAAGCCGGAATTTTCCCTTTACAGATGAAGAGATACAGCAGCGTTCCAATACCGTTAAATAACAGTACAGTCGCCGGGTTAATATGAAATAAGACGGGCACCAGGACGGTTGCACCAAACATGGCGAACAAATGTTGCAAACTAAGCGGGATTGTCTGTaa             <  1:498335/251‑1 (MQ=255)
                                                                                                                                                                                                                                ataaAGCCGCCCAGCGCGACTTCATACCCTAACGGCAACAGTAACAATACCGGTGAAATAAAGGCAAAGATGGAACCAAGATAAGCCGGAATTTTCCCTTTACAGATGAAGAGATACAGCAGCGTTCCAATACCGTTAAATAACAGTACAGTCGCCGGGTTAATATGAAATAAGACGGGCACCAGGACGGTTGCACCAAACATGGCGAACAAATGTTGCAAACTAAGCGGGATTGTCTGTAAAAGTGGCgg    >  2:330035/1‑251 (MQ=255)
                                                                                                                                                                                                                                  aaaGCCGCCCAGCGCGACTTCATACCCTAACGGCAACAGTAACAATACCGGTGAAATAAAGGCAAAGCTGGAACCAAGATAAGCCGGAATTTTCCCTTTACAGATGAAGAGATACAGCAGCGTTCCAATACCGTTAAATAACAGTACAGTCGCCGGGTTAATATGAAATAAGACGGGCACCAGGACGGTTGCACCAAACATGGCGAACAAATGTTGCAAACTAAGCGGGATTGTCTGTAAAAGGGGCgggt  >  2:73731/1‑249 (MQ=255)
                                                                                                                                                                                                                                          |                                                                                                                                                                                                                                                   
GTGACCGCCAGGGTGGTAATAGAGATGATGATGGTTTTGGAGTCTGGCGTTTGCCCTTCAGCCGGGAGTAAACCCGCCATACCGGCAGCTACGCCCGCCAGCTCCAGACCGATGACGGCAACGATTGCGCCCATTGCCGCAGGTGGAAACAGCACGTCCAGCCAGCCGGTCCCCGCTTTCTTCACGATAAAAGAAACCAGGCAGAACAGCACGCCGCACATAATAAAGCCGCCCAGCGCGACTTCATACCCTAACGGCAACAGTAACAATACCGGTGAAATAAAGGCAAAGCTGGAACCAAGATAAGCCGGAATTTTCCCTTTACAGATGAAGAGATACAGCAGCGTTCCAATACCGTTAAATAACAGTACAGTCGCCGGGTTAATATGAAATAAGACGGGCACCAGGACGGTTGCACCAAACATGGCGAACAAATGTTGCAAACTAAGCGGGATTGTCTGTAAAAGTGGCGGTC  >  NC_000913/2619655‑2620129

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.