mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.39.0
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 196 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 578,811 | 0 | T | G | 57.1% | 15.9 / 47.3 | 42 | Q28P (CAG→CCG) | borD | prophage lipoprotein BorD |
| * | NC_000913 | 1,429,207 | 0 | T | G | 56.7% | 45.7 / 73.0 | 67 | V53V (GTT→GTG) | stfR | putative prophage side tail fiber protein StfR |
| * | NC_000913 | 579,127 | 0 | T | C | 56.0% | 7.5 / 25.4 | 25 | intergenic (‑234/+57) | borD/ybcV | prophage lipoprotein BorD/DUF1398 domain‑containing protein YbcV |
| * | NC_000913 | 578,809 | 0 | T | C | 55.8% | 9.7 / 55.0 | 43 | T29A (ACA→GCA) | borD | prophage lipoprotein BorD |
| * | NC_000913 | 1,429,204 | 0 | C | T | 54.5% | 29.5 / 79.9 | 67 | D52D (GAC→GAT) | stfR | putative prophage side tail fiber protein StfR |
| * | NC_000913 | 1,429,228 | 0 | T | C | 54.3% | 26.6 / 91.2 | 70 | V60V (GTT→GTC) | stfR | putative prophage side tail fiber protein StfR |
| * | NC_000913 | 1,429,171 | 0 | A | G | 53.8% | 16.5 / 85.0 | 66 | E41E (GAA→GAG) | stfR | putative prophage side tail fiber protein StfR |
| * | NC_000913 | 1,429,225 | 0 | C | T | 53.6% | 9.2 / 92.2 | 70 | S59S (AGC→AGT) | stfR | putative prophage side tail fiber protein StfR |
| * | NC_000913 | 1,429,273 | 0 | T | C | 53.6% | 9.7 / 105.0 | 69 | I75I (ATT→ATC) | stfR | putative prophage side tail fiber protein StfR |
| * | NC_000913 | 579,099 | 0 | A | . | 53.6% | 46.2 / 65.5 | 28 | intergenic (‑206/+85) | borD/ybcV | prophage lipoprotein BorD/DUF1398 domain‑containing protein YbcV |
| * | NC_000913 | 1,429,111 | 0 | A | C | 53.6% | 12.5 / 73.8 | 56 | T21T (ACA→ACC) | stfR | putative prophage side tail fiber protein StfR |
| * | NC_000913 | 578,831 | 0 | T | C | 53.5% | 6.0 / 58.8 | 43 | T21T (ACA→ACG) | borD | prophage lipoprotein BorD |
| * | NC_000913 | 1,429,128 | 0 | A | G | 53.1% | 18.7 / 84.0 | 64 | K27R (AAA→AGA) | stfR | putative prophage side tail fiber protein StfR |
| * | NC_000913 | 1,429,160 | 0 | C | G | 53.1% | 19.4 / 105.3 | 64 | L38V (CTG→GTG) | stfR | putative prophage side tail fiber protein StfR |
| * | NC_000913 | 1,429,291 | 0 | T | A | 52.9% | 9.3 / 99.0 | 69 | S81S (TCT→TCA) | stfR | putative prophage side tail fiber protein StfR |
| * | NC_000913 | 1,429,231 | 0 | T | C | 52.9% | 11.7 / 97.7 | 71 | I61I (ATT→ATC) | stfR | putative prophage side tail fiber protein StfR |
| * | NC_000913 | 1,429,236 | 0 | T | A | 52.9% | 24.7 / 96.0 | 71 | L63* (TTG→TAG) | stfR | putative prophage side tail fiber protein StfR |
| * | NC_000913 | 1,429,255 | 0 | G | A | 52.9% | 6.6 / 102.1 | 71 | P69P (CCG→CCA) | stfR | putative prophage side tail fiber protein StfR |
| * | NC_000913 | 1,429,258 | 0 | A | G | 52.9% | 11.0 / 102.5 | 70 | S70S (TCA→TCG) | stfR | putative prophage side tail fiber protein StfR |
| * | NC_000913 | 1,429,261 | 0 | T | C | 52.9% | 4.5 / 97.9 | 70 | H71H (CAT→CAC) | stfR | putative prophage side tail fiber protein StfR |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 696741 | 18 (0.510) | 3 (0.130) | 3/332 | 2.0 | 17.5% | intergenic (‑1/+15) | metU/glnW | tRNA‑Met/tRNA‑Gln |
| ? | NC_000913 | 697135 = | 16 (0.670) | intergenic (‑2/+378) | metT/asnB | tRNA‑Met/asparagine synthetase B | |||||