mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.39.0
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 60 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 579,146 | 0 | A | G | 70.6% | 40.3 / 20.3 | 34 | intergenic (‑253/+38) | borD/ybcV | prophage lipoprotein BorD/DUF1398 domain‑containing protein YbcV |
| * | NC_000913 | 579,134 | 0 | T | C | 69.7% | 43.2 / 22.6 | 33 | intergenic (‑241/+50) | borD/ybcV | prophage lipoprotein BorD/DUF1398 domain‑containing protein YbcV |
| * | NC_000913 | 579,127 | 0 | T | C | 68.8% | 38.1 / 22.5 | 33 | intergenic (‑234/+57) | borD/ybcV | prophage lipoprotein BorD/DUF1398 domain‑containing protein YbcV |
| * | NC_000913 | 579,671 | 0 | T | C | 67.3% | 59.2 / 35.1 | 52 | intergenic (‑77/‑209) | ybcV/ybcW | DUF1398 domain‑containing protein YbcV/uncharacterized protein YbcW |
| * | NC_000913 | 579,099 | 0 | A | . | 66.7% | 29.0 / 50.2 | 33 | intergenic (‑206/+85) | borD/ybcV | prophage lipoprotein BorD/DUF1398 domain‑containing protein YbcV |
| * | NC_000913 | 579,540 | 0 | T | C | 66.7% | 57.4 / 30.7 | 45 | N19D (AAC→GAC) | ybcV | DUF1398 domain‑containing protein YbcV |
| * | NC_000913 | 579,502 | 0 | A | G | 65.9% | 57.7 / 27.3 | 44 | N31N (AAT→AAC) | ybcV | DUF1398 domain‑containing protein YbcV |
| * | NC_000913 | 579,811 | 0 | C | T | 64.3% | 33.5 / 35.3 | 43 | intergenic (‑217/‑69) | ybcV/ybcW | DUF1398 domain‑containing protein YbcV/uncharacterized protein YbcW |
| * | NC_000913 | 579,717 | 0 | A | C | 63.3% | 39.3 / 39.9 | 49 | intergenic (‑123/‑163) | ybcV/ybcW | DUF1398 domain‑containing protein YbcV/uncharacterized protein YbcW |
| * | NC_000913 | 579,651 | 0 | C | T | 62.7% | 32.7 / 47.0 | 52 | intergenic (‑57/‑229) | ybcV/ybcW | DUF1398 domain‑containing protein YbcV/uncharacterized protein YbcW |
| * | NC_000913 | 579,004 | 0 | C | T | 61.9% | 5.6 / 20.7 | 22 | intergenic (‑111/+180) | borD/ybcV | prophage lipoprotein BorD/DUF1398 domain‑containing protein YbcV |
| * | NC_000913 | 579,271 | 0 | G | A | 61.8% | 13.8 / 34.9 | 35 | H108H (CAC→CAT) | ybcV | DUF1398 domain‑containing protein YbcV |
| * | NC_000913 | 579,285 | 0 | T | C | 60.5% | 29.0 / 31.2 | 38 | I104V (ATT→GTT) | ybcV | DUF1398 domain‑containing protein YbcV |
| * | NC_000913 | 579,385 | 0 | A | G | 60.0% | 25.9 / 40.8 | 40 | N70N (AAT→AAC) | ybcV | DUF1398 domain‑containing protein YbcV |
| * | NC_000913 | 579,457 | 0 | A | G | 55.3% | 8.3 / 45.8 | 38 | I46I (ATT→ATC) | ybcV | DUF1398 domain‑containing protein YbcV |
| * | NC_000913 | 2,304,549 | 0 | C | T | 53.8% | ‑5.3 / 11.1 | 13 | intergenic (+156/+559) | eco/mqo | serine protease inhibitor ecotin/malate:quinone oxidoreductase |
| * | NC_000913 | 578,427 | 0 | G | C | 50.0% | ‑4.3 / 106.0 | 58 | T107T (ACG→ACC) R34P (CGG→CCG) | rzpD rzoD | putative prophage endopeptidase RzpD putative prophage lysis lipoprotein RzoD |
| * | NC_000913 | 4,040,623 | 0 | G | A | 50.0% | ‑6.0 / 58.7 | 40 | noncoding (107/120 nt) | rrfA | 5S ribosomal RNA |
| * | NC_000913 | 578,811 | 0 | T | G | 47.8% | 8.6 / 52.6 | 46 | Q28P (CAG→CCG) | borD | prophage lipoprotein BorD |
| * | NC_000913 | 578,831 | 0 | T | C | 47.6% | ‑5.6 / 59.3 | 43 | T21T (ACA→ACG) | borD | prophage lipoprotein BorD |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1047272 | 34 (0.900) | 3 (0.080) | 3/488 | 3.0 | 6.5% | coding (674/2097 nt) | gfcD | putative lipoprotein GfcD |
| ? | NC_000913 | = 4158743 | 52 (1.370) | coding (254/918 nt) | oxyR | DNA‑binding transcriptional dual regulator OxyR | |||||